Wall clock time and date at job start Tue Mar 31 2020 11:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34239 * 126.50342 * 2 1 4 4 N 1.36835 * 109.93059 * 179.71006 * 3 2 1 5 5 C 1.46502 * 125.06342 * 180.27069 * 4 3 2 6 6 C 1.50702 * 109.46833 * 264.97326 * 5 4 3 7 7 O 1.21283 * 119.99820 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00291 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00459 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47170 * 90.00072 * 9 8 6 11 11 H 1.08003 * 120.00068 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00268 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99670 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00412 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47024 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46966 * 119.99928 * 14 12 10 17 17 H 1.48498 * 109.47495 * 240.00330 * 14 12 10 18 18 C 1.46499 * 119.99939 * 0.02562 * 8 6 5 19 19 C 1.52997 * 109.47724 * 119.99793 * 18 8 6 20 20 C 1.53008 * 109.47210 * 239.99939 * 18 8 6 21 21 C 1.37688 * 109.87251 * 0.26493 * 4 3 2 22 22 C 1.39125 * 133.50694 * 180.02562 * 21 4 3 23 23 C 1.37748 * 119.78247 * 179.97438 * 22 21 4 24 24 C 1.38837 * 120.66139 * 0.02562 * 23 22 21 25 25 C 1.36626 * 120.53059 * 0.02562 * 24 23 22 26 26 C 1.39630 * 119.76271 * 359.95930 * 25 24 23 27 27 H 1.09006 * 109.46635 * 90.02116 * 1 2 3 28 28 H 1.08997 * 109.47269 * 210.01974 * 1 2 3 29 29 H 1.08998 * 109.46850 * 330.02438 * 1 2 3 30 30 H 1.08002 * 125.03689 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.47138 * 24.97145 * 5 4 3 32 32 H 1.08998 * 109.47142 * 144.97685 * 5 4 3 33 33 H 1.09004 * 109.46983 * 210.00323 * 9 8 6 34 34 H 1.09000 * 109.47095 * 330.00132 * 9 8 6 35 35 H 0.96999 * 119.99676 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.47042 * 359.97438 * 18 8 6 37 37 H 1.09005 * 109.46930 * 60.00054 * 19 18 8 38 38 H 1.08994 * 109.47631 * 180.02562 * 19 18 8 39 39 H 1.09004 * 109.46664 * 300.00630 * 19 18 8 40 40 H 1.09001 * 109.46792 * 59.99926 * 20 18 8 41 41 H 1.09002 * 109.46893 * 179.97438 * 20 18 8 42 42 H 1.08990 * 109.46618 * 299.99835 * 20 18 8 43 43 H 1.08008 * 120.11037 * 359.97438 * 22 21 4 44 44 H 1.07992 * 119.66845 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.73163 * 179.97438 * 24 23 22 46 46 H 1.07998 * 120.11907 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6887 0.0065 5 6 4.7657 1.5980 0.0141 6 6 5.2444 1.8143 -1.3984 7 8 4.6812 1.2635 -2.3206 8 7 6.2977 2.6205 -1.6370 9 6 6.7628 2.8312 -3.0101 10 6 6.0441 4.0131 -3.6081 11 1 5.3142 4.5536 -3.0236 12 6 6.3183 4.4046 -4.9014 13 7 7.2067 3.7461 -5.6133 14 14 5.4270 5.8692 -5.6429 15 1 4.4839 6.4325 -4.6436 16 1 6.4164 6.9070 -6.0291 17 1 4.6724 5.4327 -6.8451 18 6 6.9776 3.2862 -0.5231 19 6 8.4441 2.8514 -0.4874 20 6 6.8999 4.8027 -0.7112 21 6 3.6963 -0.6858 0.0050 22 6 4.7588 -1.5840 0.0099 23 6 4.5096 -2.9387 0.0070 24 6 3.2069 -3.4189 -0.0013 25 6 2.1487 -2.5548 -0.0073 26 6 2.3784 -1.1776 -0.0042 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3633 0.8902 0.5135 30 1 1.9635 2.1035 -0.0004 31 1 4.4700 2.5533 0.4478 32 1 5.5697 1.1628 0.6076 33 1 7.8358 3.0230 -3.0049 34 1 6.5556 1.9413 -3.6045 35 1 7.3999 4.0217 -6.5230 36 1 6.4939 3.0114 0.4143 37 1 8.9276 3.1265 -1.4248 38 1 8.9498 3.3463 0.3416 39 1 8.4995 1.7710 -0.3535 40 1 5.8551 5.1125 -0.7365 41 1 7.4054 5.2980 0.1178 42 1 7.3833 5.0777 -1.6485 43 1 5.7758 -1.2202 0.0159 44 1 5.3357 -3.6342 0.0104 45 1 3.0288 -4.4842 -0.0039 46 1 1.1381 -2.9357 -0.0141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322333023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:11 Heat of formation + Delta-G solvation = 23.870137 kcal Electronic energy + Delta-G solvation = -26488.849928 eV Core-core repulsion = 22957.995436 eV Total energy + Delta-G solvation = -3530.854493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26214 -39.18947 -36.87629 -36.01917 -33.62136 -32.85156 -30.97933 -30.37865 -29.73852 -28.60395 -27.18055 -26.81313 -25.08365 -22.96906 -22.40995 -21.56819 -21.10752 -19.40609 -18.35077 -17.11364 -16.59970 -16.48280 -16.37807 -15.30235 -15.04718 -14.72516 -14.54342 -14.13996 -13.75561 -13.67019 -13.53989 -13.28566 -13.05303 -12.89383 -12.64920 -12.49290 -12.34107 -12.00031 -11.87077 -11.78445 -11.67916 -11.31008 -11.24929 -11.24735 -11.00826 -10.92222 -10.68026 -10.61546 -10.47518 -10.08710 -9.60152 -9.39615 -9.03707 -8.46934 -7.95688 -7.76914 -7.33871 -6.08258 -4.11914 1.31682 1.81753 2.74320 2.97406 3.19384 3.26057 3.34658 3.37455 3.80549 4.11383 4.40600 4.78010 4.82914 4.85276 4.92911 5.05050 5.13249 5.14707 5.26422 5.26881 5.40638 5.44067 5.48873 5.51654 5.68593 5.80483 5.85887 5.90641 5.92060 6.02627 6.04537 6.09986 6.15209 6.26571 6.32847 6.48913 6.65329 6.76950 6.85972 6.93594 6.99006 7.01369 7.39129 7.40902 7.43550 7.49824 7.87890 8.18973 8.29237 8.82478 8.97077 9.52372 11.00052 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003900 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.272352 B = 7177.550886 C = 7761.827855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.182 4.182 3 C 0.065 3.935 4 N -0.462 5.462 5 C 0.089 3.911 6 C 0.484 3.516 7 O -0.519 6.519 8 N -0.589 5.589 9 C 0.247 3.753 10 C -0.520 4.520 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.131 3.869 19 C -0.162 4.162 20 C -0.157 4.157 21 C 0.114 3.886 22 C -0.122 4.122 23 C -0.105 4.105 24 C -0.152 4.152 25 C -0.073 4.073 26 C -0.102 4.102 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.164 0.836 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 -6.360 16.579 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.189 4.189 3 C -0.060 4.060 4 N -0.144 5.144 5 C -0.037 4.037 6 C 0.268 3.732 7 O -0.395 6.395 8 N -0.322 5.322 9 C 0.128 3.872 10 C -0.559 4.559 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.209 1.209 18 C 0.027 3.973 19 C -0.220 4.220 20 C -0.215 4.215 21 C 0.008 3.992 22 C -0.142 4.142 23 C -0.124 4.124 24 C -0.172 4.172 25 C -0.092 4.092 26 C -0.107 4.107 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.181 0.819 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.759 -6.400 15.888 17.777 hybrid contribution -0.194 1.073 -0.660 1.274 sum -4.953 -5.328 15.228 16.876 Atomic orbital electron populations 1.20031 0.89672 1.01654 1.01517 1.20162 0.94995 0.90762 1.12970 1.21538 0.81671 0.99147 1.03641 1.43380 1.05131 1.03756 1.62098 1.21755 0.89057 0.95152 0.97754 1.20524 0.81639 0.80793 0.90242 1.90754 1.55203 1.48503 1.45013 1.48368 1.29866 1.44347 1.09661 1.19268 0.94965 0.97672 0.75279 1.21433 1.23007 1.13198 0.98249 0.92373 1.24926 0.95275 0.97111 0.96810 1.69940 1.33177 1.40125 1.10070 0.86489 0.79584 0.82311 0.79316 1.19853 1.20979 1.20913 1.21036 0.93293 0.93946 0.89039 1.22161 0.96027 1.00973 1.02875 1.22144 1.02342 0.94090 1.02940 1.18165 0.95429 0.82671 1.02984 1.20012 0.96571 0.92294 1.05365 1.20720 0.96869 0.94007 1.00807 1.20536 0.92515 0.99130 1.04982 1.20169 0.98756 0.90894 0.99376 1.19045 0.91859 0.93147 1.06623 0.92054 0.92190 0.92183 0.81881 0.86956 0.87568 0.94621 0.94109 0.92786 0.91163 0.91103 0.92087 0.92904 0.92740 0.93091 0.89864 0.86757 0.86113 0.86449 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.41 36.00 0.37 -0.42 16 2 C -0.18 -2.68 6.32 -102.71 -0.65 -3.33 16 3 C 0.07 0.97 11.19 -16.73 -0.19 0.79 16 4 N -0.46 -7.45 2.27 -115.71 -0.26 -7.71 16 5 C 0.09 1.30 4.79 -5.19 -0.02 1.27 16 6 C 0.48 9.76 7.74 -10.99 -0.09 9.68 16 7 O -0.52 -13.27 16.00 5.55 0.09 -13.18 16 8 N -0.59 -11.74 2.39 -167.46 -0.40 -12.14 16 9 C 0.25 6.21 4.59 -5.19 -0.02 6.18 16 10 C -0.52 -14.15 7.83 -34.44 -0.27 -14.42 16 11 H 0.06 1.58 7.63 -52.48 -0.40 1.18 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 14 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.13 1.96 3.17 -67.93 -0.22 1.75 16 19 C -0.16 -2.20 9.17 37.16 0.34 -1.86 16 20 C -0.16 -2.40 8.47 37.16 0.31 -2.08 16 21 C 0.11 1.90 6.80 -83.99 -0.57 1.33 16 22 C -0.12 -1.87 10.00 -39.43 -0.39 -2.26 16 23 C -0.10 -1.40 10.01 -39.54 -0.40 -1.80 16 24 C -0.15 -1.95 9.97 -39.94 -0.40 -2.35 16 25 C -0.07 -1.01 10.05 -39.64 -0.40 -1.41 16 26 C -0.10 -1.63 6.35 -105.14 -0.67 -2.30 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.11 1.32 7.76 -51.93 -0.40 0.92 16 32 H 0.11 1.27 7.79 -51.93 -0.40 0.87 16 33 H 0.04 0.90 6.43 -51.93 -0.33 0.57 16 34 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.07 0.82 5.77 -51.93 -0.30 0.52 16 37 H 0.07 1.12 6.66 -51.93 -0.35 0.77 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.53 6.92 -51.93 -0.36 1.18 16 43 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -34.31 379.11 -9.63 -43.94 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.14 Total: 1.88 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.35 Total: -9.63 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.07 Total: -45.31 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.31 -9.63 -43.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322333023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.813 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds