Wall clock time and date at job start Tue Mar 31 2020 10:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38084 * 120.00083 * 2 1 4 4 C 1.38863 * 119.99966 * 180.27479 * 3 2 1 5 5 N 1.39891 * 120.00686 * 179.76476 * 4 3 2 6 6 C 1.46502 * 119.99902 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46706 * 180.72464 * 6 5 4 8 8 C 1.50708 * 115.55200 * 65.12473 * 7 6 5 9 9 H 1.07996 * 119.99818 * 265.35643 * 8 7 6 10 10 C 1.37876 * 119.99943 * 85.35485 * 8 7 6 11 11 N 1.31509 * 120.00524 * 353.38848 * 10 8 7 12 12 Si 1.86801 * 119.99693 * 173.38835 * 10 8 7 13 13 H 1.48497 * 109.47013 * 59.99974 * 12 10 8 14 14 H 1.48502 * 109.47020 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47293 * 300.00188 * 12 10 8 16 16 C 1.52998 * 117.49931 * 279.44955 * 7 6 5 17 17 C 1.53006 * 117.49689 * 210.78812 * 7 6 5 18 18 C 1.38910 * 119.98962 * 359.73666 * 4 3 2 19 19 C 1.38047 * 119.99637 * 0.02562 * 18 4 3 20 20 C 1.38830 * 119.99938 * 179.75441 * 2 1 3 21 21 N 1.40151 * 119.99590 * 0.02562 * 20 2 1 22 22 C 1.46759 * 124.35095 * 269.72108 * 21 20 2 23 23 C 1.54477 * 105.47301 * 197.01448 * 22 21 20 24 24 C 1.54629 * 101.76926 * 334.58360 * 23 22 21 25 25 C 1.34424 * 124.34746 * 89.72080 * 21 20 2 26 26 O 1.21291 * 124.94450 * 359.62533 * 25 21 20 27 27 H 1.08999 * 109.47496 * 270.24059 * 1 2 3 28 28 H 1.09003 * 109.47365 * 30.24365 * 1 2 3 29 29 H 1.09008 * 109.47005 * 150.23440 * 1 2 3 30 30 H 1.08004 * 119.99936 * 359.97438 * 3 2 1 31 31 H 0.96998 * 119.99928 * 359.97438 * 5 4 3 32 32 H 1.08997 * 109.46538 * 300.71967 * 6 5 4 33 33 H 1.08993 * 109.47535 * 60.72355 * 6 5 4 34 34 H 0.97001 * 120.00280 * 185.05958 * 11 10 8 35 35 H 1.08996 * 117.49624 * 0.02562 * 16 7 6 36 36 H 1.09003 * 117.50030 * 145.02421 * 16 7 6 37 37 H 1.08996 * 117.49861 * 214.98270 * 17 7 6 38 38 H 1.08998 * 117.49341 * 359.97438 * 17 7 6 39 39 H 1.08004 * 120.00179 * 179.97438 * 18 4 3 40 40 H 1.07992 * 119.99577 * 180.02562 * 19 18 4 41 41 H 1.09000 * 110.24497 * 78.01524 * 22 21 20 42 42 H 1.08998 * 110.24643 * 316.01602 * 22 21 20 43 43 H 1.09002 * 110.97302 * 92.70546 * 23 22 21 44 44 H 1.09005 * 110.97076 * 216.46481 * 23 22 21 45 45 H 1.08996 * 110.48989 * 143.47553 * 24 23 22 46 46 H 1.09002 * 110.48967 * 265.99287 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1958 0.0000 4 6 3.5860 1.1958 -0.0058 5 7 4.2856 2.4072 -0.0107 6 6 5.7506 2.4070 -0.0163 7 6 6.2608 3.8494 -0.0027 8 6 5.9430 4.6396 1.2406 9 1 5.0660 5.2691 1.2708 10 6 6.7719 4.5590 2.3394 11 7 7.7649 3.6968 2.3522 12 14 6.4846 5.6745 3.8099 13 1 5.1296 5.4245 4.3636 14 1 7.5051 5.3933 4.8514 15 1 6.5910 7.0930 3.3835 16 6 6.2813 4.6040 -1.3335 17 6 7.5930 4.1341 -0.6994 18 6 4.2803 -0.0073 -0.0060 19 6 3.5898 -1.2027 -0.0010 20 6 2.2011 -1.2023 0.0052 21 7 1.5002 -2.4160 0.0098 22 6 1.0908 -3.1311 1.2242 23 6 0.7622 -4.5689 0.7647 24 6 0.3936 -4.3489 -0.7207 25 6 1.1167 -3.0746 -1.0975 26 8 1.3212 -2.7018 -2.2334 27 1 -0.3634 0.0043 1.0276 28 1 -0.3634 0.8878 -0.5176 29 1 -0.3633 -0.8921 -0.5102 30 1 1.6574 2.1312 -0.0004 31 1 3.8007 3.2473 -0.0105 32 1 6.1171 1.8837 0.8668 33 1 6.1106 1.9027 -0.9130 34 1 8.3026 3.5881 3.1522 35 1 5.9309 4.0730 -2.2185 36 1 6.0652 5.6721 -1.3098 37 1 8.2392 4.8932 -0.2588 38 1 8.1060 3.2937 -1.1670 39 1 5.3604 -0.0076 -0.0109 40 1 4.1296 -2.1380 -0.0008 41 1 0.2074 -2.6626 1.6580 42 1 1.9059 -3.1433 1.9477 43 1 1.6335 -5.2172 0.8585 44 1 -0.0839 -4.9725 1.3210 45 1 0.7464 -5.1818 -1.3288 46 1 -0.6837 -4.2257 -0.8323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327385601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:13 Heat of formation + Delta-G solvation = 1.084345 kcal Electronic energy + Delta-G solvation = -25736.273459 eV Core-core repulsion = 22204.430900 eV Total energy + Delta-G solvation = -3531.842559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76706 -40.13449 -38.70463 -37.42980 -35.95263 -34.01323 -33.34649 -32.94461 -29.88213 -28.42765 -27.79393 -27.50250 -26.40647 -23.73347 -22.93872 -22.71415 -22.04470 -21.07696 -20.38435 -18.46123 -18.27166 -17.65802 -17.51778 -16.72815 -16.61033 -16.10030 -15.70620 -15.47703 -15.21586 -14.88392 -14.68827 -14.62728 -14.45436 -14.14706 -14.02856 -13.86603 -13.71875 -13.42914 -13.23843 -13.04814 -12.90054 -12.78079 -12.64944 -12.39393 -12.29977 -12.11784 -12.03795 -11.76438 -11.43735 -11.15910 -10.86296 -10.56091 -10.45938 -10.05796 -9.79903 -9.67573 -8.20259 -8.11205 -6.24196 0.46316 0.55319 1.40747 1.42359 1.48582 1.57718 2.11800 2.40110 2.62831 2.81627 3.16167 3.51459 3.54236 3.74102 3.90871 3.94817 4.09737 4.21671 4.25485 4.34450 4.44396 4.53336 4.55874 4.61991 4.65817 4.70741 4.74913 4.76639 4.80887 4.90203 4.91074 4.96031 4.98135 5.13108 5.13679 5.23091 5.25000 5.30915 5.43945 5.58245 5.59294 5.65881 5.69479 5.75240 6.06084 6.22430 6.34477 6.54090 6.80424 6.99991 7.25326 7.44507 8.95146 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020197 B = 0.002937 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.017123 B = 9529.686269 C = 9934.799320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.034 4.034 3 C -0.205 4.205 4 C 0.224 3.776 5 N -0.721 5.721 6 C 0.185 3.815 7 C 0.009 3.991 8 C -0.508 4.508 9 H 0.055 0.945 10 C 0.029 3.971 11 N -0.904 5.904 12 Si 0.947 3.053 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.273 1.273 16 C -0.184 4.184 17 C -0.156 4.156 18 C -0.216 4.216 19 C -0.061 4.061 20 C 0.049 3.951 21 N -0.563 5.563 22 C 0.093 3.907 23 C -0.116 4.116 24 C -0.144 4.144 25 C 0.500 3.500 26 O -0.587 6.587 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.135 0.865 31 H 0.402 0.598 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.110 0.890 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 -15.647 -0.462 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.036 4.036 3 C -0.228 4.228 4 C 0.117 3.883 5 N -0.346 5.346 6 C 0.060 3.940 7 C 0.009 3.991 8 C -0.545 4.545 9 H 0.073 0.927 10 C -0.172 4.172 11 N -0.542 5.542 12 Si 0.773 3.227 13 H -0.198 1.198 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.221 4.221 17 C -0.195 4.195 18 C -0.239 4.239 19 C -0.081 4.081 20 C -0.043 4.043 21 N -0.292 5.292 22 C -0.028 4.028 23 C -0.153 4.153 24 C -0.184 4.184 25 C 0.290 3.710 26 O -0.467 6.467 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.237 0.763 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.143 0.857 45 H 0.128 0.872 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.429 -15.422 -0.934 21.834 hybrid contribution 0.643 1.229 0.782 1.593 sum -14.786 -14.192 -0.152 20.495 Atomic orbital electron populations 1.20697 0.89306 1.02661 1.03196 1.19998 0.97166 0.91289 0.95178 1.20481 0.91403 0.98508 1.12440 1.18209 0.91706 0.86666 0.91700 1.44808 1.05700 1.04930 1.79113 1.20589 0.79198 0.96791 0.97424 1.19040 0.97479 0.91682 0.90947 1.20587 1.09320 1.26592 0.98040 0.92679 1.25615 0.94484 0.96302 1.00756 1.70061 1.19875 1.35404 1.28826 0.85797 0.77748 0.79760 0.79405 1.19847 1.21288 1.19858 1.22990 1.02233 0.99929 0.96978 1.22433 0.91043 1.01807 1.04178 1.20564 0.99649 0.91280 1.12429 1.21023 0.93324 0.97452 0.96322 1.16994 0.89826 0.84844 1.12670 1.45637 1.54787 1.20248 1.08569 1.22479 1.01475 0.92819 0.86030 1.22652 1.04570 0.94572 0.93519 1.22361 1.02612 0.94159 0.99284 1.22041 0.78164 0.87105 0.83648 1.90698 1.59298 1.73385 1.23290 0.89202 0.90772 0.92372 0.84729 0.76347 0.94715 0.94767 0.93103 0.89571 0.90130 0.91932 0.90757 0.86697 0.85589 0.89376 0.90012 0.89277 0.85741 0.87196 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 9.76 71.23 0.70 -1.56 16 2 C -0.03 -1.00 5.89 -19.76 -0.12 -1.12 16 3 C -0.20 -6.54 9.54 22.38 0.21 -6.33 16 4 C 0.22 8.19 6.66 38.17 0.25 8.45 16 5 N -0.72 -28.26 5.65 -339.27 -1.92 -30.17 16 6 C 0.18 8.11 4.74 86.38 0.41 8.52 16 7 C 0.01 0.43 1.37 -52.92 -0.07 0.36 16 8 C -0.51 -26.34 8.66 25.60 0.22 -26.11 16 9 H 0.06 2.83 7.82 -2.91 -0.02 2.80 16 10 C 0.03 1.56 5.39 84.66 0.46 2.02 16 11 N -0.90 -50.28 12.92 21.45 0.28 -50.00 16 12 Si 0.95 42.39 29.55 68.60 2.03 44.41 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 C -0.18 -7.56 9.96 30.62 0.30 -7.25 16 17 C -0.16 -7.12 9.42 30.62 0.29 -6.83 16 18 C -0.22 -7.77 9.31 22.39 0.21 -7.56 16 19 C -0.06 -1.97 9.96 22.38 0.22 -1.75 16 20 C 0.05 1.45 5.36 38.10 0.20 1.66 16 21 N -0.56 -13.24 2.06 -627.52 -1.29 -14.53 16 22 C 0.09 1.26 7.28 86.83 0.63 1.89 16 23 C -0.12 -0.85 7.18 31.65 0.23 -0.62 16 24 C -0.14 -1.82 6.86 30.59 0.21 -1.61 16 25 C 0.50 12.74 7.38 87.90 0.65 13.38 16 26 O -0.59 -21.49 17.71 -3.06 -0.05 -21.54 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 29 H 0.06 1.31 6.94 -2.38 -0.02 1.29 16 30 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.40 15.30 8.41 -92.71 -0.78 14.52 16 32 H 0.03 1.73 7.91 -2.39 -0.02 1.72 16 33 H 0.03 1.44 7.93 -2.39 -0.02 1.42 16 34 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 35 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.12 4.27 6.73 -2.91 -0.02 4.25 16 40 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.12 0.16 8.14 -2.38 -0.02 0.14 16 45 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -67.90 381.76 4.24 -63.66 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.19 Total: 32.65 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 5.01 Total: -24.48 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -2.93 Total: -94.70 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -67.90 4.24 -63.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327385601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.740 kcal (2) G-P(sol) polarization free energy of solvation -67.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds