Wall clock time and date at job start Tue Mar 31 2020 11:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47030 * 2 1 4 4 C 1.38381 * 119.84999 * 265.22869 * 3 2 1 5 5 C 1.37931 * 120.14410 * 180.27857 * 4 3 2 6 6 C 1.39597 * 119.85424 * 359.74892 * 5 4 3 7 7 C 1.47844 * 120.14830 * 180.02562 * 6 5 4 8 8 O 1.21551 * 120.00328 * 134.47833 * 7 6 5 9 9 N 1.34781 * 119.99481 * 314.48554 * 7 6 5 10 10 C 1.46506 * 119.99569 * 185.87619 * 9 7 6 11 11 C 1.50695 * 109.47094 * 89.99848 * 10 9 7 12 12 H 1.08008 * 120.00264 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00155 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47174 * 89.99707 * 15 13 11 17 17 H 1.48500 * 109.46779 * 210.00047 * 15 13 11 18 18 H 1.48499 * 109.46916 * 329.99459 * 15 13 11 19 19 C 1.46493 * 120.00414 * 5.87294 * 9 7 6 20 20 C 1.53000 * 109.47412 * 98.09219 * 19 9 7 21 21 C 1.47196 * 109.47513 * 185.43279 * 20 19 9 22 22 N 6.84961 * 125.29045 * 303.88477 * 2 1 3 23 23 C 1.39553 * 119.71118 * 359.97438 * 6 5 4 24 24 C 1.37983 * 119.85210 * 0.02562 * 23 6 5 25 25 C 1.50703 * 119.92880 * 179.97438 * 24 23 6 26 26 C 1.52992 * 109.47045 * 264.99996 * 25 24 23 27 27 H 1.09001 * 109.47284 * 300.00518 * 1 2 3 28 28 H 1.09001 * 109.47266 * 60.00094 * 1 2 3 29 29 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47046 * 239.99583 * 2 1 3 31 31 H 1.09000 * 109.46879 * 119.99530 * 2 1 3 32 32 H 1.08000 * 119.92962 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.07530 * 179.72604 * 5 4 3 34 34 H 1.09001 * 109.46922 * 209.99350 * 10 9 7 35 35 H 1.08996 * 109.47372 * 329.99730 * 10 9 7 36 36 H 0.97005 * 120.00186 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47107 * 218.09701 * 19 9 7 38 38 H 1.09007 * 109.46872 * 338.09401 * 19 9 7 39 39 H 1.09001 * 109.47251 * 305.43948 * 20 19 9 40 40 H 1.09009 * 109.46655 * 65.43310 * 20 19 9 41 41 H 1.07998 * 120.07701 * 180.02562 * 23 6 5 42 42 H 1.08997 * 109.46855 * 144.99881 * 25 24 23 43 43 H 1.08997 * 109.46960 * 24.99648 * 25 24 23 44 44 H 1.09006 * 109.47170 * 299.99845 * 26 25 24 45 45 H 1.08999 * 109.47724 * 59.99795 * 26 25 24 46 46 H 1.09002 * 109.47284 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3560 2.0370 -1.1961 5 6 2.8218 3.3352 -1.2026 6 6 2.9614 4.0296 0.0004 7 6 3.4594 5.4216 0.0008 8 8 2.9006 6.2669 0.6721 9 7 4.5332 5.7533 -0.7433 10 6 5.1052 7.0984 -0.6449 11 6 6.1600 7.1183 0.4312 12 1 6.3818 6.2189 0.9867 13 6 6.8419 8.2845 0.7067 14 7 6.5722 9.3794 0.0300 15 14 8.1499 8.3089 2.0402 16 1 9.4684 7.9708 1.4465 17 1 8.2128 9.6628 2.6470 18 1 7.8082 7.3126 3.0870 19 6 5.1283 4.7688 -1.6503 20 6 4.6115 5.0061 -3.0707 21 6 5.1057 3.9400 -3.9572 22 7 5.4872 3.1171 -4.6413 23 6 2.6277 3.4043 1.2025 24 6 2.1629 2.1052 1.1951 25 6 1.8026 1.4281 2.4924 26 6 2.9969 0.6120 2.9906 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.2476 1.4987 -2.1261 33 1 3.0783 3.8135 -2.1364 34 1 5.5547 7.3728 -1.5993 35 1 4.3185 7.8105 -0.3957 36 1 7.0522 10.1999 0.2236 37 1 6.2134 4.8713 -1.6365 38 1 4.8541 3.7645 -1.3270 39 1 3.5216 4.9992 -3.0667 40 1 4.9675 5.9717 -3.4302 41 1 2.7330 3.9361 2.1366 42 1 0.9515 0.7662 2.3326 43 1 1.5422 2.1818 3.2355 44 1 3.2573 -0.1417 2.2475 45 1 3.8480 1.2739 3.1504 46 1 2.7365 0.1227 3.9292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320623929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:18 Heat of formation + Delta-G solvation = 5.142811 kcal Electronic energy + Delta-G solvation = -26106.433552 eV Core-core repulsion = 22574.766982 eV Total energy + Delta-G solvation = -3531.666570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.35116 -38.69288 -36.92484 -35.33436 -34.67421 -33.52121 -32.84007 -30.96575 -29.96013 -29.36400 -27.27003 -24.84349 -24.02261 -23.94020 -22.66935 -21.61101 -20.88776 -18.69492 -17.74455 -16.60315 -16.54275 -16.36312 -16.01943 -15.36701 -14.81523 -14.66697 -14.40811 -14.14619 -13.90280 -13.74454 -13.61491 -13.50348 -13.26112 -12.96497 -12.68270 -12.54594 -12.46517 -12.38837 -12.04741 -11.93889 -11.73178 -11.54941 -11.44699 -11.26500 -11.22361 -11.01282 -10.88453 -10.80194 -10.63419 -10.59149 -10.21011 -9.72964 -9.14563 -8.77173 -8.50717 -8.45780 -7.86371 -6.10400 -4.15260 1.11127 1.40595 2.71628 2.79664 3.23167 3.27693 3.34897 3.38703 3.59182 3.84693 4.21469 4.40307 4.58765 4.67005 4.79613 4.83750 4.90997 5.06033 5.09545 5.15405 5.15914 5.20786 5.25702 5.28088 5.36589 5.47831 5.51108 5.55137 5.65034 5.69130 5.79407 5.82855 5.87309 5.96091 5.99747 6.10066 6.12486 6.18409 6.38714 6.49300 6.61723 6.90593 6.99338 7.34162 7.41007 7.55801 7.85792 8.15248 8.21782 8.79409 8.94753 9.50406 10.97694 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011905 B = 0.004147 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.342204 B = 6750.703289 C = 8211.680976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.069 4.069 4 C -0.122 4.122 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.551 3.449 8 O -0.528 6.528 9 N -0.589 5.589 10 C 0.243 3.757 11 C -0.531 4.531 12 H 0.059 0.941 13 C 0.064 3.936 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.107 3.893 20 C -0.056 4.056 21 C 0.216 3.784 22 N -0.441 5.441 23 C -0.065 4.065 24 C -0.086 4.086 25 C -0.087 4.087 26 C -0.149 4.149 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.037 0.963 35 H 0.049 0.951 36 H 0.264 0.736 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 -17.274 -1.154 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.070 4.070 4 C -0.140 4.140 5 C -0.126 4.126 6 C -0.118 4.118 7 C 0.338 3.662 8 O -0.405 6.405 9 N -0.320 5.320 10 C 0.125 3.875 11 C -0.570 4.570 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.019 4.019 20 C -0.098 4.098 21 C -0.102 4.102 22 N -0.118 5.118 23 C -0.084 4.084 24 C -0.086 4.086 25 C -0.124 4.124 26 C -0.206 4.206 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.151 0.849 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.397 -17.807 -1.827 20.217 hybrid contribution 0.752 0.557 0.850 1.264 sum -8.645 -17.250 -0.977 19.320 Atomic orbital electron populations 1.21762 0.94746 1.01554 1.02411 1.20619 0.96202 0.92845 1.02950 1.19817 0.98554 0.95963 0.92622 1.20905 1.00618 0.95037 0.97452 1.21689 0.98506 0.94631 0.97822 1.20160 1.02324 0.95071 0.94263 1.18243 0.80629 0.87063 0.80270 1.90772 1.57198 1.50494 1.42032 1.48114 1.28785 1.15488 1.39572 1.19393 0.94151 0.76529 0.97444 1.21423 1.19726 0.96358 1.19457 0.92318 1.24908 0.97278 0.95279 0.96424 1.69918 1.41732 1.00610 1.40880 0.86515 0.81596 0.77476 0.81973 1.20610 1.21071 1.19871 1.21548 1.00212 0.93865 0.86269 1.20028 1.02262 0.94365 0.93098 1.29044 0.93345 0.94060 0.93752 1.81206 1.09183 1.11098 1.10362 1.21067 0.96020 0.93702 0.97611 1.19634 1.00272 0.93925 0.94737 1.20587 0.98641 0.99291 0.93894 1.21776 0.98158 0.99999 1.00641 0.92340 0.92484 0.92514 0.91158 0.90588 0.85976 0.84918 0.94528 0.93277 0.92632 0.88909 0.89546 0.87152 0.86048 0.85273 0.90714 0.90900 0.92532 0.92267 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.72 37.16 0.36 -0.74 16 2 C -0.09 -0.74 5.38 -27.88 -0.15 -0.89 16 3 C -0.07 -0.76 5.14 -104.53 -0.54 -1.30 16 4 C -0.12 -1.38 9.66 -39.64 -0.38 -1.76 16 5 C -0.11 -1.39 7.41 -39.19 -0.29 -1.68 16 6 C -0.11 -1.82 5.09 -104.97 -0.53 -2.35 16 7 C 0.55 10.95 7.27 -12.33 -0.09 10.86 16 8 O -0.53 -12.80 16.54 5.32 0.09 -12.72 16 9 N -0.59 -11.25 2.46 -176.18 -0.43 -11.68 16 10 C 0.24 5.80 5.22 -5.19 -0.03 5.77 16 11 C -0.53 -14.20 9.39 -34.44 -0.32 -14.53 16 12 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 15 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.11 1.54 4.83 -4.05 -0.02 1.52 16 20 C -0.06 -0.64 5.10 -29.52 -0.15 -0.79 16 21 C 0.22 2.67 15.38 -20.76 -0.32 2.35 16 22 N -0.44 -6.47 18.54 42.16 0.78 -5.69 16 23 C -0.07 -0.97 9.32 -39.18 -0.37 -1.33 16 24 C -0.09 -1.03 5.13 -104.68 -0.54 -1.56 16 25 C -0.09 -0.83 5.38 -27.89 -0.15 -0.98 16 26 C -0.15 -1.31 9.71 37.15 0.36 -0.95 16 27 H 0.06 0.45 6.78 -51.93 -0.35 0.10 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.53 8.05 -51.93 -0.42 0.12 16 31 H 0.08 0.58 5.57 -51.93 -0.29 0.29 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.50 3.64 -52.48 -0.19 1.31 16 34 H 0.04 0.85 7.99 -51.93 -0.42 0.44 16 35 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 38 H 0.09 1.15 5.03 -51.93 -0.26 0.89 16 39 H 0.11 1.08 6.19 -51.93 -0.32 0.76 16 40 H 0.12 1.32 8.06 -51.92 -0.42 0.90 16 41 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 42 H 0.07 0.61 5.61 -51.93 -0.29 0.32 16 43 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 44 H 0.06 0.48 6.76 -51.93 -0.35 0.12 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -32.19 378.28 -8.01 -40.20 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.61 Total: -0.61 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.25 Total: -6.72 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 1.08 Total: -42.00 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.19 -8.01 -40.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320623929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.342 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds