Wall clock time and date at job start Tue Mar 31 2020 11:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34239 * 126.50342 * 2 1 4 4 N 1.36835 * 109.93059 * 179.71006 * 3 2 1 5 5 C 1.46502 * 125.06342 * 180.27069 * 4 3 2 6 6 C 1.50702 * 109.46833 * 264.97326 * 5 4 3 7 7 O 1.21283 * 119.99820 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00291 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00459 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47391 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47044 * 300.00089 * 10 9 8 12 12 C 1.53005 * 109.46913 * 59.99829 * 10 9 8 13 13 C 1.50702 * 109.47223 * 179.97438 * 10 9 8 14 14 H 1.08001 * 119.99907 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99738 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00281 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99381 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47660 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46832 * 120.00474 * 17 15 13 20 20 H 1.48501 * 109.47012 * 239.99797 * 17 15 13 21 21 C 1.37688 * 109.87251 * 0.26493 * 4 3 2 22 22 C 1.39125 * 133.50694 * 180.02562 * 21 4 3 23 23 C 1.37748 * 119.78247 * 179.97438 * 22 21 4 24 24 C 1.38837 * 120.66139 * 0.02562 * 23 22 21 25 25 C 1.36626 * 120.53059 * 0.02562 * 24 23 22 26 26 C 1.39630 * 119.76271 * 359.95930 * 25 24 23 27 27 H 1.09006 * 109.46635 * 90.02116 * 1 2 3 28 28 H 1.08997 * 109.47269 * 210.01974 * 1 2 3 29 29 H 1.08998 * 109.46850 * 330.02438 * 1 2 3 30 30 H 1.08002 * 125.03689 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.47138 * 24.97145 * 5 4 3 32 32 H 1.08998 * 109.47142 * 144.97685 * 5 4 3 33 33 H 0.97003 * 120.00193 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47002 * 300.00075 * 9 8 6 35 35 H 1.09003 * 109.46603 * 60.00053 * 9 8 6 36 36 H 1.09002 * 109.47116 * 59.99592 * 11 10 9 37 37 H 1.09002 * 109.47307 * 179.97438 * 11 10 9 38 38 H 1.09003 * 109.47289 * 300.00280 * 11 10 9 39 39 H 1.09000 * 109.46810 * 60.00545 * 12 10 9 40 40 H 1.09002 * 109.46600 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.47487 * 299.99990 * 12 10 9 42 42 H 0.96995 * 119.99890 * 180.02562 * 16 15 13 43 43 H 1.08008 * 120.11037 * 359.97438 * 22 21 4 44 44 H 1.07992 * 119.66845 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.73163 * 179.97438 * 24 23 22 46 46 H 1.07998 * 120.11907 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6887 0.0065 5 6 4.7657 1.5980 0.0141 6 6 5.2444 1.8143 -1.3984 7 8 4.6812 1.2635 -2.3206 8 7 6.2977 2.6205 -1.6370 9 6 6.7628 2.8312 -3.0101 10 6 7.9625 3.7807 -3.0023 11 6 7.5478 5.1214 -2.3929 12 6 9.0912 3.1694 -2.1696 13 6 8.4413 3.9969 -4.4148 14 1 7.9397 3.5065 -5.2360 15 6 9.5189 4.8217 -4.6587 16 7 10.1293 5.4192 -3.6588 17 14 10.1127 5.0891 -6.4095 18 1 9.2632 4.3092 -7.3450 19 1 10.0240 6.5325 -6.7472 20 1 11.5229 4.6388 -6.5281 21 6 3.6963 -0.6858 0.0050 22 6 4.7588 -1.5840 0.0099 23 6 4.5096 -2.9387 0.0070 24 6 3.2069 -3.4189 -0.0013 25 6 2.1487 -2.5548 -0.0073 26 6 2.3784 -1.1776 -0.0042 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3633 0.8902 0.5135 30 1 1.9635 2.1035 -0.0004 31 1 4.4700 2.5533 0.4478 32 1 5.5697 1.1628 0.6076 33 1 6.7475 3.0619 -0.8995 34 1 7.0586 1.8761 -3.4441 35 1 5.9584 3.2663 -3.6033 36 1 7.2017 4.9647 -1.3712 37 1 8.4026 5.7978 -2.3869 38 1 6.7436 5.5569 -2.9860 39 1 9.3867 2.2143 -2.6038 40 1 9.9461 3.8457 -2.1644 41 1 8.7453 3.0127 -1.1480 42 1 10.8872 5.9997 -3.8305 43 1 5.7758 -1.2202 0.0159 44 1 5.3357 -3.6342 0.0104 45 1 3.0288 -4.4842 -0.0039 46 1 1.1381 -2.9357 -0.0141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330834338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:07 Heat of formation + Delta-G solvation = 16.492062 kcal Electronic energy + Delta-G solvation = -25740.912923 eV Core-core repulsion = 22209.738493 eV Total energy + Delta-G solvation = -3531.174430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43181 -39.28005 -37.04109 -36.38214 -33.75305 -33.40207 -31.14031 -30.34106 -29.82252 -28.49086 -26.05654 -25.81307 -25.38141 -24.35442 -22.66900 -21.57731 -20.31078 -19.52765 -18.89613 -17.35918 -16.89931 -16.58806 -15.86884 -15.44042 -15.14665 -14.96254 -14.83219 -14.34945 -13.95006 -13.80231 -13.38725 -13.27329 -13.10156 -12.96702 -12.76795 -12.63055 -12.28118 -12.13284 -12.07945 -11.50270 -11.45521 -11.38691 -11.26989 -10.93623 -10.77962 -10.71555 -10.47185 -10.26631 -9.78845 -9.72410 -9.48573 -9.32029 -8.85809 -8.57268 -8.41188 -8.12213 -7.51455 -6.08471 -4.18630 1.16712 1.66489 2.55247 2.77050 2.80068 3.23285 3.32151 3.36740 3.62000 3.97729 4.35344 4.59633 4.65848 4.75109 4.91255 4.95668 4.99525 5.13247 5.18674 5.26175 5.33948 5.54594 5.66339 5.72056 5.76694 5.88897 5.95532 6.12279 6.18430 6.23014 6.41258 6.51458 6.63526 6.66696 6.72570 6.78016 6.82596 6.84311 6.89147 6.92883 7.23568 7.26101 7.28823 7.47412 7.63107 7.87941 7.93206 8.06570 8.30859 8.50887 8.82245 9.47757 10.93030 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002707 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.379702 B =10339.592125 C =10718.899918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.179 4.179 3 C 0.061 3.939 4 N -0.464 5.464 5 C 0.089 3.911 6 C 0.482 3.518 7 O -0.531 6.531 8 N -0.713 5.713 9 C 0.133 3.867 10 C 0.056 3.944 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.507 4.507 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.112 3.888 22 C -0.123 4.123 23 C -0.103 4.103 24 C -0.151 4.151 25 C -0.073 4.073 26 C -0.103 4.103 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.165 0.835 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.398 0.602 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.006 0.994 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.086 0.914 41 H 0.006 0.994 42 H 0.260 0.740 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 -9.593 12.507 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.186 4.186 3 C -0.063 4.063 4 N -0.146 5.146 5 C -0.037 4.037 6 C 0.265 3.735 7 O -0.407 6.407 8 N -0.365 5.365 9 C 0.011 3.989 10 C 0.056 3.944 11 C -0.189 4.189 12 C -0.189 4.189 13 C -0.545 4.545 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.007 3.993 22 C -0.144 4.144 23 C -0.122 4.122 24 C -0.170 4.170 25 C -0.092 4.092 26 C -0.107 4.107 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.182 0.818 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.234 0.766 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.024 0.976 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.105 0.895 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.134 0.866 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.921 -9.610 11.852 19.994 hybrid contribution 0.826 0.576 -0.718 1.236 sum -12.095 -9.034 11.134 18.758 Atomic orbital electron populations 1.20047 0.89577 1.01822 1.01547 1.20197 0.95062 0.90779 1.12549 1.21535 0.81590 0.99162 1.04046 1.43303 1.05009 1.03726 1.62583 1.21647 0.89592 0.95815 0.96651 1.20809 0.81439 0.80353 0.90933 1.90752 1.56357 1.48404 1.45215 1.46292 1.31389 1.47086 1.11710 1.21752 0.97705 0.99971 0.79500 1.18361 0.89293 0.90557 0.96213 1.21839 1.01341 1.00673 0.95027 1.21839 1.02196 1.00121 0.94730 1.21020 1.14167 1.27973 0.91388 0.92381 1.24876 0.96187 0.95341 0.97076 1.69802 1.21843 1.30706 1.30094 0.86511 0.78620 0.77930 0.84824 1.19731 1.21015 1.21002 1.18172 0.95470 0.82600 1.03096 1.20036 0.96622 0.92316 1.05401 1.20757 0.96939 0.94053 1.00459 1.20568 0.92494 0.99250 1.04685 1.20187 0.98836 0.90869 0.99273 1.19052 0.91828 0.93183 1.06644 0.92023 0.92081 0.92094 0.81788 0.86436 0.86964 0.76637 0.92660 0.92667 0.97553 0.89506 0.95418 0.95411 0.89507 0.97549 0.93003 0.86615 0.85978 0.86327 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.41 36.00 0.37 -0.31 16 2 C -0.18 -2.28 6.32 -102.71 -0.65 -2.93 16 3 C 0.06 0.77 11.19 -16.73 -0.19 0.58 16 4 N -0.46 -6.33 2.27 -115.71 -0.26 -6.60 16 5 C 0.09 1.04 6.48 -5.19 -0.03 1.00 16 6 C 0.48 7.84 7.90 -10.99 -0.09 7.75 16 7 O -0.53 -11.15 16.42 5.55 0.09 -11.05 16 8 N -0.71 -11.75 4.96 -60.29 -0.30 -12.05 16 9 C 0.13 2.74 4.50 -4.04 -0.02 2.72 16 10 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 11 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 12 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 13 C -0.51 -13.08 8.01 -34.44 -0.28 -13.36 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 16 N -0.89 -23.18 9.35 55.43 0.52 -22.66 16 17 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.11 1.66 6.80 -83.99 -0.57 1.09 16 22 C -0.12 -1.69 10.00 -39.43 -0.39 -2.08 16 23 C -0.10 -1.24 10.01 -39.54 -0.40 -1.63 16 24 C -0.15 -1.73 9.97 -39.94 -0.40 -2.13 16 25 C -0.07 -0.90 10.05 -39.64 -0.40 -1.30 16 26 C -0.10 -1.46 6.35 -105.14 -0.67 -2.12 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.12 0.98 8.12 -51.93 -0.42 0.56 16 32 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.40 5.68 6.16 -40.82 -0.25 5.43 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 37 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 41 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 42 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -31.11 375.29 -9.64 -40.75 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.05 Total: 5.44 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.27 Total: -14.98 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.04 Total: -41.31 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.11 -9.64 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330834338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.242 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds