Wall clock time and date at job start Tue Mar 31 2020 10:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.47201 * 109.47353 * 2 1 4 4 N 2.60804 * 109.47103 * 0.02562 * 2 1 3 5 5 C 1.53003 * 109.47236 * 119.99963 * 2 1 3 6 6 C 1.52999 * 109.46913 * 180.02562 * 5 2 1 7 7 C 1.53007 * 109.47255 * 300.00047 * 6 5 2 8 8 N 1.46904 * 109.46829 * 180.02562 * 7 6 5 9 9 C 1.46904 * 110.99623 * 155.00093 * 8 7 6 10 10 C 1.50699 * 109.46960 * 179.97438 * 9 8 7 11 11 C 1.38328 * 119.96230 * 269.97850 * 10 9 8 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99651 * 10 9 8 25 25 C 1.52993 * 109.46936 * 60.00393 * 7 6 5 26 26 C 1.52999 * 109.47242 * 240.00307 * 2 1 3 27 27 H 1.08994 * 109.46680 * 299.99751 * 1 2 3 28 28 H 1.08996 * 109.47029 * 60.00170 * 1 2 3 29 29 H 1.08997 * 109.46852 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47034 * 60.00315 * 5 2 1 31 31 H 1.08997 * 109.47012 * 300.00311 * 5 2 1 32 32 H 1.09005 * 109.46784 * 180.02562 * 6 5 2 33 33 H 1.09002 * 109.47420 * 60.00038 * 6 5 2 34 34 H 1.09002 * 109.46899 * 300.00309 * 7 6 5 35 35 H 1.00901 * 110.99335 * 278.95199 * 8 7 6 36 36 H 1.09002 * 109.46748 * 59.99768 * 9 8 7 37 37 H 1.08992 * 109.46853 * 299.99880 * 9 8 7 38 38 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 39 39 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 40 40 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 41 41 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 43 43 H 1.08997 * 109.47382 * 59.99738 * 25 7 6 44 44 H 1.09002 * 109.47135 * 180.02562 * 25 7 6 45 45 H 1.09002 * 109.46682 * 299.99948 * 26 2 1 46 46 H 1.08996 * 109.47497 * 59.99810 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0208 1.3878 0.0000 4 7 2.3994 2.4589 0.0011 5 6 2.0401 -0.7213 1.2493 6 6 3.5701 -0.7206 1.2495 7 6 4.0806 -1.4415 0.0002 8 7 5.5497 -1.4414 0.0008 9 6 6.0764 -2.5646 -0.7859 10 6 7.5829 -2.5313 -0.7628 11 6 8.2734 -1.8288 -1.7340 12 6 9.6557 -1.7963 -1.7164 13 6 10.3510 -2.4601 -0.7247 14 6 9.6609 -3.1708 0.2483 15 8 10.3417 -3.8293 1.2209 16 6 11.6857 -3.8547 1.1173 17 1 12.1776 -3.2973 0.3339 18 6 12.4364 -4.5965 2.0166 19 7 11.8373 -5.2759 2.9705 20 14 14.2986 -4.6323 1.8726 21 1 14.7224 -3.7919 0.7240 22 1 14.9019 -4.1028 3.1220 23 1 14.7517 -6.0301 1.6577 24 6 8.2724 -3.2022 0.2276 25 6 3.5706 -0.7202 -1.2489 26 6 2.0401 -0.7212 -1.2493 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6768 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9334 -1.2349 2.1393 33 1 3.9331 0.3072 1.2497 34 1 3.7176 -2.4693 0.0000 35 1 5.9112 -0.5621 -0.3371 36 1 5.7273 -2.4825 -1.8153 37 1 5.7268 -3.5038 -0.3575 38 1 7.7318 -1.3047 -2.5075 39 1 10.1920 -1.2474 -2.4763 40 1 11.4305 -2.4301 -0.7085 41 1 12.3625 -5.7951 3.5994 42 1 7.7327 -3.7510 0.9852 43 1 3.9335 0.3075 -1.2487 44 1 3.9339 -1.2340 -2.1390 45 1 1.6767 -1.7488 -1.2492 46 1 1.6768 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326430587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:47 Heat of formation + Delta-G solvation = -16.242184 kcal Electronic energy + Delta-G solvation = -25051.930720 eV Core-core repulsion = 21519.336827 eV Total energy + Delta-G solvation = -3532.593893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93562 -40.62796 -38.61064 -37.34079 -35.95177 -34.29684 -33.16551 -31.79932 -31.19626 -30.37761 -27.52610 -26.90146 -25.20151 -23.69223 -23.34911 -23.22030 -22.21980 -21.53596 -19.51306 -18.77735 -17.74331 -16.76912 -16.48086 -16.43870 -16.10396 -15.87215 -15.83782 -15.65145 -15.40742 -14.86751 -14.78297 -14.56801 -14.26849 -13.99867 -13.91559 -13.67754 -13.61715 -13.42132 -13.09397 -13.02981 -12.96405 -12.78722 -12.50208 -12.45396 -12.33806 -12.22881 -12.14208 -12.08305 -11.97357 -11.62612 -11.26595 -11.14743 -11.06604 -10.80999 -9.66712 -9.22623 -8.96108 -8.46514 -6.14790 0.54702 0.75537 1.34502 1.43035 1.52876 1.80498 1.83268 2.17715 2.79117 2.93397 3.11840 3.39388 3.52088 3.72824 3.82282 3.96134 4.01022 4.08301 4.13623 4.23367 4.34818 4.43702 4.49084 4.54652 4.56748 4.60545 4.69594 4.77521 4.82834 4.89423 4.95507 4.97700 5.05735 5.12089 5.14255 5.17276 5.23843 5.26796 5.32867 5.39465 5.41495 5.44848 5.68195 5.74766 5.79101 6.03960 6.17238 6.28506 6.47252 6.62227 6.98307 7.80362 8.77150 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.002265 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.640647 B =12360.819974 C =12768.951289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.037 3.963 3 C 0.240 3.760 4 N -0.503 5.503 5 C -0.101 4.101 6 C -0.113 4.113 7 C 0.090 3.910 8 N -0.695 5.695 9 C 0.114 3.886 10 C -0.038 4.038 11 C -0.185 4.185 12 C -0.074 4.074 13 C -0.247 4.247 14 C 0.111 3.889 15 O -0.234 6.234 16 C -0.412 4.412 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.252 1.252 22 H -0.269 1.269 23 H -0.267 1.267 24 C -0.181 4.181 25 C -0.151 4.151 26 C -0.098 4.098 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.098 0.902 35 H 0.339 0.661 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.499 6.286 -10.449 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.033 3.967 3 C -0.077 4.077 4 N -0.178 5.178 5 C -0.140 4.140 6 C -0.152 4.152 7 C -0.019 4.019 8 N -0.325 5.325 9 C -0.014 4.014 10 C -0.039 4.039 11 C -0.204 4.204 12 C -0.092 4.092 13 C -0.266 4.266 14 C 0.061 3.939 15 O -0.141 6.141 16 C -0.489 4.489 17 H 0.117 0.883 18 C -0.222 4.222 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.176 1.176 22 H -0.194 1.194 23 H -0.192 1.192 24 C -0.201 4.201 25 C -0.190 4.190 26 C -0.137 4.137 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.157 0.843 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.135 0.865 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.906 7.335 -9.479 25.853 hybrid contribution 1.219 0.141 -0.402 1.291 sum -21.688 7.476 -9.881 24.978 Atomic orbital electron populations 1.21919 0.89252 1.05475 1.03117 1.18747 0.97858 0.81015 0.99078 1.29911 0.91412 0.95105 0.91262 1.81244 1.11160 1.14951 1.10495 1.21697 0.93931 1.02870 0.95481 1.21565 0.95885 0.99349 0.98382 1.21696 0.85835 1.00539 0.93827 1.60524 1.07983 1.05999 1.58012 1.20793 0.88286 0.95282 0.97047 1.19655 0.96046 0.95108 0.93065 1.20979 0.93736 1.04356 1.01339 1.21112 0.94850 0.96705 0.96523 1.21287 1.00428 1.05560 0.99356 1.19945 0.92974 0.92214 0.88813 1.83942 1.21076 1.66401 1.42634 1.21841 0.78855 1.31374 1.16787 0.88286 1.26589 1.06114 0.94824 0.94626 1.70190 1.38419 1.30376 1.16961 0.84528 0.73525 0.78969 0.79153 1.17587 1.19374 1.19186 1.20229 0.90272 1.07205 1.02388 1.22324 0.97463 0.99982 0.99275 1.21658 0.93890 1.02875 0.95294 0.91795 0.91551 0.87565 0.86558 0.90597 0.91486 0.94790 0.88344 0.84324 0.91911 0.90140 0.83816 0.83993 0.86683 0.91857 0.87549 0.94215 0.90456 0.86510 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 8.43 71.98 0.61 0.05 16 2 C 0.04 0.33 0.72 -53.98 -0.04 0.29 16 3 C 0.24 4.36 11.36 89.44 1.02 5.38 16 4 N -0.50 -12.94 18.54 20.01 0.37 -12.57 16 5 C -0.10 -0.91 4.71 30.59 0.14 -0.77 16 6 C -0.11 -1.87 5.31 30.60 0.16 -1.71 16 7 C 0.09 1.42 2.47 44.91 0.11 1.53 16 8 N -0.70 -15.99 6.24 -495.56 -3.09 -19.08 16 9 C 0.11 2.72 5.61 85.56 0.48 3.20 16 10 C -0.04 -1.27 5.39 -19.88 -0.11 -1.37 16 11 C -0.19 -5.70 9.70 22.30 0.22 -5.48 16 12 C -0.07 -2.57 10.04 22.25 0.22 -2.35 16 13 C -0.25 -11.06 9.17 22.39 0.21 -10.85 16 14 C 0.11 5.66 6.65 22.58 0.15 5.81 16 15 O -0.23 -14.44 9.76 -22.74 -0.22 -14.66 16 16 C -0.41 -24.59 9.49 67.92 0.64 -23.94 16 17 H 0.10 5.45 5.21 -2.91 -0.02 5.44 16 18 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 19 N -0.92 -57.47 13.67 21.61 0.30 -57.17 16 20 Si 1.02 43.69 29.55 68.60 2.03 45.72 16 21 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 C -0.18 -7.91 9.65 22.39 0.22 -7.69 16 25 C -0.15 -1.92 4.95 30.61 0.15 -1.77 16 26 C -0.10 -0.69 4.71 30.61 0.14 -0.54 16 27 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.03 0.73 7.23 -2.39 -0.02 0.71 16 34 H 0.10 1.27 7.80 -2.39 -0.02 1.26 16 35 H 0.34 8.12 8.46 -89.69 -0.76 7.36 16 36 H 0.06 1.17 7.38 -2.39 -0.02 1.15 16 37 H 0.08 1.91 8.00 -2.39 -0.02 1.89 16 38 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 40 H 0.12 5.27 5.64 -2.91 -0.02 5.26 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.04 0.70 7.21 -2.39 -0.02 0.68 16 44 H 0.08 0.89 7.45 -2.39 -0.02 0.87 16 45 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -78.53 374.90 4.40 -74.13 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.23 Total: 24.80 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 4.79 Total: -41.16 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -2.43 Total: -88.82 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.22 Total: -14.66 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -78.53 4.40 -74.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326430587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.892 kcal (2) G-P(sol) polarization free energy of solvation -78.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds