Wall clock time and date at job start Tue Mar 31 2020 11:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34515 * 125.79733 * 2 1 4 4 C 1.41378 * 106.84675 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.83733 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.78947 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47197 * 89.99815 * 6 5 4 8 8 C 1.52997 * 109.46943 * 180.02562 * 7 6 5 9 9 N 1.46908 * 109.46673 * 179.27593 * 8 7 6 10 10 C 1.46900 * 110.99702 * 287.81175 * 9 8 7 11 11 C 1.50700 * 109.47231 * 299.48070 * 10 9 8 12 12 H 1.07998 * 120.00011 * 4.21145 * 11 10 9 13 13 C 1.37878 * 120.00195 * 184.21053 * 11 10 9 14 14 N 1.31513 * 120.00028 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00022 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47258 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47134 * 120.00258 * 15 13 11 18 18 H 1.48501 * 109.46664 * 239.99519 * 15 13 11 19 19 C 1.46905 * 110.99806 * 163.86224 * 9 8 7 20 20 C 1.50693 * 109.47135 * 189.99473 * 19 9 8 21 21 C 1.38669 * 120.42325 * 270.25074 * 20 19 9 22 22 C 1.38622 * 118.42455 * 180.24108 * 21 20 19 23 23 C 1.38234 * 119.16015 * 359.75071 * 22 21 20 24 24 N 1.31850 * 120.75995 * 0.02562 * 23 22 21 25 25 C 1.31883 * 121.73202 * 0.02562 * 24 23 22 26 26 O 1.34302 * 108.42581 * 0.26443 * 5 4 3 27 27 H 1.09000 * 109.46838 * 89.99960 * 1 2 3 28 28 H 1.08999 * 109.46874 * 210.00271 * 1 2 3 29 29 H 1.08998 * 109.46587 * 330.00154 * 1 2 3 30 30 H 1.08004 * 126.57136 * 0.05575 * 3 2 1 31 31 H 1.07992 * 126.57991 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.46845 * 329.99996 * 6 5 4 33 33 H 1.08994 * 109.46937 * 209.99992 * 6 5 4 34 34 H 1.08990 * 109.46983 * 59.99936 * 7 6 5 35 35 H 1.09008 * 109.46814 * 300.00081 * 7 6 5 36 36 H 1.08993 * 109.47723 * 59.27504 * 8 7 6 37 37 H 1.09000 * 109.46760 * 299.26971 * 8 7 6 38 38 H 1.08999 * 109.47066 * 59.47989 * 10 9 8 39 39 H 1.09002 * 109.46770 * 179.48452 * 10 9 8 40 40 H 0.96999 * 120.00751 * 180.02562 * 14 13 11 41 41 H 1.08998 * 109.46968 * 69.99713 * 19 9 8 42 42 H 1.09004 * 109.46487 * 309.99682 * 19 9 8 43 43 H 1.08003 * 120.78436 * 359.97431 * 21 20 19 44 44 H 1.08005 * 120.42487 * 179.73043 * 22 21 20 45 45 H 1.08000 * 119.61831 * 180.02562 * 23 22 21 46 46 H 1.07998 * 119.61848 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0910 0.0000 4 6 3.6310 0.6319 -0.0006 5 6 3.5814 -0.7123 -0.0004 6 6 4.7705 -1.6381 -0.0003 7 6 5.1731 -1.9512 1.4423 8 6 6.3807 -2.8906 1.4423 9 7 6.7779 -3.1773 2.8273 10 6 7.4108 -2.0052 3.4467 11 6 8.6458 -1.6311 2.6685 12 1 8.8948 -2.1632 1.7622 13 6 9.4580 -0.6095 3.1133 14 7 9.1545 0.0388 4.2166 15 14 10.9885 -0.1454 2.1482 16 1 11.1045 -1.0197 0.9536 17 1 10.8909 1.2723 1.7171 18 1 12.1872 -0.3201 3.0073 19 6 7.6632 -4.3479 2.8894 20 6 7.8513 -4.7598 4.3267 21 6 8.8851 -4.2255 5.0808 22 6 9.0228 -4.6373 6.3972 23 6 8.1282 -5.5565 6.9125 24 7 7.1540 -6.0402 6.1672 25 6 6.9933 -5.6719 4.9111 26 8 2.2924 -1.0895 -0.0055 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3632 0.8900 0.5138 30 1 1.9667 2.1203 0.0008 31 1 4.5213 1.2431 -0.0004 32 1 5.6039 -1.1591 -0.5143 33 1 4.5104 -2.5636 -0.5139 34 1 4.3398 -2.4301 1.9562 35 1 5.4332 -1.0255 1.9559 36 1 7.2099 -2.4165 0.9172 37 1 6.1170 -3.8212 0.9399 38 1 6.7111 -1.1694 3.4417 39 1 7.6867 -2.2420 4.4743 40 1 9.7256 0.7577 4.5295 41 1 8.6302 -4.0956 2.4543 42 1 7.2170 -5.1708 2.3310 43 1 9.5694 -3.5087 4.6512 44 1 9.8192 -4.2452 7.0125 45 1 8.2283 -5.8821 7.9374 46 1 6.1837 -6.0903 4.3316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207945184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:41 Heat of formation + Delta-G solvation = 22.877982 kcal Electronic energy + Delta-G solvation = -25497.591083 eV Core-core repulsion = 21966.693568 eV Total energy + Delta-G solvation = -3530.897516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.50670 -41.05005 -38.79340 -35.61219 -34.58620 -34.07712 -33.38416 -32.58620 -31.78184 -29.21852 -28.45517 -26.39351 -25.40629 -24.31072 -23.92671 -22.71200 -22.22377 -21.27929 -21.00315 -18.51206 -17.80209 -17.53010 -17.21286 -17.13470 -16.81131 -16.32318 -16.07287 -15.85612 -15.31860 -14.97339 -14.70373 -14.48746 -14.16891 -14.02002 -13.90731 -13.81599 -13.74442 -13.66729 -13.24139 -13.04866 -12.89587 -12.84350 -12.80228 -12.46234 -12.40126 -12.21878 -11.93033 -11.82538 -11.61222 -11.39106 -10.80982 -10.62269 -10.49741 -10.32731 -9.82389 -9.15958 -8.94239 -8.10509 -6.28481 0.29616 0.46216 0.77472 1.34761 1.38805 1.47502 1.67155 2.01256 2.38114 2.92676 3.14903 3.49619 3.67104 3.77673 4.00653 4.01156 4.12862 4.13029 4.14643 4.22859 4.27542 4.39025 4.49300 4.54216 4.59830 4.65893 4.73233 4.79000 4.84676 4.86891 4.89696 4.95062 4.98339 5.05495 5.10102 5.27962 5.31256 5.34411 5.37898 5.42300 5.46807 5.58185 5.65942 5.81615 5.90064 6.09943 6.25600 6.29879 6.57810 6.92702 7.10589 7.41950 8.91256 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.003703 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.790608 B = 7559.605124 C = 9546.905773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.031 4.031 3 C -0.226 4.226 4 C -0.230 4.230 5 C -0.018 4.018 6 C -0.029 4.029 7 C -0.093 4.093 8 C 0.063 3.937 9 N -0.540 5.540 10 C 0.201 3.799 11 C -0.541 4.541 12 H 0.060 0.940 13 C 0.020 3.980 14 N -0.923 5.923 15 Si 0.943 3.057 16 H -0.264 1.264 17 H -0.285 1.285 18 H -0.282 1.282 19 C 0.104 3.896 20 C -0.122 4.122 21 C -0.069 4.069 22 C -0.180 4.180 23 C 0.086 3.914 24 N -0.509 5.509 25 C 0.103 3.897 26 O -0.190 6.190 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.086 0.914 38 H -0.005 1.005 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.037 0.963 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.147 0.853 45 H 0.182 0.818 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 -5.274 -6.327 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 C -0.245 4.245 4 C -0.249 4.249 5 C -0.068 4.068 6 C -0.066 4.066 7 C -0.131 4.131 8 C -0.065 4.065 9 N -0.263 5.263 10 C 0.075 3.925 11 C -0.580 4.580 12 H 0.078 0.922 13 C -0.180 4.180 14 N -0.563 5.563 15 Si 0.769 3.231 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.208 1.208 19 C -0.024 4.024 20 C -0.125 4.125 21 C -0.096 4.096 22 C -0.200 4.200 23 C -0.071 4.071 24 N -0.217 5.217 25 C -0.054 4.054 26 O -0.088 6.088 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.183 0.817 31 H 0.164 0.836 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.013 0.987 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.115 0.885 43 H 0.133 0.867 44 H 0.165 0.835 45 H 0.199 0.801 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.183 -6.159 -5.596 13.939 hybrid contribution 2.627 2.127 -0.881 3.493 sum -8.556 -4.031 -6.477 11.463 Atomic orbital electron populations 1.20464 0.82231 1.05104 1.04720 1.23235 0.95688 0.83694 1.05451 1.21862 0.92306 1.00540 1.09805 1.21850 0.99096 0.94496 1.09434 1.22702 0.83277 0.95065 1.05713 1.20097 0.90633 0.98165 0.97722 1.21332 0.97654 0.99001 0.95115 1.21988 0.96167 0.98996 0.89363 1.62460 1.40801 1.05346 1.17683 1.19414 0.91419 0.87347 0.94341 1.21905 1.09315 1.17160 1.09603 0.92177 1.25640 1.00450 0.96294 0.95618 1.70078 1.39507 1.23399 1.23364 0.85732 0.80102 0.78043 0.79191 1.18842 1.21082 1.20770 1.20852 0.96416 0.93501 0.91618 1.20868 0.95931 0.97682 0.97982 1.21723 0.97133 0.95961 0.94794 1.22343 1.02117 0.99616 0.95913 1.23124 0.90049 0.93447 1.00507 1.67692 1.21148 1.26208 1.06699 1.22819 0.97288 0.94175 0.91091 1.83939 1.16709 1.36076 1.72027 0.88544 0.90087 0.87681 0.81746 0.83643 0.88410 0.88306 0.92247 0.94435 0.94704 0.89570 0.98653 0.96921 0.92953 0.94508 0.88516 0.86651 0.83507 0.80106 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.42 71.24 0.74 -0.27 16 2 C -0.03 -0.78 7.32 24.83 0.18 -0.60 16 3 C -0.23 -5.94 10.81 22.19 0.24 -5.70 16 4 C -0.23 -6.97 10.81 22.19 0.24 -6.73 16 5 C -0.02 -0.55 6.58 24.84 0.16 -0.38 16 6 C -0.03 -0.79 5.75 29.85 0.17 -0.62 16 7 C -0.09 -3.14 5.26 30.59 0.16 -2.98 16 8 C 0.06 2.16 4.80 86.30 0.41 2.57 16 9 N -0.54 -21.56 4.66 -905.36 -4.22 -25.78 16 10 C 0.20 10.03 4.64 85.56 0.40 10.43 16 11 C -0.54 -27.80 7.26 25.60 0.19 -27.61 16 12 H 0.06 3.02 5.95 -2.91 -0.02 3.00 16 13 C 0.02 1.04 5.46 84.65 0.46 1.51 16 14 N -0.92 -53.14 13.29 21.45 0.28 -52.85 16 15 Si 0.94 42.19 29.54 68.60 2.03 44.21 16 16 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 19 C 0.10 3.69 4.96 85.55 0.42 4.12 16 20 C -0.12 -4.40 4.90 -19.78 -0.10 -4.49 16 21 C -0.07 -2.64 8.07 22.46 0.18 -2.46 16 22 C -0.18 -5.78 10.11 22.36 0.23 -5.56 16 23 C 0.09 2.53 11.18 84.69 0.95 3.48 16 24 N -0.51 -16.69 10.36 -195.84 -2.03 -18.72 16 25 C 0.10 3.36 10.86 84.67 0.92 4.28 16 26 O -0.19 -5.67 10.65 -2.57 -0.03 -5.69 16 27 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 31 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.53 6.74 -2.38 -0.02 1.52 16 36 H 0.03 1.33 6.12 -2.39 -0.01 1.31 16 37 H 0.09 2.40 7.81 -2.39 -0.02 2.38 16 38 H 0.00 -0.26 6.68 -2.39 -0.02 -0.27 16 39 H 0.01 0.70 5.92 -2.39 -0.01 0.68 16 40 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.04 1.43 6.57 -2.39 -0.02 1.42 16 42 H 0.10 2.76 7.81 -2.39 -0.02 2.74 16 43 H 0.12 4.99 7.94 -2.91 -0.02 4.97 16 44 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 45 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 46 H 0.17 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -65.61 377.99 2.96 -62.64 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.96 Total: 27.20 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 5.96 Total: -31.02 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -5.96 Total: -97.35 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.03 Total: -5.69 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -65.61 2.96 -62.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207945184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.523 kcal (2) G-P(sol) polarization free energy of solvation -65.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds