Wall clock time and date at job start Tue Mar 31 2020 10:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.47201 * 109.47353 * 2 1 4 4 N 2.60804 * 109.47103 * 0.02562 * 2 1 3 5 5 C 1.53003 * 109.47236 * 119.99963 * 2 1 3 6 6 C 1.52999 * 109.46913 * 180.02562 * 5 2 1 7 7 C 1.53007 * 109.47255 * 300.00047 * 6 5 2 8 8 N 1.46904 * 109.46829 * 180.02562 * 7 6 5 9 9 C 1.46904 * 110.99623 * 155.00093 * 8 7 6 10 10 C 1.50699 * 109.46960 * 179.97438 * 9 8 7 11 11 C 1.38328 * 119.96230 * 269.97850 * 10 9 8 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99651 * 10 9 8 25 25 C 1.52993 * 109.46936 * 60.00393 * 7 6 5 26 26 C 1.52999 * 109.47242 * 240.00307 * 2 1 3 27 27 H 1.08994 * 109.46680 * 299.99751 * 1 2 3 28 28 H 1.08996 * 109.47029 * 60.00170 * 1 2 3 29 29 H 1.08997 * 109.46852 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47034 * 60.00315 * 5 2 1 31 31 H 1.08997 * 109.47012 * 300.00311 * 5 2 1 32 32 H 1.09005 * 109.46784 * 180.02562 * 6 5 2 33 33 H 1.09002 * 109.47420 * 60.00038 * 6 5 2 34 34 H 1.09002 * 109.46899 * 300.00309 * 7 6 5 35 35 H 1.00901 * 110.99335 * 278.95199 * 8 7 6 36 36 H 1.09002 * 109.46748 * 59.99768 * 9 8 7 37 37 H 1.08992 * 109.46853 * 299.99880 * 9 8 7 38 38 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 39 39 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 40 40 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 41 41 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 43 43 H 1.08997 * 109.47382 * 59.99738 * 25 7 6 44 44 H 1.09002 * 109.47135 * 180.02562 * 25 7 6 45 45 H 1.09002 * 109.46682 * 299.99948 * 26 2 1 46 46 H 1.08996 * 109.47497 * 59.99810 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0208 1.3878 0.0000 4 7 2.3994 2.4589 0.0011 5 6 2.0401 -0.7213 1.2493 6 6 3.5701 -0.7206 1.2495 7 6 4.0806 -1.4415 0.0002 8 7 5.5497 -1.4414 0.0008 9 6 6.0764 -2.5646 -0.7859 10 6 7.5829 -2.5313 -0.7628 11 6 8.2734 -1.8288 -1.7340 12 6 9.6557 -1.7963 -1.7164 13 6 10.3510 -2.4601 -0.7247 14 6 9.6609 -3.1708 0.2483 15 8 10.3417 -3.8293 1.2209 16 6 11.6857 -3.8547 1.1173 17 1 12.1776 -3.2973 0.3339 18 6 12.4364 -4.5965 2.0166 19 7 11.8373 -5.2759 2.9705 20 14 14.2986 -4.6323 1.8726 21 1 14.7224 -3.7919 0.7240 22 1 14.9019 -4.1028 3.1220 23 1 14.7517 -6.0301 1.6577 24 6 8.2724 -3.2022 0.2276 25 6 3.5706 -0.7202 -1.2489 26 6 2.0401 -0.7212 -1.2493 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6768 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9334 -1.2349 2.1393 33 1 3.9331 0.3072 1.2497 34 1 3.7176 -2.4693 0.0000 35 1 5.9112 -0.5621 -0.3371 36 1 5.7273 -2.4825 -1.8153 37 1 5.7268 -3.5038 -0.3575 38 1 7.7318 -1.3047 -2.5075 39 1 10.1920 -1.2474 -2.4763 40 1 11.4305 -2.4301 -0.7085 41 1 12.3625 -5.7951 3.5994 42 1 7.7327 -3.7510 0.9852 43 1 3.9335 0.3075 -1.2487 44 1 3.9339 -1.2340 -2.1390 45 1 1.6767 -1.7488 -1.2492 46 1 1.6768 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326430587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:47 Heat of formation + Delta-G solvation = 4.016243 kcal Electronic energy + Delta-G solvation = -25051.052249 eV Core-core repulsion = 21519.336827 eV Total energy + Delta-G solvation = -3531.715422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.20186 -39.02775 -37.16263 -36.23157 -35.04914 -32.36958 -32.07172 -31.23164 -29.90314 -28.87721 -26.35254 -25.32768 -24.18981 -23.11641 -22.67760 -21.63320 -20.90091 -20.52195 -17.74693 -17.16427 -16.79300 -15.72033 -15.30714 -15.27036 -14.96913 -14.86101 -14.62651 -14.30823 -14.00936 -13.99741 -13.54894 -13.40896 -13.15878 -13.01879 -12.85919 -12.75474 -12.46605 -12.39111 -12.31326 -11.98718 -11.85077 -11.76109 -11.57817 -11.44109 -11.26608 -11.02429 -10.84458 -10.76155 -10.64218 -10.53533 -10.46111 -10.34239 -9.30579 -8.82793 -8.35118 -8.03611 -7.21023 -6.42276 -4.01159 2.13887 2.39225 2.53198 2.55001 3.13727 3.15202 3.20727 3.51011 3.98509 4.07951 4.22970 4.38251 4.43673 4.64857 4.69776 4.81237 5.00843 5.06848 5.10228 5.12710 5.16293 5.18061 5.28188 5.34693 5.43926 5.45563 5.49288 5.59968 5.62456 5.69077 5.71939 5.77047 5.85880 5.89681 5.94962 6.04721 6.13418 6.20439 6.39219 6.68715 6.94726 7.08234 7.10985 7.30627 7.32793 7.37179 7.45697 7.49145 7.84839 8.02964 9.03604 9.74603 10.75964 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.002265 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.640647 B =12360.819974 C =12768.951289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 C 0.219 3.781 4 N -0.437 5.437 5 C -0.106 4.106 6 C -0.114 4.114 7 C 0.088 3.912 8 N -0.677 5.677 9 C 0.107 3.893 10 C -0.049 4.049 11 C -0.207 4.207 12 C -0.076 4.076 13 C -0.232 4.232 14 C 0.152 3.848 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.165 4.165 25 C -0.156 4.156 26 C -0.102 4.102 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.343 0.657 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.269 0.731 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.356 6.086 -7.729 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.031 3.969 3 C -0.100 4.100 4 N -0.112 5.112 5 C -0.145 4.145 6 C -0.152 4.152 7 C -0.022 4.022 8 N -0.307 5.307 9 C -0.021 4.021 10 C -0.050 4.050 11 C -0.227 4.227 12 C -0.095 4.095 13 C -0.252 4.252 14 C 0.098 3.902 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.185 4.185 25 C -0.196 4.196 26 C -0.141 4.141 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.161 0.839 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.079 0.921 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.716 7.102 -6.718 22.907 hybrid contribution 0.813 0.059 -1.082 1.355 sum -19.904 7.161 -7.800 22.545 Atomic orbital electron populations 1.21885 0.91484 1.03656 1.03011 1.18446 0.96290 0.83409 0.98736 1.29062 0.93113 0.94594 0.93196 1.81236 1.08932 1.12689 1.08325 1.21680 0.96452 1.01091 0.95316 1.21587 0.93521 1.01226 0.98878 1.21618 0.87968 0.99465 0.93153 1.60572 1.05624 1.06603 1.57867 1.20825 0.91508 0.94642 0.95109 1.19159 0.93480 0.97392 0.94927 1.20416 0.94082 1.06604 1.01587 1.20685 0.93901 0.97740 0.97123 1.21181 1.00591 1.04825 0.98593 1.19368 0.91682 0.91061 0.88075 1.83982 1.20652 1.63650 1.39941 1.21361 0.78351 1.30821 1.16161 0.89101 1.25277 1.00431 0.95542 0.95310 1.70047 1.36097 1.28356 1.15313 0.85660 0.80816 0.78427 0.78587 1.19149 1.20168 1.20164 1.20019 0.91215 1.06142 1.01157 1.22404 0.95604 1.01590 0.99977 1.21601 0.95876 1.01149 0.95484 0.91627 0.91767 0.90276 0.89514 0.90799 0.90077 0.92150 0.89943 0.83888 0.94854 0.90440 0.88166 0.87641 0.85693 0.92119 0.86495 0.91929 0.91161 0.89517 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 8.43 37.16 0.31 -0.23 16 2 C 0.03 0.21 0.72 -157.29 -0.11 0.09 16 3 C 0.22 2.09 11.36 -20.76 -0.24 1.85 16 4 N -0.44 -5.56 18.54 42.15 0.78 -4.77 16 5 C -0.11 -0.63 4.71 -26.73 -0.13 -0.75 16 6 C -0.11 -1.00 5.31 -26.73 -0.14 -1.15 16 7 C 0.09 0.80 2.47 -67.71 -0.17 0.64 16 8 N -0.68 -8.41 6.24 -107.99 -0.67 -9.08 16 9 C 0.11 1.44 5.61 -4.97 -0.03 1.41 16 10 C -0.05 -0.86 5.39 -104.65 -0.56 -1.42 16 11 C -0.21 -3.56 9.70 -39.53 -0.38 -3.95 16 12 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 13 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 14 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 15 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 16 C -0.39 -11.03 9.49 30.89 0.29 -10.73 16 17 H 0.09 2.39 5.21 -52.49 -0.27 2.11 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 20 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 C -0.17 -3.52 9.65 -39.39 -0.38 -3.90 16 25 C -0.16 -1.23 4.95 -26.71 -0.13 -1.36 16 26 C -0.10 -0.56 4.71 -26.70 -0.13 -0.69 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.64 7.23 -51.93 -0.38 0.27 16 34 H 0.08 0.70 7.80 -51.93 -0.40 0.29 16 35 H 0.34 4.38 8.46 -39.29 -0.33 4.05 16 36 H 0.03 0.39 7.38 -51.93 -0.38 0.01 16 37 H 0.08 1.02 8.00 -51.93 -0.42 0.60 16 38 H 0.10 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.13 2.77 5.64 -52.48 -0.30 2.48 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 43 H 0.06 0.60 7.21 -51.93 -0.37 0.22 16 44 H 0.07 0.55 7.45 -51.93 -0.39 0.17 16 45 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -32.40 374.90 -8.44 -40.84 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.03 Total: 4.66 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -2.91 Total: -23.09 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.87 Total: -38.59 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.40 -8.44 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326430587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.857 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds