Wall clock time and date at job start Tue Mar 31 2020 10:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38283 * 119.92458 * 2 1 4 4 C 1.38113 * 120.07477 * 180.02562 * 3 2 1 5 5 C 1.38896 * 119.92220 * 359.97438 * 4 3 2 6 6 N 1.39831 * 120.07097 * 180.02562 * 5 4 3 7 7 C 1.46496 * 120.00231 * 173.19588 * 6 5 4 8 8 C 1.50699 * 109.47219 * 288.46468 * 7 6 5 9 9 H 1.08001 * 119.99629 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00059 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00028 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99974 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46823 * 60.00217 * 12 10 8 14 14 H 1.48494 * 109.47170 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47252 * 300.00536 * 12 10 8 16 16 C 1.34779 * 120.00195 * 353.19379 * 6 5 4 17 17 O 1.21633 * 119.99414 * 6.33144 * 16 6 5 18 18 C 1.47059 * 120.00710 * 186.33199 * 16 6 5 19 19 C 1.31845 * 120.01924 * 136.17910 * 18 16 6 20 20 C 1.51471 * 119.97752 * 179.97438 * 19 18 16 21 21 C 1.53119 * 108.45990 * 289.66820 * 20 19 18 22 22 N 1.45563 * 110.76460 * 84.95616 * 21 20 19 23 23 C 1.45572 * 116.05225 * 291.61437 * 22 21 20 24 24 C 1.51474 * 120.00692 * 316.16185 * 18 16 6 25 25 C 1.38893 * 119.85768 * 0.27079 * 5 4 3 26 26 C 1.38110 * 119.92527 * 359.45041 * 25 5 4 27 27 H 1.09005 * 109.46989 * 89.99969 * 1 2 3 28 28 H 1.09002 * 109.47147 * 209.99913 * 1 2 3 29 29 H 1.08993 * 109.47310 * 329.99786 * 1 2 3 30 30 H 1.08005 * 119.96533 * 0.02562 * 3 2 1 31 31 H 1.07991 * 120.03664 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47093 * 48.46575 * 7 6 5 33 33 H 1.09001 * 109.47358 * 168.46691 * 7 6 5 34 34 H 0.96996 * 119.99872 * 179.97438 * 11 10 8 35 35 H 1.08001 * 120.01030 * 359.97438 * 19 18 16 36 36 H 1.09002 * 109.63534 * 49.35365 * 20 19 18 37 37 H 1.09000 * 109.64303 * 169.97325 * 20 19 18 38 38 H 1.08999 * 109.21149 * 205.28540 * 21 20 19 39 39 H 1.08994 * 109.21748 * 324.62159 * 21 20 19 40 40 H 1.00894 * 111.00400 * 59.56262 * 22 21 20 41 41 H 1.09001 * 109.22194 * 308.05455 * 23 22 21 42 42 H 1.08995 * 109.22201 * 188.71542 * 23 22 21 43 43 H 1.09000 * 109.64191 * 10.04290 * 24 18 16 44 44 H 1.08999 * 109.63905 * 130.66095 * 24 18 16 45 45 H 1.08000 * 120.03849 * 179.72747 * 25 5 4 46 46 H 1.07998 * 119.96723 * 180.27611 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2021 -0.0005 5 6 4.2740 0.0001 -0.0005 6 7 5.6723 0.0001 -0.0005 7 6 6.4048 -1.2596 0.1498 8 6 6.2663 -1.7553 1.5661 9 1 5.6906 -1.1884 2.2828 10 6 6.8747 -2.9325 1.9471 11 7 7.5762 -3.6225 1.0746 12 14 6.7036 -3.5467 3.7030 13 1 5.2681 -3.7682 4.0122 14 1 7.4460 -4.8236 3.8553 15 1 7.2609 -2.5360 4.6374 16 6 6.3462 1.1591 -0.1389 17 8 5.7435 2.2156 -0.1480 18 6 7.8100 1.1465 -0.2788 19 6 8.3932 1.9130 -1.1792 20 6 9.9011 1.8997 -1.3221 21 6 10.5109 2.5723 -0.0891 22 7 10.6559 1.6182 1.0006 23 6 9.4187 1.1365 1.5974 24 6 8.6485 0.2530 0.6118 25 6 3.5780 -1.2019 -0.0057 26 6 2.1969 -1.1985 0.0007 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6550 2.1328 0.0004 31 1 4.1161 2.1384 -0.0010 32 1 5.9964 -2.0015 -0.5364 33 1 7.4585 -1.0964 -0.0766 34 1 8.0044 -4.4505 1.3427 35 1 7.7960 2.5502 -1.8146 36 1 10.2535 0.8705 -1.3898 37 1 10.1890 2.4484 -2.2188 38 1 11.4909 2.9738 -0.3474 39 1 9.8631 3.3880 0.2319 40 1 11.2508 0.8491 0.7311 41 1 8.7987 1.9888 1.8754 42 1 9.6528 0.5576 2.4908 43 1 7.9998 -0.4293 1.1612 44 1 9.3513 -0.3155 0.0028 45 1 4.1163 -2.1382 -0.0102 46 1 1.6552 -2.1327 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579708648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:11 Heat of formation + Delta-G solvation = 16.240459 kcal Electronic energy + Delta-G solvation = -26973.130523 eV Core-core repulsion = 23441.945183 eV Total energy + Delta-G solvation = -3531.185340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05089 -40.00419 -38.97417 -37.24292 -34.84891 -34.43753 -33.20555 -32.26857 -31.78993 -29.58063 -27.91911 -26.97556 -25.49200 -25.22189 -23.41518 -22.95769 -22.39782 -21.24983 -19.13764 -18.82008 -18.25176 -17.91859 -17.07926 -16.59009 -16.47148 -16.16471 -16.03980 -15.59853 -15.28180 -14.97414 -14.82330 -14.58858 -14.46103 -14.35611 -14.20891 -14.12908 -13.59816 -13.24828 -12.99116 -12.94201 -12.84231 -12.68204 -12.64869 -12.28141 -12.19687 -12.11228 -11.99084 -11.88897 -11.78923 -11.47601 -10.80098 -10.65405 -10.62488 -10.12984 -9.79460 -9.05990 -8.66606 -8.24172 -6.40108 0.19783 0.55548 0.74974 1.39096 1.40955 1.47942 1.88607 2.09531 2.38395 2.98086 3.03603 3.32940 3.49252 3.79469 3.98269 4.08440 4.09958 4.24846 4.25961 4.28648 4.38784 4.44287 4.53048 4.57826 4.59281 4.63270 4.81263 4.89935 4.91039 4.92889 4.94523 5.09656 5.13681 5.17107 5.20524 5.21701 5.25479 5.41500 5.47815 5.54890 5.62978 5.67236 5.72939 5.81394 5.93600 6.29177 6.30526 6.43390 6.58701 6.70061 7.07338 7.30111 8.78792 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.005845 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.473641 B = 4789.251514 C = 7020.632876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.122 4.122 3 C -0.108 4.108 4 C -0.194 4.194 5 C 0.132 3.868 6 N -0.534 5.534 7 C 0.226 3.774 8 C -0.539 4.539 9 H 0.043 0.957 10 C 0.038 3.962 11 N -0.907 5.907 12 Si 0.947 3.053 13 H -0.278 1.278 14 H -0.276 1.276 15 H -0.271 1.271 16 C 0.543 3.457 17 O -0.562 6.562 18 C -0.176 4.176 19 C -0.083 4.083 20 C -0.122 4.122 21 C 0.077 3.923 22 N -0.704 5.704 23 C 0.087 3.913 24 C -0.134 4.134 25 C -0.151 4.151 26 C -0.107 4.107 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.165 0.835 32 H 0.010 0.990 33 H 0.078 0.922 34 H 0.271 0.729 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.352 0.648 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.237 7.245 -4.147 8.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C -0.127 4.127 4 C -0.214 4.214 5 C 0.037 3.963 6 N -0.252 5.252 7 C 0.107 3.893 8 C -0.577 4.577 9 H 0.061 0.939 10 C -0.164 4.164 11 N -0.545 5.545 12 Si 0.773 3.227 13 H -0.203 1.203 14 H -0.201 1.201 15 H -0.196 1.196 16 C 0.336 3.664 17 O -0.446 6.446 18 C -0.179 4.179 19 C -0.102 4.102 20 C -0.161 4.161 21 C -0.052 4.052 22 N -0.335 5.335 23 C -0.043 4.043 24 C -0.173 4.173 25 C -0.171 4.171 26 C -0.125 4.125 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.028 0.972 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.172 0.828 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.133 0.867 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.295 8.067 -3.725 8.890 hybrid contribution -0.506 -1.481 0.185 1.576 sum -0.801 6.586 -3.540 7.520 Atomic orbital electron populations 1.20734 0.88562 1.03462 1.02979 1.20249 0.97845 0.92384 1.01771 1.21236 0.92928 0.98631 0.99862 1.22744 0.95810 0.99250 1.03579 1.18347 0.82740 0.95209 1.00019 1.45913 1.04712 1.09825 1.64744 1.19961 0.93945 0.78879 0.96479 1.21218 1.33185 1.07649 0.95615 0.93890 1.25432 0.94216 0.95936 1.00809 1.69967 1.32789 1.16008 1.35711 0.85763 0.78281 0.77999 0.80668 1.20333 1.20078 1.19603 1.19220 0.89260 0.82499 0.75378 1.90326 1.69130 1.32045 1.53082 1.21216 0.90883 1.03064 1.02732 1.23483 0.98321 0.93813 0.94609 1.21794 0.89547 1.02867 1.01889 1.21710 1.01721 0.94373 0.87403 1.58398 1.16638 1.21664 1.36782 1.21480 0.89834 0.96915 0.96097 1.22118 0.99342 0.97792 0.98039 1.21041 0.95332 0.96491 1.04273 1.21067 0.92410 0.98923 1.00117 0.90292 0.90845 0.90649 0.83965 0.81840 0.97190 0.90430 0.91964 0.86701 0.90259 0.87736 0.87536 0.92176 0.82790 0.92890 0.90552 0.88040 0.90343 0.86673 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 10.01 71.24 0.71 -1.43 16 2 C -0.12 -3.78 5.88 -19.84 -0.12 -3.89 16 3 C -0.11 -3.67 9.69 22.25 0.22 -3.45 16 4 C -0.19 -8.11 9.06 22.40 0.20 -7.91 16 5 C 0.13 5.97 6.30 38.18 0.24 6.21 16 6 N -0.53 -24.83 2.76 -639.38 -1.76 -26.59 16 7 C 0.23 11.04 4.01 85.63 0.34 11.39 16 8 C -0.54 -27.93 6.84 25.60 0.18 -27.75 16 9 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 10 C 0.04 1.95 5.46 84.66 0.46 2.41 16 11 N -0.91 -47.55 13.29 21.45 0.28 -47.27 16 12 Si 0.95 41.29 29.54 68.60 2.03 43.31 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 C 0.54 23.95 7.20 86.56 0.62 24.57 16 17 O -0.56 -25.90 13.30 -4.14 -0.06 -25.96 16 18 C -0.18 -6.51 4.42 -18.10 -0.08 -6.59 16 19 C -0.08 -2.48 8.96 25.13 0.23 -2.26 16 20 C -0.12 -2.62 5.66 30.13 0.17 -2.45 16 21 C 0.08 1.63 6.30 86.60 0.55 2.18 16 22 N -0.70 -17.43 6.39 -519.71 -3.32 -20.76 16 23 C 0.09 2.72 6.30 86.60 0.55 3.27 16 24 C -0.13 -4.85 3.71 30.14 0.11 -4.74 16 25 C -0.15 -6.44 8.90 22.40 0.20 -6.24 16 26 C -0.11 -3.71 9.69 22.25 0.22 -3.50 16 27 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 29 H 0.07 1.39 8.08 -2.39 -0.02 1.38 16 30 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.17 7.27 4.52 -62.97 -0.28 6.99 16 32 H 0.01 0.53 7.01 -2.39 -0.02 0.52 16 33 H 0.08 3.72 3.99 -2.39 -0.01 3.71 16 34 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 35 H 0.12 3.42 8.01 -2.91 -0.02 3.40 16 36 H 0.08 1.75 6.96 -2.39 -0.02 1.73 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.44 7.86 -2.39 -0.02 1.42 16 40 H 0.35 7.71 8.67 -89.70 -0.78 6.93 16 41 H 0.05 1.81 7.86 -2.39 -0.02 1.79 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.10 4.50 3.94 -2.39 -0.01 4.49 16 44 H 0.08 2.69 6.93 -2.39 -0.02 2.68 16 45 H 0.12 5.34 6.14 -2.91 -0.02 5.32 16 46 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -60.79 357.86 1.92 -58.87 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -0.05 Total: 38.57 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 4.79 Total: -20.18 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -4.80 Total: -94.62 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.06 Total: -25.96 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -60.79 1.92 -58.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579708648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.109 kcal (2) G-P(sol) polarization free energy of solvation -60.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds