Wall clock time and date at job start Tue Mar 31 2020 11:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34239 * 126.50342 * 2 1 4 4 N 1.36835 * 109.93059 * 179.71006 * 3 2 1 5 5 C 1.46502 * 125.06342 * 180.27069 * 4 3 2 6 6 C 1.50702 * 109.46833 * 264.97326 * 5 4 3 7 7 O 1.21283 * 119.99820 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00291 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00459 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47391 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47044 * 300.00089 * 10 9 8 12 12 C 1.53005 * 109.46913 * 59.99829 * 10 9 8 13 13 C 1.50702 * 109.47223 * 179.97438 * 10 9 8 14 14 H 1.08001 * 119.99907 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99738 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00281 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99381 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47660 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46832 * 120.00474 * 17 15 13 20 20 H 1.48501 * 109.47012 * 239.99797 * 17 15 13 21 21 C 1.37688 * 109.87251 * 0.26493 * 4 3 2 22 22 C 1.39125 * 133.50694 * 180.02562 * 21 4 3 23 23 C 1.37748 * 119.78247 * 179.97438 * 22 21 4 24 24 C 1.38837 * 120.66139 * 0.02562 * 23 22 21 25 25 C 1.36626 * 120.53059 * 0.02562 * 24 23 22 26 26 C 1.39630 * 119.76271 * 359.95930 * 25 24 23 27 27 H 1.09006 * 109.46635 * 90.02116 * 1 2 3 28 28 H 1.08997 * 109.47269 * 210.01974 * 1 2 3 29 29 H 1.08998 * 109.46850 * 330.02438 * 1 2 3 30 30 H 1.08002 * 125.03689 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.47138 * 24.97145 * 5 4 3 32 32 H 1.08998 * 109.47142 * 144.97685 * 5 4 3 33 33 H 0.97003 * 120.00193 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47002 * 300.00075 * 9 8 6 35 35 H 1.09003 * 109.46603 * 60.00053 * 9 8 6 36 36 H 1.09002 * 109.47116 * 59.99592 * 11 10 9 37 37 H 1.09002 * 109.47307 * 179.97438 * 11 10 9 38 38 H 1.09003 * 109.47289 * 300.00280 * 11 10 9 39 39 H 1.09000 * 109.46810 * 60.00545 * 12 10 9 40 40 H 1.09002 * 109.46600 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.47487 * 299.99990 * 12 10 9 42 42 H 0.96995 * 119.99890 * 180.02562 * 16 15 13 43 43 H 1.08008 * 120.11037 * 359.97438 * 22 21 4 44 44 H 1.07992 * 119.66845 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.73163 * 179.97438 * 24 23 22 46 46 H 1.07998 * 120.11907 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6887 0.0065 5 6 4.7657 1.5980 0.0141 6 6 5.2444 1.8143 -1.3984 7 8 4.6812 1.2635 -2.3206 8 7 6.2977 2.6205 -1.6370 9 6 6.7628 2.8312 -3.0101 10 6 7.9625 3.7807 -3.0023 11 6 7.5478 5.1214 -2.3929 12 6 9.0912 3.1694 -2.1696 13 6 8.4413 3.9969 -4.4148 14 1 7.9397 3.5065 -5.2360 15 6 9.5189 4.8217 -4.6587 16 7 10.1293 5.4192 -3.6588 17 14 10.1127 5.0891 -6.4095 18 1 9.2632 4.3092 -7.3450 19 1 10.0240 6.5325 -6.7472 20 1 11.5229 4.6388 -6.5281 21 6 3.6963 -0.6858 0.0050 22 6 4.7588 -1.5840 0.0099 23 6 4.5096 -2.9387 0.0070 24 6 3.2069 -3.4189 -0.0013 25 6 2.1487 -2.5548 -0.0073 26 6 2.3784 -1.1776 -0.0042 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3633 0.8902 0.5135 30 1 1.9635 2.1035 -0.0004 31 1 4.4700 2.5533 0.4478 32 1 5.5697 1.1628 0.6076 33 1 6.7475 3.0619 -0.8995 34 1 7.0586 1.8761 -3.4441 35 1 5.9584 3.2663 -3.6033 36 1 7.2017 4.9647 -1.3712 37 1 8.4026 5.7978 -2.3869 38 1 6.7436 5.5569 -2.9860 39 1 9.3867 2.2143 -2.6038 40 1 9.9461 3.8457 -2.1644 41 1 8.7453 3.0127 -1.1480 42 1 10.8872 5.9997 -3.8305 43 1 5.7758 -1.2202 0.0159 44 1 5.3357 -3.6342 0.0104 45 1 3.0288 -4.4842 -0.0039 46 1 1.1381 -2.9357 -0.0141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330834338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:06 Heat of formation + Delta-G solvation = 0.567160 kcal Electronic energy + Delta-G solvation = -25741.603478 eV Core-core repulsion = 22209.738493 eV Total energy + Delta-G solvation = -3531.864986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37332 -40.64535 -38.27888 -37.76111 -35.07389 -34.67195 -32.85598 -31.36740 -30.70340 -29.46223 -27.57930 -27.53944 -27.03913 -25.64363 -23.61440 -22.59460 -21.57531 -20.66233 -20.42101 -18.71202 -17.93207 -17.71884 -17.49473 -16.63801 -16.44762 -16.34271 -16.25706 -15.57479 -14.99502 -14.87883 -14.80525 -14.59213 -14.52662 -14.02656 -13.94985 -13.62153 -13.59075 -13.25176 -13.13065 -13.00680 -12.92186 -12.70084 -12.60874 -12.45241 -12.27632 -12.21035 -12.16540 -11.67082 -11.51309 -11.33954 -10.99564 -10.71992 -10.42830 -10.37978 -10.02884 -9.07481 -8.43906 -8.05615 -6.21207 0.23415 0.71209 1.38558 1.43224 1.51907 1.53526 1.58986 1.87246 2.34559 2.48548 3.02302 3.18129 3.68594 3.76107 3.81842 3.92686 4.10351 4.15296 4.29273 4.39662 4.45551 4.48665 4.49554 4.67475 4.68779 4.87768 4.90453 4.95542 4.97095 5.02922 5.03525 5.07769 5.17045 5.21925 5.31575 5.33424 5.53526 5.60860 5.64961 5.65619 5.71983 5.88767 5.93097 6.14124 6.19399 6.32937 6.34155 6.41140 6.60532 6.83075 7.22155 7.46861 8.93176 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002707 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.379702 B =10339.592125 C =10718.899918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.193 4.193 3 C 0.048 3.952 4 N -0.472 5.472 5 C 0.096 3.904 6 C 0.484 3.516 7 O -0.582 6.582 8 N -0.704 5.704 9 C 0.151 3.849 10 C 0.053 3.947 11 C -0.121 4.121 12 C -0.122 4.122 13 C -0.531 4.531 14 H 0.041 0.959 15 C 0.030 3.970 16 N -0.897 5.897 17 Si 0.942 3.058 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.083 3.917 22 C -0.146 4.146 23 C -0.108 4.108 24 C -0.154 4.154 25 C -0.083 4.083 26 C -0.131 4.131 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.191 0.809 31 H 0.159 0.841 32 H 0.138 0.862 33 H 0.413 0.587 34 H 0.033 0.967 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.015 0.985 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.261 0.739 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.697 -9.829 14.177 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.200 4.200 3 C -0.076 4.076 4 N -0.155 5.155 5 C -0.029 4.029 6 C 0.269 3.731 7 O -0.462 6.462 8 N -0.356 5.356 9 C 0.027 3.973 10 C 0.052 3.948 11 C -0.179 4.179 12 C -0.179 4.179 13 C -0.570 4.570 14 H 0.059 0.941 15 C -0.170 4.170 16 N -0.536 5.536 17 Si 0.769 3.231 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.022 4.022 22 C -0.167 4.167 23 C -0.127 4.127 24 C -0.173 4.173 25 C -0.101 4.101 26 C -0.136 4.136 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.208 0.792 31 H 0.176 0.824 32 H 0.156 0.844 33 H 0.251 0.749 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.137 0.863 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.681 -9.834 13.560 21.628 hybrid contribution 1.039 0.580 -1.249 1.725 sum -12.643 -9.254 12.311 19.926 Atomic orbital electron populations 1.20094 0.87609 1.03154 1.01812 1.20665 0.96588 0.90466 1.12280 1.22082 0.81350 1.00461 1.03718 1.43485 1.05744 1.03569 1.62678 1.21818 0.90090 0.97790 0.93196 1.21656 0.80192 0.78657 0.92552 1.90734 1.57827 1.50189 1.47455 1.46055 1.31767 1.47488 1.10308 1.21233 0.96365 0.98122 0.81621 1.18344 0.90107 0.91523 0.94803 1.21679 0.99983 0.99320 0.96944 1.21683 1.01001 0.98690 0.96570 1.21309 1.14580 1.28193 0.92883 0.94100 1.25411 0.96391 0.95327 0.99836 1.69896 1.21889 1.30748 1.31050 0.85748 0.78036 0.77739 0.81531 1.20236 1.20597 1.20655 1.18539 0.96143 0.83530 1.04008 1.20275 0.96727 0.93134 1.06532 1.21127 0.98112 0.93954 0.99478 1.20945 0.92073 1.00661 1.03624 1.20536 1.00203 0.90524 0.98881 1.19525 0.92279 0.94433 1.07326 0.92167 0.91301 0.90256 0.79187 0.82364 0.84387 0.74931 0.94873 0.94608 0.93887 0.91893 0.96377 0.96534 0.91860 0.93966 0.92966 0.86346 0.83800 0.83586 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.41 71.24 0.74 -0.45 16 2 C -0.19 -4.72 6.32 -18.63 -0.12 -4.83 16 3 C 0.05 1.13 11.19 83.00 0.93 2.05 16 4 N -0.47 -12.21 2.27 -519.99 -1.18 -13.39 16 5 C 0.10 1.98 6.48 85.63 0.56 2.54 16 6 C 0.48 15.11 7.90 87.66 0.69 15.81 16 7 O -0.58 -24.60 16.42 -3.04 -0.05 -24.65 16 8 N -0.70 -22.06 4.96 -463.06 -2.30 -24.36 16 9 C 0.15 6.24 4.50 86.38 0.39 6.63 16 10 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 11 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 12 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 13 C -0.53 -27.89 8.01 25.60 0.21 -27.68 16 14 H 0.04 2.22 7.74 -2.91 -0.02 2.20 16 15 C 0.03 1.58 5.15 84.65 0.44 2.02 16 16 N -0.90 -46.98 9.35 21.45 0.20 -46.78 16 17 Si 0.94 42.38 29.54 68.60 2.03 44.41 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C 0.08 2.43 6.80 39.03 0.27 2.69 16 22 C -0.15 -3.94 10.00 22.37 0.22 -3.71 16 23 C -0.11 -2.47 10.01 22.30 0.22 -2.25 16 24 C -0.15 -3.30 9.97 22.04 0.22 -3.08 16 25 C -0.08 -1.96 10.05 22.23 0.22 -1.73 16 26 C -0.13 -3.64 6.35 -20.20 -0.13 -3.77 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 30 H 0.19 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.16 1.98 8.12 -2.39 -0.02 1.96 16 32 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.41 10.48 6.16 -92.71 -0.57 9.91 16 34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 37 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 41 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 42 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 43 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -69.47 375.29 5.10 -64.37 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.40 Total: 23.01 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 5.99 Total: -22.61 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -3.27 Total: -84.53 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -69.47 5.10 -64.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330834338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.935 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds