Wall clock time and date at job start Tue Mar 31 2020 11:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47030 * 2 1 4 4 C 1.38381 * 119.84999 * 265.22869 * 3 2 1 5 5 C 1.37931 * 120.14410 * 180.27857 * 4 3 2 6 6 C 1.39597 * 119.85424 * 359.74892 * 5 4 3 7 7 C 1.47844 * 120.14830 * 180.02562 * 6 5 4 8 8 O 1.21551 * 120.00328 * 134.47833 * 7 6 5 9 9 N 1.34781 * 119.99481 * 314.48554 * 7 6 5 10 10 C 1.46506 * 119.99569 * 185.87619 * 9 7 6 11 11 C 1.50695 * 109.47094 * 89.99848 * 10 9 7 12 12 H 1.08008 * 120.00264 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00155 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47174 * 89.99707 * 15 13 11 17 17 H 1.48500 * 109.46779 * 210.00047 * 15 13 11 18 18 H 1.48499 * 109.46916 * 329.99459 * 15 13 11 19 19 C 1.46493 * 120.00414 * 5.87294 * 9 7 6 20 20 C 1.53000 * 109.47412 * 98.09219 * 19 9 7 21 21 C 1.47196 * 109.47513 * 185.43279 * 20 19 9 22 22 N 6.84961 * 125.29045 * 303.88477 * 2 1 3 23 23 C 1.39553 * 119.71118 * 359.97438 * 6 5 4 24 24 C 1.37983 * 119.85210 * 0.02562 * 23 6 5 25 25 C 1.50703 * 119.92880 * 179.97438 * 24 23 6 26 26 C 1.52992 * 109.47045 * 264.99996 * 25 24 23 27 27 H 1.09001 * 109.47284 * 300.00518 * 1 2 3 28 28 H 1.09001 * 109.47266 * 60.00094 * 1 2 3 29 29 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47046 * 239.99583 * 2 1 3 31 31 H 1.09000 * 109.46879 * 119.99530 * 2 1 3 32 32 H 1.08000 * 119.92962 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.07530 * 179.72604 * 5 4 3 34 34 H 1.09001 * 109.46922 * 209.99350 * 10 9 7 35 35 H 1.08996 * 109.47372 * 329.99730 * 10 9 7 36 36 H 0.97005 * 120.00186 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47107 * 218.09701 * 19 9 7 38 38 H 1.09007 * 109.46872 * 338.09401 * 19 9 7 39 39 H 1.09001 * 109.47251 * 305.43948 * 20 19 9 40 40 H 1.09009 * 109.46655 * 65.43310 * 20 19 9 41 41 H 1.07998 * 120.07701 * 180.02562 * 23 6 5 42 42 H 1.08997 * 109.46855 * 144.99881 * 25 24 23 43 43 H 1.08997 * 109.46960 * 24.99648 * 25 24 23 44 44 H 1.09006 * 109.47170 * 299.99845 * 26 25 24 45 45 H 1.08999 * 109.47724 * 59.99795 * 26 25 24 46 46 H 1.09002 * 109.47284 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3560 2.0370 -1.1961 5 6 2.8218 3.3352 -1.2026 6 6 2.9614 4.0296 0.0004 7 6 3.4594 5.4216 0.0008 8 8 2.9006 6.2669 0.6721 9 7 4.5332 5.7533 -0.7433 10 6 5.1052 7.0984 -0.6449 11 6 6.1600 7.1183 0.4312 12 1 6.3818 6.2189 0.9867 13 6 6.8419 8.2845 0.7067 14 7 6.5722 9.3794 0.0300 15 14 8.1499 8.3089 2.0402 16 1 9.4684 7.9708 1.4465 17 1 8.2128 9.6628 2.6470 18 1 7.8082 7.3126 3.0870 19 6 5.1283 4.7688 -1.6503 20 6 4.6115 5.0061 -3.0707 21 6 5.1057 3.9400 -3.9572 22 7 5.4872 3.1171 -4.6413 23 6 2.6277 3.4043 1.2025 24 6 2.1629 2.1052 1.1951 25 6 1.8026 1.4281 2.4924 26 6 2.9969 0.6120 2.9906 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.2476 1.4987 -2.1261 33 1 3.0783 3.8135 -2.1364 34 1 5.5547 7.3728 -1.5993 35 1 4.3185 7.8105 -0.3957 36 1 7.0522 10.1999 0.2236 37 1 6.2134 4.8713 -1.6365 38 1 4.8541 3.7645 -1.3270 39 1 3.5216 4.9992 -3.0667 40 1 4.9675 5.9717 -3.4302 41 1 2.7330 3.9361 2.1366 42 1 0.9515 0.7662 2.3326 43 1 1.5422 2.1818 3.2355 44 1 3.2573 -0.1417 2.2475 45 1 3.8480 1.2739 3.1504 46 1 2.7365 0.1227 3.9292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320623929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:17 Heat of formation + Delta-G solvation = -11.495484 kcal Electronic energy + Delta-G solvation = -26107.155043 eV Core-core repulsion = 22574.766982 eV Total energy + Delta-G solvation = -3532.388061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57105 -39.94328 -38.13287 -36.78666 -35.72908 -34.72513 -34.31185 -32.34279 -30.95497 -30.38228 -28.96888 -25.92321 -25.42854 -25.03139 -23.98400 -22.47453 -21.97846 -20.06424 -18.94903 -18.42640 -17.81296 -17.68247 -16.98617 -16.81928 -16.20153 -15.89269 -15.73497 -15.40107 -14.81057 -14.76317 -14.65356 -14.41216 -14.33972 -14.13788 -14.08113 -13.72250 -13.59944 -13.37722 -13.24230 -13.14331 -13.01566 -12.81908 -12.75146 -12.57441 -12.33213 -12.19650 -12.11076 -12.01742 -11.97781 -11.72243 -11.59037 -11.40042 -10.71717 -10.59863 -9.81718 -9.56932 -9.45380 -8.20028 -6.32691 0.03584 0.40515 1.38880 1.41114 1.50575 1.63745 1.78460 1.82003 2.22628 2.42577 2.75484 3.04787 3.11956 3.60499 3.76134 3.84653 3.93620 3.98542 4.02570 4.16289 4.19703 4.37570 4.49805 4.52159 4.57103 4.58388 4.62716 4.74667 4.79366 4.87012 4.96702 5.03247 5.06700 5.09175 5.13410 5.13549 5.26558 5.30744 5.36576 5.40468 5.50953 5.52576 5.56637 5.70281 5.83202 6.00415 6.09896 6.54046 6.63435 6.76000 7.25910 7.41693 8.86942 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011905 B = 0.004147 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.342204 B = 6750.703289 C = 8211.680976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.061 4.061 4 C -0.118 4.118 5 C -0.104 4.104 6 C -0.137 4.137 7 C 0.547 3.453 8 O -0.587 6.587 9 N -0.588 5.588 10 C 0.258 3.742 11 C -0.546 4.546 12 H 0.051 0.949 13 C 0.015 3.985 14 N -0.923 5.923 15 Si 0.959 3.041 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.276 1.276 19 C 0.105 3.895 20 C -0.045 4.045 21 C 0.243 3.757 22 N -0.473 5.473 23 C -0.085 4.085 24 C -0.085 4.085 25 C -0.087 4.087 26 C -0.146 4.146 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.043 0.957 35 H 0.007 0.993 36 H 0.267 0.733 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.961 -20.407 -1.865 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.061 4.061 4 C -0.136 4.136 5 C -0.122 4.122 6 C -0.140 4.140 7 C 0.337 3.663 8 O -0.468 6.468 9 N -0.317 5.317 10 C 0.137 3.863 11 C -0.584 4.584 12 H 0.069 0.931 13 C -0.185 4.185 14 N -0.562 5.562 15 Si 0.784 3.216 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.201 1.201 19 C -0.019 4.019 20 C -0.085 4.085 21 C -0.075 4.075 22 N -0.151 5.151 23 C -0.104 4.104 24 C -0.085 4.085 25 C -0.124 4.124 26 C -0.203 4.203 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.599 -20.984 -2.571 23.218 hybrid contribution 0.760 1.468 1.084 1.977 sum -8.839 -19.516 -1.487 21.476 Atomic orbital electron populations 1.21762 0.93942 1.02654 1.02047 1.20712 0.96730 0.90775 1.04278 1.20233 0.96663 0.97295 0.91911 1.21260 0.99247 0.94255 0.98850 1.21798 0.98261 0.95234 0.96955 1.19838 1.05079 0.93035 0.96069 1.18932 0.80043 0.88400 0.78962 1.90723 1.59118 1.52565 1.44409 1.47988 1.28604 1.14722 1.40394 1.18900 0.92175 0.78391 0.96798 1.21718 1.20359 0.96215 1.20127 0.93086 1.25705 0.99355 0.94959 0.98485 1.70017 1.42823 1.01120 1.42281 0.85549 0.79518 0.77338 0.79229 1.19033 1.20756 1.20060 1.21728 0.99835 0.93300 0.87075 1.19909 1.03441 0.94439 0.90746 1.28894 0.92273 0.93295 0.93009 1.81247 1.10305 1.12142 1.11404 1.21055 0.97608 0.95169 0.96592 1.19861 0.99321 0.92741 0.96540 1.20653 0.99698 0.99444 0.92571 1.21761 0.97050 0.99708 1.01791 0.92808 0.92831 0.90720 0.89632 0.89559 0.83023 0.83551 0.93948 0.97497 0.92423 0.89394 0.87982 0.85016 0.85214 0.87419 0.88638 0.91515 0.91647 0.94093 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.72 71.98 0.70 -0.96 16 2 C -0.09 -1.11 5.38 29.85 0.16 -0.94 16 3 C -0.06 -1.16 5.14 -19.81 -0.10 -1.26 16 4 C -0.12 -2.30 9.66 22.23 0.21 -2.08 16 5 C -0.10 -2.51 7.41 22.53 0.17 -2.34 16 6 C -0.14 -4.41 5.09 -20.09 -0.10 -4.51 16 7 C 0.55 22.82 7.27 86.79 0.63 23.45 16 8 O -0.59 -30.56 16.54 -3.88 -0.06 -30.62 16 9 N -0.59 -23.17 2.46 -829.57 -2.04 -25.21 16 10 C 0.26 12.84 5.22 85.63 0.45 13.29 16 11 C -0.55 -30.12 9.39 25.60 0.24 -29.88 16 12 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 13 C 0.01 0.81 5.46 84.65 0.46 1.27 16 14 N -0.92 -53.63 13.29 21.45 0.28 -53.34 16 15 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 C 0.11 2.96 4.83 86.38 0.42 3.37 16 20 C -0.04 -0.93 5.10 28.79 0.15 -0.79 16 21 C 0.24 5.47 15.38 89.44 1.38 6.84 16 22 N -0.47 -12.91 18.54 20.01 0.37 -12.54 16 23 C -0.09 -2.60 9.32 22.53 0.21 -2.39 16 24 C -0.08 -1.93 5.13 -19.90 -0.10 -2.03 16 25 C -0.09 -1.53 5.38 29.85 0.16 -1.36 16 26 C -0.15 -2.31 9.71 71.98 0.70 -1.61 16 27 H 0.05 0.66 6.78 -2.39 -0.02 0.65 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.88 8.05 -2.39 -0.02 0.86 16 31 H 0.09 0.95 5.57 -2.39 -0.01 0.94 16 32 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.15 2.98 3.64 -2.91 -0.01 2.97 16 34 H 0.04 2.04 7.99 -2.39 -0.02 2.02 16 35 H 0.01 0.40 7.35 -2.39 -0.02 0.38 16 36 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 37 H 0.09 2.58 8.13 -2.39 -0.02 2.56 16 38 H 0.10 2.59 5.03 -2.38 -0.01 2.57 16 39 H 0.13 2.27 6.19 -2.39 -0.01 2.26 16 40 H 0.13 2.62 8.06 -2.38 -0.02 2.60 16 41 H 0.11 3.64 8.06 -2.91 -0.02 3.61 16 42 H 0.10 1.29 5.61 -2.39 -0.01 1.28 16 43 H 0.07 1.26 8.05 -2.39 -0.02 1.24 16 44 H 0.06 0.92 6.76 -2.38 -0.02 0.90 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -73.17 378.28 7.29 -65.88 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.99 Total: 11.81 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.73 Total: -1.94 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -1.39 Total: -91.09 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.06 Total: -30.62 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.17 7.29 -65.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320623929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.386 kcal (2) G-P(sol) polarization free energy of solvation -73.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds