Wall clock time and date at job start Tue Mar 31 2020 10:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38283 * 119.92458 * 2 1 4 4 C 1.38113 * 120.07477 * 180.02562 * 3 2 1 5 5 C 1.38896 * 119.92220 * 359.97438 * 4 3 2 6 6 N 1.39831 * 120.07097 * 180.02562 * 5 4 3 7 7 C 1.46496 * 120.00231 * 173.19588 * 6 5 4 8 8 C 1.50699 * 109.47219 * 288.46468 * 7 6 5 9 9 H 1.08001 * 119.99629 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00059 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00028 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99974 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46823 * 60.00217 * 12 10 8 14 14 H 1.48494 * 109.47170 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47252 * 300.00536 * 12 10 8 16 16 C 1.34779 * 120.00195 * 353.19379 * 6 5 4 17 17 O 1.21633 * 119.99414 * 6.33144 * 16 6 5 18 18 C 1.47059 * 120.00710 * 186.33199 * 16 6 5 19 19 C 1.31845 * 120.01924 * 136.17910 * 18 16 6 20 20 C 1.51471 * 119.97752 * 179.97438 * 19 18 16 21 21 C 1.53119 * 108.45990 * 289.66820 * 20 19 18 22 22 N 1.45563 * 110.76460 * 84.95616 * 21 20 19 23 23 C 1.45572 * 116.05225 * 291.61437 * 22 21 20 24 24 C 1.51474 * 120.00692 * 316.16185 * 18 16 6 25 25 C 1.38893 * 119.85768 * 0.27079 * 5 4 3 26 26 C 1.38110 * 119.92527 * 359.45041 * 25 5 4 27 27 H 1.09005 * 109.46989 * 89.99969 * 1 2 3 28 28 H 1.09002 * 109.47147 * 209.99913 * 1 2 3 29 29 H 1.08993 * 109.47310 * 329.99786 * 1 2 3 30 30 H 1.08005 * 119.96533 * 0.02562 * 3 2 1 31 31 H 1.07991 * 120.03664 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47093 * 48.46575 * 7 6 5 33 33 H 1.09001 * 109.47358 * 168.46691 * 7 6 5 34 34 H 0.96996 * 119.99872 * 179.97438 * 11 10 8 35 35 H 1.08001 * 120.01030 * 359.97438 * 19 18 16 36 36 H 1.09002 * 109.63534 * 49.35365 * 20 19 18 37 37 H 1.09000 * 109.64303 * 169.97325 * 20 19 18 38 38 H 1.08999 * 109.21149 * 205.28540 * 21 20 19 39 39 H 1.08994 * 109.21748 * 324.62159 * 21 20 19 40 40 H 1.00894 * 111.00400 * 59.56262 * 22 21 20 41 41 H 1.09001 * 109.22194 * 308.05455 * 23 22 21 42 42 H 1.08995 * 109.22201 * 188.71542 * 23 22 21 43 43 H 1.09000 * 109.64191 * 10.04290 * 24 18 16 44 44 H 1.08999 * 109.63905 * 130.66095 * 24 18 16 45 45 H 1.08000 * 120.03849 * 179.72747 * 25 5 4 46 46 H 1.07998 * 119.96723 * 180.27611 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2021 -0.0005 5 6 4.2740 0.0001 -0.0005 6 7 5.6723 0.0001 -0.0005 7 6 6.4048 -1.2596 0.1498 8 6 6.2663 -1.7553 1.5661 9 1 5.6906 -1.1884 2.2828 10 6 6.8747 -2.9325 1.9471 11 7 7.5762 -3.6225 1.0746 12 14 6.7036 -3.5467 3.7030 13 1 5.2681 -3.7682 4.0122 14 1 7.4460 -4.8236 3.8553 15 1 7.2609 -2.5360 4.6374 16 6 6.3462 1.1591 -0.1389 17 8 5.7435 2.2156 -0.1480 18 6 7.8100 1.1465 -0.2788 19 6 8.3932 1.9130 -1.1792 20 6 9.9011 1.8997 -1.3221 21 6 10.5109 2.5723 -0.0891 22 7 10.6559 1.6182 1.0006 23 6 9.4187 1.1365 1.5974 24 6 8.6485 0.2530 0.6118 25 6 3.5780 -1.2019 -0.0057 26 6 2.1969 -1.1985 0.0007 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6550 2.1328 0.0004 31 1 4.1161 2.1384 -0.0010 32 1 5.9964 -2.0015 -0.5364 33 1 7.4585 -1.0964 -0.0766 34 1 8.0044 -4.4505 1.3427 35 1 7.7960 2.5502 -1.8146 36 1 10.2535 0.8705 -1.3898 37 1 10.1890 2.4484 -2.2188 38 1 11.4909 2.9738 -0.3474 39 1 9.8631 3.3880 0.2319 40 1 11.2508 0.8491 0.7311 41 1 8.7987 1.9888 1.8754 42 1 9.6528 0.5576 2.4908 43 1 7.9998 -0.4293 1.1612 44 1 9.3513 -0.3155 0.0028 45 1 4.1163 -2.1382 -0.0102 46 1 1.6552 -2.1327 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579708648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:12 Heat of formation + Delta-G solvation = 30.535895 kcal Electronic energy + Delta-G solvation = -26972.510626 eV Core-core repulsion = 23441.945183 eV Total energy + Delta-G solvation = -3530.565444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49191 -38.67386 -37.60296 -35.57657 -33.36052 -32.82348 -31.93942 -30.95954 -30.29585 -27.79066 -26.63636 -25.66398 -24.26227 -23.41665 -21.95164 -21.55025 -21.19410 -19.77418 -17.71321 -16.99459 -16.72495 -16.34607 -15.69678 -15.18610 -14.80891 -14.62894 -14.49259 -14.47722 -13.90795 -13.63685 -13.55112 -13.30855 -13.05489 -12.86034 -12.83290 -12.44587 -12.21968 -11.87864 -11.71348 -11.47454 -11.42192 -11.19956 -11.07579 -11.01546 -10.88987 -10.64290 -10.51010 -10.26310 -10.17128 -9.95720 -9.29990 -9.13259 -8.74477 -8.56170 -8.29571 -7.90077 -7.08487 -6.32945 -4.41749 1.65523 2.05923 2.14778 3.18081 3.23047 3.26608 3.42718 3.67397 4.22329 4.44212 4.48975 4.84756 4.99200 5.09252 5.13234 5.27856 5.34539 5.38839 5.46925 5.59245 5.63742 5.69720 5.73573 5.81655 5.82682 5.86212 6.00883 6.05325 6.14786 6.16793 6.24089 6.30124 6.47944 6.53375 6.61409 6.68821 6.81123 6.92689 6.97556 7.07497 7.09457 7.19530 7.32286 7.43413 7.59234 7.60375 7.80290 7.86796 8.12064 8.60941 8.75179 9.26093 10.72460 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.005845 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.473641 B = 4789.251514 C = 7020.632876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.109 4.109 4 C -0.178 4.178 5 C 0.166 3.834 6 N -0.526 5.526 7 C 0.208 3.792 8 C -0.539 4.539 9 H 0.064 0.936 10 C 0.072 3.928 11 N -0.885 5.885 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.552 3.448 17 O -0.543 6.543 18 C -0.142 4.142 19 C -0.110 4.110 20 C -0.127 4.127 21 C 0.076 3.924 22 N -0.708 5.708 23 C 0.076 3.924 24 C -0.148 4.148 25 C -0.132 4.132 26 C -0.106 4.106 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.178 0.822 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.268 0.732 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.342 0.658 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.139 0.861 44 H 0.074 0.926 45 H 0.138 0.862 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 6.480 -3.864 7.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 C -0.128 4.128 4 C -0.197 4.197 5 C 0.070 3.930 6 N -0.244 5.244 7 C 0.090 3.910 8 C -0.577 4.577 9 H 0.082 0.918 10 C -0.133 4.133 11 N -0.522 5.522 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.344 3.656 17 O -0.425 6.425 18 C -0.145 4.145 19 C -0.129 4.129 20 C -0.167 4.167 21 C -0.054 4.054 22 N -0.338 5.338 23 C -0.053 4.053 24 C -0.186 4.186 25 C -0.152 4.152 26 C -0.125 4.125 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.194 0.806 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.161 0.839 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.156 0.844 44 H 0.093 0.907 45 H 0.156 0.844 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.075 7.301 -3.436 8.069 hybrid contribution -0.492 -1.318 0.168 1.417 sum -0.567 5.983 -3.267 6.841 Atomic orbital electron populations 1.20658 0.92148 1.01889 1.01346 1.19774 0.95379 0.93538 1.04493 1.20877 0.93993 0.96731 1.01190 1.22762 0.94367 1.00297 1.02310 1.18009 0.82652 0.94212 0.98110 1.45905 1.04264 1.09998 1.64232 1.20282 0.93910 0.78831 0.98022 1.21268 1.33571 1.07592 0.95257 0.91790 1.24891 0.94504 0.95945 0.97920 1.69904 1.32207 1.15693 1.34442 0.86556 0.78662 0.78221 0.84215 1.19934 1.21016 1.19837 1.18671 0.87937 0.83019 0.75975 1.90350 1.68320 1.31789 1.52043 1.21287 0.92525 1.00422 1.00280 1.23092 0.96113 0.96609 0.97099 1.21701 0.92543 1.02099 1.00308 1.21617 1.00250 0.95217 0.88272 1.58410 1.18155 1.21246 1.35956 1.21681 0.89194 0.97974 0.96476 1.22354 0.99952 0.98164 0.98109 1.21073 0.93917 0.97732 1.02506 1.20724 0.93517 0.97005 1.01215 0.92132 0.92224 0.92312 0.86913 0.80561 0.94692 0.90787 0.92188 0.86778 0.90537 0.90851 0.90805 0.91041 0.83892 0.91391 0.90243 0.84358 0.90735 0.84438 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.01 36.01 0.36 -0.94 16 2 C -0.13 -2.16 5.88 -104.59 -0.62 -2.77 16 3 C -0.11 -1.91 9.69 -39.61 -0.38 -2.29 16 4 C -0.18 -3.60 9.06 -39.38 -0.36 -3.96 16 5 C 0.17 3.57 6.30 -83.72 -0.53 3.04 16 6 N -0.53 -11.48 2.76 -116.07 -0.32 -11.80 16 7 C 0.21 4.76 4.01 -5.20 -0.02 4.74 16 8 C -0.54 -13.27 6.84 -34.44 -0.24 -13.51 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -22.66 13.29 55.43 0.74 -21.93 16 12 Si 0.90 19.82 29.54 -169.99 -5.02 14.79 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.55 11.56 7.20 -12.68 -0.09 11.47 16 17 O -0.54 -11.93 13.30 5.25 0.07 -11.86 16 18 C -0.14 -2.55 4.42 -102.57 -0.45 -3.01 16 19 C -0.11 -1.68 8.96 -35.83 -0.32 -2.00 16 20 C -0.13 -1.53 5.66 -27.44 -0.16 -1.69 16 21 C 0.08 0.90 6.30 -4.48 -0.03 0.88 16 22 N -0.71 -9.32 6.39 -115.62 -0.74 -10.06 16 23 C 0.08 1.18 6.30 -4.47 -0.03 1.15 16 24 C -0.15 -2.59 3.71 -27.43 -0.10 -2.69 16 25 C -0.13 -2.69 8.90 -39.39 -0.35 -3.04 16 26 C -0.11 -1.87 9.69 -39.61 -0.38 -2.25 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.18 3.75 4.52 -56.28 -0.25 3.50 16 32 H 0.04 0.86 7.01 -51.93 -0.36 0.49 16 33 H 0.07 1.67 3.99 -51.93 -0.21 1.47 16 34 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.11 1.74 8.01 -52.49 -0.42 1.32 16 36 H 0.08 0.94 6.96 -51.93 -0.36 0.58 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.92 7.86 -51.93 -0.41 0.52 16 40 H 0.34 4.10 8.67 -39.29 -0.34 3.76 16 41 H 0.07 1.13 7.86 -51.93 -0.41 0.73 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.14 2.91 3.94 -51.93 -0.20 2.70 16 44 H 0.07 1.27 6.93 -51.93 -0.36 0.91 16 45 H 0.14 2.96 6.14 -52.49 -0.32 2.64 16 46 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -26.70 357.86 -10.24 -36.94 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.57 Total: 13.73 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -3.79 Total: -15.20 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.32 Total: -43.79 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.86 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.70 -10.24 -36.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579708648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.478 kcal (2) G-P(sol) polarization free energy of solvation -26.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds