Wall clock time and date at job start Tue Mar 31 2020 11:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32676 * 1 3 3 C 1.47671 * 120.00077 * 2 1 4 4 C 1.39710 * 119.99668 * 180.02562 * 3 2 1 5 5 C 1.37598 * 120.00399 * 179.97438 * 4 3 2 6 6 C 1.39744 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.47682 * 120.00796 * 180.02562 * 6 5 4 8 8 O 1.21578 * 119.99969 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00060 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99608 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.01647 * 326.38203 * 10 9 7 12 12 C 1.53876 * 110.07668 * 87.80899 * 10 9 7 13 13 C 1.54268 * 106.59607 * 119.30446 * 12 10 9 14 14 C 1.54882 * 104.19992 * 23.60931 * 13 12 10 15 15 C 1.54268 * 110.02603 * 205.00004 * 10 9 7 16 16 H 1.08999 * 110.60474 * 335.78830 * 15 10 9 17 17 C 1.52997 * 110.48862 * 98.37951 * 15 10 9 18 18 N 1.46500 * 109.47458 * 181.22613 * 17 15 10 19 19 C 1.36941 * 120.00225 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99855 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99927 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00154 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99862 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46768 * 90.00242 * 23 21 19 25 25 H 1.48500 * 109.47131 * 209.99904 * 23 21 19 26 26 H 1.48499 * 109.47236 * 329.99746 * 23 21 19 27 27 C 1.39750 * 119.98790 * 0.27462 * 6 5 4 28 28 C 1.37598 * 119.99564 * 359.42540 * 27 6 5 29 29 H 1.08003 * 120.00270 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00212 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00270 * 179.97438 * 2 1 3 32 32 H 1.07998 * 119.99717 * 359.96296 * 4 3 2 33 33 H 1.08003 * 120.00504 * 180.02562 * 5 4 3 34 34 H 0.96995 * 120.00013 * 0.02562 * 9 7 6 35 35 H 1.08994 * 110.02975 * 238.58687 * 12 10 9 36 36 H 1.09000 * 110.03018 * 359.97370 * 12 10 9 37 37 H 1.09003 * 110.48471 * 264.93239 * 13 12 10 38 38 H 1.09004 * 110.48268 * 142.29006 * 13 12 10 39 39 H 1.08994 * 110.76048 * 203.74464 * 14 13 12 40 40 H 1.09004 * 110.75771 * 80.36858 * 14 13 12 41 41 H 1.09010 * 109.47031 * 301.22870 * 17 15 10 42 42 H 1.08998 * 109.47306 * 61.21988 * 17 15 10 43 43 H 0.96994 * 120.00058 * 0.02562 * 18 17 15 44 44 H 0.96998 * 119.99729 * 179.97438 * 22 21 19 45 45 H 1.08004 * 119.99574 * 179.70602 * 27 6 5 46 46 H 1.08003 * 119.99666 * 180.30031 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2788 -0.0005 5 6 4.1504 2.4703 -0.0011 6 6 3.4518 3.6806 -0.0005 7 6 4.1902 4.9596 -0.0017 8 8 5.4059 4.9596 -0.0036 9 7 3.5163 6.1268 -0.0017 10 6 4.2489 7.3955 -0.0034 11 1 5.1746 7.2925 0.5626 12 6 4.5592 7.8243 -1.4482 13 6 3.8642 9.1848 -1.6630 14 6 3.7141 9.7644 -0.2345 15 6 3.3761 8.5103 0.6094 16 1 2.3185 8.2630 0.5186 17 6 3.7478 8.7360 2.0763 18 7 2.8872 9.7770 2.6436 19 6 3.0366 10.1507 3.9526 20 1 3.7891 9.6784 4.5665 21 6 2.2215 11.1374 4.4899 22 7 1.3047 11.7135 3.7415 23 14 2.4257 11.6478 6.2752 24 1 3.4071 12.7588 6.3632 25 1 1.1174 12.0992 6.8137 26 1 2.9147 10.4912 7.0679 27 6 2.0543 3.6805 0.0064 28 6 1.3665 2.4887 0.0006 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8668 -0.9353 0.0004 32 1 4.0021 0.3434 -0.0004 33 1 5.2304 2.4702 -0.0019 34 1 2.5463 6.1267 -0.0005 35 1 5.6356 7.9295 -1.5834 36 1 4.1651 7.0882 -2.1489 37 1 2.8858 9.0450 -2.1227 38 1 4.4852 9.8377 -2.2763 39 1 2.8997 10.4877 -0.1947 40 1 4.6488 10.2146 0.0999 41 1 3.6113 7.8085 2.6326 42 1 4.7896 9.0495 2.1431 43 1 2.2111 10.2009 2.0924 44 1 0.7349 12.4027 4.1171 45 1 1.5143 4.6158 0.0116 46 1 0.2865 2.4886 0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753892685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:20 Heat of formation + Delta-G solvation = 6.917003 kcal Electronic energy + Delta-G solvation = -25144.904717 eV Core-core repulsion = 21613.315081 eV Total energy + Delta-G solvation = -3531.589636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44747 -39.09455 -37.76652 -34.54537 -34.47739 -33.58027 -31.39393 -31.31509 -29.99730 -28.57685 -27.48967 -24.77245 -24.08563 -22.97449 -22.16081 -21.30589 -20.18504 -20.01248 -19.60643 -18.04163 -16.99854 -16.75003 -16.21177 -15.38803 -15.16776 -15.00019 -14.67344 -14.52526 -14.33752 -13.88699 -13.66923 -13.57621 -13.25296 -13.18021 -13.09198 -12.82105 -12.56486 -12.07378 -11.73870 -11.64428 -11.37132 -11.20082 -10.94334 -10.82959 -10.75839 -10.69136 -10.45385 -10.36396 -10.30429 -9.99387 -9.89760 -9.69049 -9.30707 -9.00372 -8.85890 -8.54611 -6.90536 -5.75809 -3.03887 0.28204 1.11122 1.93545 2.94001 3.15810 3.44560 3.49864 3.51405 3.73308 4.31743 4.39253 4.53766 4.59375 4.66365 4.78724 4.85111 4.86588 5.01619 5.05982 5.11972 5.34884 5.46109 5.50500 5.57444 5.63988 5.67525 5.70057 5.79965 5.83218 5.87963 5.93228 5.95286 6.06773 6.07750 6.16954 6.22336 6.23528 6.30154 6.38106 6.54422 6.55982 6.58058 6.62356 6.79204 6.92064 7.51476 7.71853 8.20919 8.43505 9.54844 10.12468 10.47741 11.47188 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.002855 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.703585 B = 9803.338694 C =11129.669711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.038 4.038 4 C -0.119 4.119 5 C -0.059 4.059 6 C -0.132 4.132 7 C 0.556 3.444 8 O -0.539 6.539 9 N -0.713 5.713 10 C 0.146 3.854 11 H 0.095 0.905 12 C -0.131 4.131 13 C -0.125 4.125 14 C -0.110 4.110 15 C -0.102 4.102 16 H 0.078 0.922 17 C 0.161 3.839 18 N -0.730 5.730 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.082 4.082 28 C -0.123 4.123 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.017 0.983 42 H 0.021 0.979 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.129 0.871 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -20.700 -13.525 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.039 4.039 4 C -0.137 4.137 5 C -0.078 4.078 6 C -0.135 4.135 7 C 0.344 3.656 8 O -0.418 6.418 9 N -0.364 5.364 10 C 0.041 3.959 11 H 0.113 0.887 12 C -0.170 4.170 13 C -0.163 4.163 14 C -0.148 4.148 15 C -0.121 4.121 16 H 0.096 0.904 17 C 0.033 3.967 18 N -0.375 5.375 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.584 5.584 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.100 4.100 28 C -0.141 4.141 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.235 0.765 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.147 0.853 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.861 -20.665 -13.342 24.613 hybrid contribution -0.710 0.442 0.892 1.223 sum 0.151 -20.223 -12.450 23.749 Atomic orbital electron populations 1.24483 0.95689 1.02541 0.98110 1.21837 0.95283 0.95737 1.01312 1.19321 0.93433 0.93266 0.97844 1.21232 0.93157 0.98195 1.01093 1.21219 1.00897 0.90724 0.94934 1.20086 0.93678 0.93867 1.05843 1.18240 0.87292 0.83784 0.76333 1.90767 1.13378 1.87623 1.49999 1.46121 1.10276 1.05572 1.74467 1.21749 0.96205 0.81703 0.96216 0.88744 1.22542 1.01018 0.97306 0.96105 1.22389 1.00167 0.95892 0.97813 1.22444 1.02587 0.96782 0.92982 1.22430 0.99203 0.93945 0.96550 0.90359 1.20680 0.94275 0.92256 0.89470 1.42319 1.41078 1.43424 1.10637 1.19237 1.14423 1.15597 0.87580 0.91267 1.24720 0.98697 0.99465 0.98145 1.69657 1.23777 1.29556 1.35369 0.86196 0.76824 0.78403 0.84834 1.21725 1.21796 1.20781 1.21273 0.93044 0.98594 0.97138 1.21229 1.00201 0.91463 1.01177 0.87812 0.87574 0.86182 0.85181 0.84456 0.76548 0.91282 0.91761 0.91879 0.91789 0.90679 0.90971 0.96483 0.96103 0.78267 0.93569 0.85287 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 14.15 28.84 0.41 -0.60 16 2 C -0.12 -0.86 9.90 -37.62 -0.37 -1.23 16 3 C -0.04 -0.34 5.87 -104.95 -0.62 -0.95 16 4 C -0.12 -1.07 9.76 -39.27 -0.38 -1.45 16 5 C -0.06 -0.64 9.57 -39.25 -0.38 -1.02 16 6 C -0.13 -1.56 5.88 -104.91 -0.62 -2.18 16 7 C 0.56 7.87 7.76 -12.40 -0.10 7.77 16 8 O -0.54 -9.37 15.99 5.30 0.08 -9.29 16 9 N -0.71 -9.14 4.94 -53.71 -0.27 -9.40 16 10 C 0.15 2.07 2.81 -66.81 -0.19 1.88 16 11 H 0.09 1.53 7.26 -51.93 -0.38 1.15 16 12 C -0.13 -1.64 6.59 -25.61 -0.17 -1.81 16 13 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 14 C -0.11 -1.65 6.01 -24.74 -0.15 -1.80 16 15 C -0.10 -1.60 2.62 -88.96 -0.23 -1.83 16 16 H 0.08 1.20 7.74 -51.93 -0.40 0.80 16 17 C 0.16 3.27 5.54 -4.04 -0.02 3.25 16 18 N -0.73 -18.39 5.44 -59.91 -0.33 -18.72 16 19 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C -0.08 -0.80 9.52 -39.25 -0.37 -1.17 16 28 C -0.12 -1.08 9.38 -39.27 -0.37 -1.45 16 29 H 0.10 0.56 6.02 -52.48 -0.32 0.25 16 30 H 0.11 0.46 8.06 -52.49 -0.42 0.03 16 31 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.14 1.50 7.64 -52.48 -0.40 1.10 16 34 H 0.40 4.25 6.38 -40.82 -0.26 3.99 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.78 7.92 -51.93 -0.41 0.36 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.14 8.02 -51.93 -0.42 0.73 16 41 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 42 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.38 10.02 7.52 -40.82 -0.31 9.71 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.13 1.03 6.38 -52.48 -0.34 0.69 16 46 H 0.13 0.88 6.15 -52.48 -0.32 0.56 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -33.04 378.16 -9.98 -43.02 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.90 Total: 10.23 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.97 Total: -11.65 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.13 Total: -55.59 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.04 -9.98 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753892685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.934 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds