Wall clock time and date at job start Tue Mar 31 2020 11:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32676 * 1 3 3 C 1.47671 * 120.00077 * 2 1 4 4 C 1.39710 * 119.99668 * 180.02562 * 3 2 1 5 5 C 1.37598 * 120.00399 * 179.97438 * 4 3 2 6 6 C 1.39744 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.47682 * 120.00796 * 180.02562 * 6 5 4 8 8 O 1.21578 * 119.99969 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00060 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99608 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.01647 * 326.38203 * 10 9 7 12 12 C 1.53876 * 110.07668 * 87.80899 * 10 9 7 13 13 C 1.54268 * 106.59607 * 119.30446 * 12 10 9 14 14 C 1.54882 * 104.19992 * 23.60931 * 13 12 10 15 15 C 1.54268 * 110.02603 * 205.00004 * 10 9 7 16 16 H 1.08999 * 110.60474 * 335.78830 * 15 10 9 17 17 C 1.52997 * 110.48862 * 98.37951 * 15 10 9 18 18 N 1.46500 * 109.47458 * 181.22613 * 17 15 10 19 19 C 1.36941 * 120.00225 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99855 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99927 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00154 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99862 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46768 * 90.00242 * 23 21 19 25 25 H 1.48500 * 109.47131 * 209.99904 * 23 21 19 26 26 H 1.48499 * 109.47236 * 329.99746 * 23 21 19 27 27 C 1.39750 * 119.98790 * 0.27462 * 6 5 4 28 28 C 1.37598 * 119.99564 * 359.42540 * 27 6 5 29 29 H 1.08003 * 120.00270 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00212 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00270 * 179.97438 * 2 1 3 32 32 H 1.07998 * 119.99717 * 359.96296 * 4 3 2 33 33 H 1.08003 * 120.00504 * 180.02562 * 5 4 3 34 34 H 0.96995 * 120.00013 * 0.02562 * 9 7 6 35 35 H 1.08994 * 110.02975 * 238.58687 * 12 10 9 36 36 H 1.09000 * 110.03018 * 359.97370 * 12 10 9 37 37 H 1.09003 * 110.48471 * 264.93239 * 13 12 10 38 38 H 1.09004 * 110.48268 * 142.29006 * 13 12 10 39 39 H 1.08994 * 110.76048 * 203.74464 * 14 13 12 40 40 H 1.09004 * 110.75771 * 80.36858 * 14 13 12 41 41 H 1.09010 * 109.47031 * 301.22870 * 17 15 10 42 42 H 1.08998 * 109.47306 * 61.21988 * 17 15 10 43 43 H 0.96994 * 120.00058 * 0.02562 * 18 17 15 44 44 H 0.96998 * 119.99729 * 179.97438 * 22 21 19 45 45 H 1.08004 * 119.99574 * 179.70602 * 27 6 5 46 46 H 1.08003 * 119.99666 * 180.30031 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2788 -0.0005 5 6 4.1504 2.4703 -0.0011 6 6 3.4518 3.6806 -0.0005 7 6 4.1902 4.9596 -0.0017 8 8 5.4059 4.9596 -0.0036 9 7 3.5163 6.1268 -0.0017 10 6 4.2489 7.3955 -0.0034 11 1 5.1746 7.2925 0.5626 12 6 4.5592 7.8243 -1.4482 13 6 3.8642 9.1848 -1.6630 14 6 3.7141 9.7644 -0.2345 15 6 3.3761 8.5103 0.6094 16 1 2.3185 8.2630 0.5186 17 6 3.7478 8.7360 2.0763 18 7 2.8872 9.7770 2.6436 19 6 3.0366 10.1507 3.9526 20 1 3.7891 9.6784 4.5665 21 6 2.2215 11.1374 4.4899 22 7 1.3047 11.7135 3.7415 23 14 2.4257 11.6478 6.2752 24 1 3.4071 12.7588 6.3632 25 1 1.1174 12.0992 6.8137 26 1 2.9147 10.4912 7.0679 27 6 2.0543 3.6805 0.0064 28 6 1.3665 2.4887 0.0006 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8668 -0.9353 0.0004 32 1 4.0021 0.3434 -0.0004 33 1 5.2304 2.4702 -0.0019 34 1 2.5463 6.1267 -0.0005 35 1 5.6356 7.9295 -1.5834 36 1 4.1651 7.0882 -2.1489 37 1 2.8858 9.0450 -2.1227 38 1 4.4852 9.8377 -2.2763 39 1 2.8997 10.4877 -0.1947 40 1 4.6488 10.2146 0.0999 41 1 3.6113 7.8085 2.6326 42 1 4.7896 9.0495 2.1431 43 1 2.2111 10.2009 2.0924 44 1 0.7349 12.4027 4.1171 45 1 1.5143 4.6158 0.0116 46 1 0.2865 2.4886 0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753892685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:20 Heat of formation + Delta-G solvation = -12.366458 kcal Electronic energy + Delta-G solvation = -25145.740910 eV Core-core repulsion = 21613.315081 eV Total energy + Delta-G solvation = -3532.425829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45889 -40.01923 -38.92014 -36.34365 -35.24502 -34.67441 -33.31146 -32.05904 -30.73857 -30.20437 -28.56057 -26.38851 -25.16960 -23.87071 -23.69377 -22.26678 -21.35942 -20.97111 -20.49184 -19.40146 -18.67606 -17.78338 -17.09440 -16.63512 -16.30095 -16.14218 -15.82260 -15.68916 -15.41381 -15.19643 -15.07594 -14.80182 -14.53821 -14.20897 -14.15366 -13.84909 -13.47703 -13.21522 -13.18359 -12.90434 -12.78263 -12.48570 -12.24970 -12.19027 -11.97122 -11.88085 -11.82226 -11.63541 -11.60434 -11.43888 -11.33106 -11.05043 -10.93840 -10.13596 -10.03281 -9.21118 -9.01290 -7.96711 -5.25150 -0.45643 0.39026 1.27880 1.46273 1.47631 1.56165 2.05242 2.11896 2.54499 2.94913 3.36184 3.41681 3.62820 3.66758 3.76669 3.86671 3.89946 3.94614 4.15153 4.32638 4.33568 4.38746 4.44887 4.46874 4.53845 4.57395 4.62924 4.72729 4.75447 4.92961 4.97003 4.99800 5.02126 5.08422 5.16898 5.23079 5.23679 5.31547 5.32574 5.35334 5.45614 5.49616 5.58481 5.65225 5.80736 5.91041 6.25889 6.48605 7.14983 7.32947 8.06936 8.33323 9.26474 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.002855 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.703585 B = 9803.338694 C =11129.669711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C -0.035 4.035 4 C -0.122 4.122 5 C -0.072 4.072 6 C -0.157 4.157 7 C 0.555 3.445 8 O -0.581 6.581 9 N -0.706 5.706 10 C 0.152 3.848 11 H 0.070 0.930 12 C -0.124 4.124 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.090 4.090 16 H 0.086 0.914 17 C 0.162 3.838 18 N -0.738 5.738 19 C -0.249 4.249 20 H 0.068 0.932 21 C -0.070 4.070 22 N -0.965 5.965 23 Si 0.971 3.029 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.273 1.273 27 C -0.081 4.081 28 C -0.130 4.130 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.152 0.848 33 H 0.128 0.872 34 H 0.410 0.590 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.009 0.991 42 H 0.013 0.987 43 H 0.377 0.623 44 H 0.253 0.747 45 H 0.145 0.855 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -22.251 -14.138 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.036 4.036 4 C -0.140 4.140 5 C -0.091 4.091 6 C -0.160 4.160 7 C 0.344 3.656 8 O -0.462 6.462 9 N -0.357 5.357 10 C 0.047 3.953 11 H 0.088 0.912 12 C -0.162 4.162 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.110 4.110 16 H 0.105 0.895 17 C 0.035 3.965 18 N -0.381 5.381 19 C -0.380 4.380 20 H 0.086 0.914 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.800 3.200 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.198 1.198 27 C -0.100 4.100 28 C -0.148 4.148 29 H 0.126 0.874 30 H 0.143 0.857 31 H 0.153 0.847 32 H 0.170 0.830 33 H 0.146 0.854 34 H 0.248 0.752 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.027 0.973 42 H 0.031 0.969 43 H 0.210 0.790 44 H 0.061 0.939 45 H 0.162 0.838 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.460 -22.238 -13.965 26.264 hybrid contribution -0.347 0.808 1.092 1.402 sum -0.808 -21.430 -12.874 25.013 Atomic orbital electron populations 1.24765 0.95427 1.03706 0.95489 1.21954 0.95792 0.95370 1.03055 1.19664 0.93501 0.94322 0.96084 1.21465 0.93622 0.98281 1.00644 1.21283 1.00695 0.91423 0.95664 1.19987 0.94572 0.92791 1.08669 1.18643 0.86945 0.84701 0.75340 1.90735 1.15157 1.88215 1.52142 1.46018 1.10823 1.04877 1.73972 1.21544 0.94905 0.81794 0.97057 0.91157 1.22476 1.01190 0.97816 0.94736 1.22319 1.01323 0.95325 0.95866 1.22393 1.01381 0.96070 0.94982 1.22274 0.99851 0.95218 0.93617 0.89547 1.20758 0.93062 0.90374 0.92261 1.42449 1.41508 1.44262 1.09884 1.19578 1.14096 1.15455 0.88905 0.91356 1.25507 0.98760 0.99828 1.02211 1.69796 1.24652 1.30138 1.37004 0.85179 0.76580 0.78101 0.80135 1.21371 1.21799 1.19801 1.21452 0.92165 0.99870 0.96468 1.21537 1.01405 0.91066 1.00743 0.87399 0.85737 0.84728 0.83003 0.85427 0.75160 0.91334 0.90729 0.90270 0.90222 0.91863 0.92298 0.97322 0.96868 0.78995 0.93866 0.83777 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 14.15 66.65 0.94 -0.39 16 2 C -0.14 -1.60 9.90 23.59 0.23 -1.37 16 3 C -0.04 -0.56 5.87 -20.07 -0.12 -0.67 16 4 C -0.12 -2.08 9.76 22.47 0.22 -1.86 16 5 C -0.07 -1.59 9.57 22.48 0.22 -1.38 16 6 C -0.16 -3.73 5.88 -20.05 -0.12 -3.85 16 7 C 0.55 16.03 7.76 86.74 0.67 16.70 16 8 O -0.58 -21.06 15.99 -3.96 -0.06 -21.12 16 9 N -0.71 -17.95 4.94 -442.10 -2.18 -20.13 16 10 C 0.15 4.32 2.81 45.72 0.13 4.45 16 11 H 0.07 2.37 7.26 -2.39 -0.02 2.35 16 12 C -0.12 -2.95 6.59 31.32 0.21 -2.75 16 13 C -0.11 -2.47 6.83 31.67 0.22 -2.25 16 14 C -0.11 -3.27 6.01 31.89 0.19 -3.08 16 15 C -0.09 -2.84 2.62 -9.72 -0.03 -2.86 16 16 H 0.09 2.60 7.74 -2.39 -0.02 2.58 16 17 C 0.16 6.74 5.54 86.38 0.48 7.22 16 18 N -0.74 -37.80 5.44 -343.45 -1.87 -39.67 16 19 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 23 Si 0.97 46.59 29.55 68.60 2.03 48.61 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 C -0.08 -1.49 9.52 22.48 0.21 -1.28 16 28 C -0.13 -2.03 9.38 22.47 0.21 -1.82 16 29 H 0.11 0.81 6.02 -2.91 -0.02 0.79 16 30 H 0.12 0.61 8.06 -2.91 -0.02 0.59 16 31 H 0.13 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.13 2.97 7.64 -2.91 -0.02 2.95 16 34 H 0.41 8.36 6.38 -92.71 -0.59 7.77 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.66 7.92 -2.39 -0.02 1.65 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 1.89 8.02 -2.38 -0.02 1.87 16 41 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.01 0.58 8.10 -2.39 -0.02 0.56 16 43 H 0.38 20.06 7.52 -92.71 -0.70 19.37 16 44 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 45 H 0.14 2.06 6.38 -2.91 -0.02 2.05 16 46 H 0.15 1.62 6.15 -2.91 -0.02 1.60 16 Total: -1.00 -71.73 378.16 2.87 -68.85 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.30 Total: 34.04 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.98 Total: -12.15 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -3.77 Total: -118.23 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.12 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -71.73 2.87 -68.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753892685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.485 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds