Wall clock time and date at job start Tue Mar 31 2020 10:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38084 * 120.00083 * 2 1 4 4 C 1.38863 * 119.99966 * 180.27479 * 3 2 1 5 5 N 1.39891 * 120.00686 * 179.76476 * 4 3 2 6 6 C 1.46502 * 119.99902 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46706 * 180.72464 * 6 5 4 8 8 C 1.50708 * 115.55200 * 65.12473 * 7 6 5 9 9 H 1.07996 * 119.99818 * 265.35643 * 8 7 6 10 10 C 1.37876 * 119.99943 * 85.35485 * 8 7 6 11 11 N 1.31509 * 120.00524 * 353.38848 * 10 8 7 12 12 Si 1.86801 * 119.99693 * 173.38835 * 10 8 7 13 13 H 1.48497 * 109.47013 * 59.99974 * 12 10 8 14 14 H 1.48502 * 109.47020 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47293 * 300.00188 * 12 10 8 16 16 C 1.52998 * 117.49931 * 279.44955 * 7 6 5 17 17 C 1.53006 * 117.49689 * 210.78812 * 7 6 5 18 18 C 1.38910 * 119.98962 * 359.73666 * 4 3 2 19 19 C 1.38047 * 119.99637 * 0.02562 * 18 4 3 20 20 C 1.38830 * 119.99938 * 179.75441 * 2 1 3 21 21 N 1.40151 * 119.99590 * 0.02562 * 20 2 1 22 22 C 1.46759 * 124.35095 * 269.72108 * 21 20 2 23 23 C 1.54477 * 105.47301 * 197.01448 * 22 21 20 24 24 C 1.54629 * 101.76926 * 334.58360 * 23 22 21 25 25 C 1.34424 * 124.34746 * 89.72080 * 21 20 2 26 26 O 1.21291 * 124.94450 * 359.62533 * 25 21 20 27 27 H 1.08999 * 109.47496 * 270.24059 * 1 2 3 28 28 H 1.09003 * 109.47365 * 30.24365 * 1 2 3 29 29 H 1.09008 * 109.47005 * 150.23440 * 1 2 3 30 30 H 1.08004 * 119.99936 * 359.97438 * 3 2 1 31 31 H 0.96998 * 119.99928 * 359.97438 * 5 4 3 32 32 H 1.08997 * 109.46538 * 300.71967 * 6 5 4 33 33 H 1.08993 * 109.47535 * 60.72355 * 6 5 4 34 34 H 0.97001 * 120.00280 * 185.05958 * 11 10 8 35 35 H 1.08996 * 117.49624 * 0.02562 * 16 7 6 36 36 H 1.09003 * 117.50030 * 145.02421 * 16 7 6 37 37 H 1.08996 * 117.49861 * 214.98270 * 17 7 6 38 38 H 1.08998 * 117.49341 * 359.97438 * 17 7 6 39 39 H 1.08004 * 120.00179 * 179.97438 * 18 4 3 40 40 H 1.07992 * 119.99577 * 180.02562 * 19 18 4 41 41 H 1.09000 * 110.24497 * 78.01524 * 22 21 20 42 42 H 1.08998 * 110.24643 * 316.01602 * 22 21 20 43 43 H 1.09002 * 110.97302 * 92.70546 * 23 22 21 44 44 H 1.09005 * 110.97076 * 216.46481 * 23 22 21 45 45 H 1.08996 * 110.48989 * 143.47553 * 24 23 22 46 46 H 1.09002 * 110.48967 * 265.99287 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1958 0.0000 4 6 3.5860 1.1958 -0.0058 5 7 4.2856 2.4072 -0.0107 6 6 5.7506 2.4070 -0.0163 7 6 6.2608 3.8494 -0.0027 8 6 5.9430 4.6396 1.2406 9 1 5.0660 5.2691 1.2708 10 6 6.7719 4.5590 2.3394 11 7 7.7649 3.6968 2.3522 12 14 6.4846 5.6745 3.8099 13 1 5.1296 5.4245 4.3636 14 1 7.5051 5.3933 4.8514 15 1 6.5910 7.0930 3.3835 16 6 6.2813 4.6040 -1.3335 17 6 7.5930 4.1341 -0.6994 18 6 4.2803 -0.0073 -0.0060 19 6 3.5898 -1.2027 -0.0010 20 6 2.2011 -1.2023 0.0052 21 7 1.5002 -2.4160 0.0098 22 6 1.0908 -3.1311 1.2242 23 6 0.7622 -4.5689 0.7647 24 6 0.3936 -4.3489 -0.7207 25 6 1.1167 -3.0746 -1.0975 26 8 1.3212 -2.7018 -2.2334 27 1 -0.3634 0.0043 1.0276 28 1 -0.3634 0.8878 -0.5176 29 1 -0.3633 -0.8921 -0.5102 30 1 1.6574 2.1312 -0.0004 31 1 3.8007 3.2473 -0.0105 32 1 6.1171 1.8837 0.8668 33 1 6.1106 1.9027 -0.9130 34 1 8.3026 3.5881 3.1522 35 1 5.9309 4.0730 -2.2185 36 1 6.0652 5.6721 -1.3098 37 1 8.2392 4.8932 -0.2588 38 1 8.1060 3.2937 -1.1670 39 1 5.3604 -0.0076 -0.0109 40 1 4.1296 -2.1380 -0.0008 41 1 0.2074 -2.6626 1.6580 42 1 1.9059 -3.1433 1.9477 43 1 1.6335 -5.2172 0.8585 44 1 -0.0839 -4.9725 1.3210 45 1 0.7464 -5.1818 -1.3288 46 1 -0.6837 -4.2257 -0.8323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327385601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:13 Heat of formation + Delta-G solvation = 16.375390 kcal Electronic energy + Delta-G solvation = -25735.610389 eV Core-core repulsion = 22204.430900 eV Total energy + Delta-G solvation = -3531.179489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76416 -38.86460 -37.05491 -36.35075 -34.62702 -32.23477 -32.05583 -31.81867 -28.60049 -27.69253 -26.50486 -25.78304 -24.79060 -22.53889 -21.99556 -21.22157 -20.82502 -19.41732 -19.13409 -17.30290 -16.95063 -16.46118 -16.03255 -15.50020 -15.02066 -14.71154 -14.37968 -14.08074 -13.94060 -13.70993 -13.62214 -13.38181 -13.15880 -13.02229 -12.85108 -12.72915 -12.54073 -12.29356 -11.74903 -11.73059 -11.58964 -11.40069 -11.27501 -11.04365 -10.97986 -10.74640 -10.57922 -10.29891 -9.94438 -9.61765 -9.40404 -8.88895 -8.80503 -8.53290 -8.42488 -8.25053 -6.77586 -6.12535 -4.20413 1.74559 1.83423 2.57167 3.05711 3.24300 3.29811 3.32048 4.05059 4.11167 4.24835 4.32708 4.36797 4.57146 4.86141 5.09469 5.12759 5.16165 5.26322 5.27810 5.32352 5.44262 5.50027 5.53131 5.65611 5.69374 5.71120 5.81314 5.91922 6.00394 6.04850 6.25011 6.29996 6.35960 6.44368 6.51241 6.66126 6.76721 6.77821 6.86401 6.91698 7.02677 7.10093 7.30557 7.35397 7.43284 7.77265 8.01025 8.27490 8.30315 8.45567 8.80018 9.46344 10.95359 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020197 B = 0.002937 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.017123 B = 9529.686269 C = 9934.799320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.026 4.026 3 C -0.204 4.204 4 C 0.246 3.754 5 N -0.715 5.715 6 C 0.164 3.836 7 C 0.030 3.970 8 C -0.499 4.499 9 H 0.059 0.941 10 C 0.075 3.925 11 N -0.877 5.877 12 Si 0.890 3.110 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.210 4.210 17 C -0.149 4.149 18 C -0.201 4.201 19 C -0.053 4.053 20 C 0.048 3.952 21 N -0.560 5.560 22 C 0.102 3.898 23 C -0.132 4.132 24 C -0.155 4.155 25 C 0.513 3.487 26 O -0.526 6.526 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.401 0.599 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.409 -14.305 -1.152 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.028 4.028 3 C -0.228 4.228 4 C 0.137 3.863 5 N -0.338 5.338 6 C 0.040 3.960 7 C 0.029 3.971 8 C -0.537 4.537 9 H 0.077 0.923 10 C -0.129 4.129 11 N -0.513 5.513 12 Si 0.718 3.282 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.248 4.248 17 C -0.187 4.187 18 C -0.225 4.225 19 C -0.073 4.073 20 C -0.043 4.043 21 N -0.290 5.290 22 C -0.021 4.021 23 C -0.169 4.169 24 C -0.195 4.195 25 C 0.301 3.699 26 O -0.401 6.401 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.803 -14.049 -1.658 19.080 hybrid contribution -0.094 0.893 1.006 1.349 sum -12.897 -13.156 -0.652 18.435 Atomic orbital electron populations 1.20676 0.91729 1.02307 1.01717 1.19602 0.95328 0.91763 0.96142 1.20269 0.92075 0.97333 1.13134 1.18023 0.90873 0.87129 0.90293 1.45032 1.06787 1.04416 1.77534 1.21029 0.77800 0.98309 0.98823 1.18972 0.96765 0.90772 0.90559 1.20307 1.09670 1.26737 0.96974 0.92326 1.24959 0.94457 0.95182 0.98321 1.69951 1.18970 1.34001 1.28355 0.86691 0.77954 0.81367 0.82196 1.20216 1.21238 1.20203 1.23022 1.04347 0.99867 0.97540 1.22498 0.90873 1.01787 1.03513 1.20520 0.99915 0.90551 1.11504 1.20856 0.92585 0.97545 0.96281 1.16750 0.89750 0.83211 1.14612 1.45364 1.55674 1.21113 1.06896 1.22145 1.00781 0.91458 0.87668 1.22605 1.02911 0.96294 0.95127 1.22313 1.02173 0.97241 0.97781 1.21008 0.78665 0.85679 0.84516 1.90737 1.56832 1.71632 1.20948 0.91417 0.91623 0.92243 0.86126 0.76398 0.91395 0.95190 0.92808 0.91588 0.90398 0.89840 0.91717 0.85675 0.86676 0.91084 0.90166 0.89956 0.89206 0.88185 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.76 36.00 0.35 -0.96 16 2 C -0.03 -0.40 5.89 -104.46 -0.62 -1.01 16 3 C -0.20 -3.31 9.54 -39.41 -0.38 -3.68 16 4 C 0.25 4.42 6.66 -83.70 -0.56 3.86 16 5 N -0.72 -13.74 5.65 -58.59 -0.33 -14.07 16 6 C 0.16 3.50 4.74 -4.04 -0.02 3.48 16 7 C 0.03 0.69 1.37 -155.65 -0.21 0.48 16 8 C -0.50 -12.80 8.66 -34.44 -0.30 -13.10 16 9 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 10 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 11 N -0.88 -23.80 12.92 55.43 0.72 -23.08 16 12 Si 0.89 20.48 29.55 -169.99 -5.02 15.45 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 17 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 18 C -0.20 -3.50 9.31 -39.40 -0.37 -3.87 16 19 C -0.05 -0.84 9.96 -39.42 -0.39 -1.23 16 20 C 0.05 0.74 5.36 -83.60 -0.45 0.29 16 21 N -0.56 -7.05 2.06 -112.21 -0.23 -7.28 16 22 C 0.10 0.85 7.28 -3.13 -0.02 0.83 16 23 C -0.13 -0.76 7.18 -25.10 -0.18 -0.94 16 24 C -0.15 -1.23 6.86 -26.74 -0.18 -1.41 16 25 C 0.51 6.89 7.38 -10.86 -0.08 6.81 16 26 O -0.53 -9.59 17.71 5.55 0.10 -9.49 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 29 H 0.06 0.73 6.94 -51.92 -0.36 0.37 16 30 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.40 7.56 8.41 -40.82 -0.34 7.21 16 32 H 0.07 1.61 7.91 -51.93 -0.41 1.20 16 33 H 0.03 0.61 7.93 -51.93 -0.41 0.20 16 34 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.13 2.18 6.73 -52.48 -0.35 1.83 16 40 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -30.31 381.76 -10.37 -40.68 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.34 Total: 8.88 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -4.02 Total: -16.84 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.15 Total: -44.44 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.10 Total: -9.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.31 -10.37 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327385601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.056 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds