Wall clock time and date at job start Tue Mar 31 2020 11:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34239 * 126.50342 * 2 1 4 4 N 1.36835 * 109.93059 * 179.71006 * 3 2 1 5 5 C 1.46502 * 125.06342 * 180.27069 * 4 3 2 6 6 C 1.50702 * 109.46833 * 264.97326 * 5 4 3 7 7 O 1.21283 * 119.99820 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00291 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00459 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47170 * 90.00072 * 9 8 6 11 11 H 1.08003 * 120.00068 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00268 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99670 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00412 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47024 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46966 * 119.99928 * 14 12 10 17 17 H 1.48498 * 109.47495 * 240.00330 * 14 12 10 18 18 C 1.46499 * 119.99939 * 0.02562 * 8 6 5 19 19 C 1.52997 * 109.47724 * 119.99793 * 18 8 6 20 20 C 1.53008 * 109.47210 * 239.99939 * 18 8 6 21 21 C 1.37688 * 109.87251 * 0.26493 * 4 3 2 22 22 C 1.39125 * 133.50694 * 180.02562 * 21 4 3 23 23 C 1.37748 * 119.78247 * 179.97438 * 22 21 4 24 24 C 1.38837 * 120.66139 * 0.02562 * 23 22 21 25 25 C 1.36626 * 120.53059 * 0.02562 * 24 23 22 26 26 C 1.39630 * 119.76271 * 359.95930 * 25 24 23 27 27 H 1.09006 * 109.46635 * 90.02116 * 1 2 3 28 28 H 1.08997 * 109.47269 * 210.01974 * 1 2 3 29 29 H 1.08998 * 109.46850 * 330.02438 * 1 2 3 30 30 H 1.08002 * 125.03689 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.47138 * 24.97145 * 5 4 3 32 32 H 1.08998 * 109.47142 * 144.97685 * 5 4 3 33 33 H 1.09004 * 109.46983 * 210.00323 * 9 8 6 34 34 H 1.09000 * 109.47095 * 330.00132 * 9 8 6 35 35 H 0.96999 * 119.99676 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.47042 * 359.97438 * 18 8 6 37 37 H 1.09005 * 109.46930 * 60.00054 * 19 18 8 38 38 H 1.08994 * 109.47631 * 180.02562 * 19 18 8 39 39 H 1.09004 * 109.46664 * 300.00630 * 19 18 8 40 40 H 1.09001 * 109.46792 * 59.99926 * 20 18 8 41 41 H 1.09002 * 109.46893 * 179.97438 * 20 18 8 42 42 H 1.08990 * 109.46618 * 299.99835 * 20 18 8 43 43 H 1.08008 * 120.11037 * 359.97438 * 22 21 4 44 44 H 1.07992 * 119.66845 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.73163 * 179.97438 * 24 23 22 46 46 H 1.07998 * 120.11907 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6887 0.0065 5 6 4.7657 1.5980 0.0141 6 6 5.2444 1.8143 -1.3984 7 8 4.6812 1.2635 -2.3206 8 7 6.2977 2.6205 -1.6370 9 6 6.7628 2.8312 -3.0101 10 6 6.0441 4.0131 -3.6081 11 1 5.3142 4.5536 -3.0236 12 6 6.3183 4.4046 -4.9014 13 7 7.2067 3.7461 -5.6133 14 14 5.4270 5.8692 -5.6429 15 1 4.4839 6.4325 -4.6436 16 1 6.4164 6.9070 -6.0291 17 1 4.6724 5.4327 -6.8451 18 6 6.9776 3.2862 -0.5231 19 6 8.4441 2.8514 -0.4874 20 6 6.8999 4.8027 -0.7112 21 6 3.6963 -0.6858 0.0050 22 6 4.7588 -1.5840 0.0099 23 6 4.5096 -2.9387 0.0070 24 6 3.2069 -3.4189 -0.0013 25 6 2.1487 -2.5548 -0.0073 26 6 2.3784 -1.1776 -0.0042 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3633 0.8902 0.5135 30 1 1.9635 2.1035 -0.0004 31 1 4.4700 2.5533 0.4478 32 1 5.5697 1.1628 0.6076 33 1 7.8358 3.0230 -3.0049 34 1 6.5556 1.9413 -3.6045 35 1 7.3999 4.0217 -6.5230 36 1 6.4939 3.0114 0.4143 37 1 8.9276 3.1265 -1.4248 38 1 8.9498 3.3463 0.3416 39 1 8.4995 1.7710 -0.3535 40 1 5.8551 5.1125 -0.7365 41 1 7.4054 5.2980 0.1178 42 1 7.3833 5.0777 -1.6485 43 1 5.7758 -1.2202 0.0159 44 1 5.3357 -3.6342 0.0104 45 1 3.0288 -4.4842 -0.0039 46 1 1.1381 -2.9357 -0.0141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322333023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:10 Heat of formation + Delta-G solvation = 5.059174 kcal Electronic energy + Delta-G solvation = -26489.665633 eV Core-core repulsion = 22957.995436 eV Total energy + Delta-G solvation = -3531.670197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.37805 -40.71756 -37.99321 -37.51613 -35.06745 -34.58230 -32.48537 -31.59321 -30.78163 -29.94177 -28.74749 -27.99715 -26.36703 -24.72516 -23.57313 -22.86790 -22.28863 -20.49127 -19.79512 -18.64711 -18.52207 -17.77186 -17.48104 -16.81077 -16.29990 -16.24196 -16.05960 -15.52310 -14.91686 -14.86659 -14.77518 -14.59345 -14.44049 -14.02762 -13.93022 -13.61195 -13.57533 -13.38855 -13.28290 -13.00960 -12.92531 -12.88291 -12.78263 -12.56119 -12.40773 -12.25822 -12.20799 -12.12094 -11.72284 -11.65141 -11.54696 -10.78112 -10.64768 -10.35341 -9.50067 -9.06252 -8.43073 -8.22926 -6.34756 0.23938 0.72640 1.32843 1.35627 1.46106 1.59988 1.67764 1.89776 2.29247 2.42770 3.02307 3.07588 3.52313 3.73469 3.75975 3.90796 3.93002 4.05377 4.12736 4.25564 4.29078 4.36608 4.47118 4.49366 4.67622 4.79383 4.85454 4.88291 4.90456 4.96320 4.97372 5.03128 5.04024 5.09167 5.18582 5.21492 5.33185 5.40971 5.55578 5.60924 5.61173 5.72111 5.82251 5.90680 5.94336 6.06787 6.34457 6.36012 6.68934 6.76183 7.25860 7.40952 8.84883 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003900 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.272352 B = 7177.550886 C = 7761.827855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.191 4.191 3 C 0.044 3.956 4 N -0.472 5.472 5 C 0.101 3.899 6 C 0.477 3.523 7 O -0.586 6.586 8 N -0.591 5.591 9 C 0.266 3.734 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.961 3.039 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.287 1.287 18 C 0.123 3.877 19 C -0.158 4.158 20 C -0.153 4.153 21 C 0.084 3.916 22 C -0.147 4.147 23 C -0.106 4.106 24 C -0.154 4.154 25 C -0.082 4.082 26 C -0.131 4.131 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.185 0.815 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.027 0.973 34 H -0.014 1.014 35 H 0.265 0.735 36 H 0.118 0.882 37 H 0.037 0.963 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.042 0.958 43 H 0.116 0.884 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 -5.879 19.254 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.198 4.198 3 C -0.080 4.080 4 N -0.154 5.154 5 C -0.024 4.024 6 C 0.264 3.736 7 O -0.466 6.466 8 N -0.323 5.323 9 C 0.145 3.855 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.193 4.193 13 N -0.572 5.572 14 Si 0.786 3.214 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.213 1.213 18 C 0.021 3.979 19 C -0.216 4.216 20 C -0.210 4.210 21 C -0.022 4.022 22 C -0.167 4.167 23 C -0.125 4.125 24 C -0.173 4.173 25 C -0.101 4.101 26 C -0.136 4.136 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.202 0.798 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.045 0.955 34 H 0.004 0.996 35 H 0.073 0.927 36 H 0.136 0.864 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.061 0.939 43 H 0.134 0.866 44 H 0.164 0.836 45 H 0.167 0.833 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.574 -5.900 18.622 20.314 hybrid contribution 0.093 0.823 -1.473 1.690 sum -5.480 -5.077 17.150 18.706 Atomic orbital electron populations 1.20092 0.87488 1.03246 1.01740 1.20652 0.96609 0.90377 1.12145 1.22036 0.81560 1.00380 1.04029 1.43528 1.05682 1.03742 1.62473 1.21828 0.89871 0.97127 0.93595 1.21591 0.80572 0.79251 0.92226 1.90715 1.57253 1.50918 1.47710 1.48380 1.30242 1.44713 1.08933 1.18636 0.94350 0.94550 0.77993 1.21667 1.22639 1.13387 0.98521 0.92595 1.25809 0.96079 0.99993 0.97413 1.70066 1.34736 1.41895 1.10459 0.85461 0.78628 0.79115 0.78196 1.18897 1.19536 1.21299 1.21498 0.94163 0.93456 0.88830 1.22134 0.95054 1.01675 1.02701 1.22088 1.01863 0.94528 1.02561 1.18569 0.96313 0.83371 1.03913 1.20267 0.96584 0.93224 1.06657 1.21127 0.98203 0.93770 0.99408 1.20949 0.91990 1.00687 1.03643 1.20542 1.00311 0.90359 0.98840 1.19518 0.92140 0.94493 1.07453 0.92368 0.90959 0.90277 0.79794 0.83310 0.84493 0.95464 0.99577 0.92655 0.86443 0.94371 0.88187 0.92494 0.93513 0.88925 0.93851 0.86557 0.83583 0.83344 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 10.41 71.24 0.74 -0.69 16 2 C -0.19 -5.49 6.32 -18.63 -0.12 -5.61 16 3 C 0.04 1.28 11.19 83.00 0.93 2.21 16 4 N -0.47 -14.88 2.27 -519.99 -1.18 -16.06 16 5 C 0.10 2.76 4.79 85.63 0.41 3.17 16 6 C 0.48 19.45 7.74 87.66 0.68 20.12 16 7 O -0.59 -31.40 16.00 -3.04 -0.05 -31.44 16 8 N -0.59 -23.84 2.39 -802.13 -1.91 -25.75 16 9 C 0.27 14.11 4.59 85.63 0.39 14.51 16 10 C -0.52 -29.47 7.83 25.60 0.20 -29.27 16 11 H 0.06 3.10 7.63 -2.91 -0.02 3.08 16 12 C 0.01 0.31 5.46 84.65 0.46 0.77 16 13 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 14 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 18 C 0.12 3.42 3.17 44.99 0.14 3.56 16 19 C -0.16 -4.00 9.17 71.98 0.66 -3.34 16 20 C -0.15 -4.37 8.47 71.98 0.61 -3.76 16 21 C 0.08 2.81 6.80 39.03 0.27 3.08 16 22 C -0.15 -4.47 10.00 22.37 0.22 -4.25 16 23 C -0.11 -2.71 10.01 22.30 0.22 -2.49 16 24 C -0.15 -3.67 9.97 22.04 0.22 -3.45 16 25 C -0.08 -2.17 10.05 22.23 0.22 -1.95 16 26 C -0.13 -4.15 6.35 -20.20 -0.13 -4.28 16 27 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.15 2.96 7.76 -2.39 -0.02 2.94 16 32 H 0.14 2.88 7.79 -2.39 -0.02 2.86 16 33 H 0.03 1.48 6.43 -2.39 -0.02 1.46 16 34 H -0.01 -0.88 7.42 -2.39 -0.02 -0.90 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.12 2.22 5.77 -2.38 -0.01 2.20 16 37 H 0.04 1.21 6.66 -2.38 -0.02 1.20 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.04 1.59 6.92 -2.39 -0.02 1.57 16 43 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 45 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 46 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -81.18 379.11 6.27 -74.92 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.96 Total: 19.32 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 6.14 Total: -11.65 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -2.81 Total: -98.22 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.05 Total: -31.44 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -81.18 6.27 -74.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322333023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.978 kcal (2) G-P(sol) polarization free energy of solvation -81.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds