Wall clock time and date at job start Tue Mar 31 2020 11:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32678 * 1 3 3 C 1.47666 * 119.99953 * 2 1 4 4 C 1.39710 * 119.99983 * 179.97438 * 3 2 1 5 5 C 1.37606 * 120.00992 * 179.97438 * 4 3 2 6 6 C 1.39750 * 119.99102 * 359.97438 * 5 4 3 7 7 C 1.47681 * 120.00097 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00094 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00352 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00608 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.05464 * 326.41981 * 10 9 7 12 12 C 1.54266 * 110.03380 * 87.83312 * 10 9 7 13 13 C 1.54893 * 104.19500 * 142.89881 * 12 10 9 14 14 C 1.54887 * 102.74533 * 322.05712 * 13 12 10 15 15 C 1.53872 * 110.03343 * 205.00362 * 10 9 7 16 16 H 1.09003 * 110.03622 * 121.42679 * 15 10 9 17 17 C 1.53001 * 110.07640 * 0.02562 * 15 10 9 18 18 N 1.46492 * 109.47508 * 176.35706 * 17 15 10 19 19 C 1.36939 * 120.00262 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99739 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00021 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00144 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47286 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47135 * 119.99772 * 23 21 19 26 26 H 1.48507 * 109.47548 * 239.99797 * 23 21 19 27 27 C 1.39739 * 119.99238 * 0.24827 * 6 5 4 28 28 C 1.37604 * 119.99811 * 359.51424 * 27 6 5 29 29 H 1.08004 * 120.00206 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00275 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00316 * 179.97438 * 2 1 3 32 32 H 1.08000 * 119.99289 * 359.97438 * 4 3 2 33 33 H 1.07993 * 120.00622 * 180.02562 * 5 4 3 34 34 H 0.97007 * 119.99828 * 0.02562 * 9 7 6 35 35 H 1.09002 * 110.48438 * 261.57499 * 12 10 9 36 36 H 1.08998 * 110.48431 * 24.08327 * 12 10 9 37 37 H 1.09001 * 110.75228 * 203.74448 * 13 12 10 38 38 H 1.09000 * 110.75571 * 80.37081 * 13 12 10 39 39 H 1.09001 * 110.48816 * 279.26329 * 14 13 12 40 40 H 1.09004 * 110.48531 * 156.62545 * 14 13 12 41 41 H 1.09008 * 109.46971 * 296.35838 * 17 15 10 42 42 H 1.09000 * 109.47116 * 56.35447 * 17 15 10 43 43 H 0.96996 * 119.99868 * 0.02562 * 18 17 15 44 44 H 0.96999 * 120.00215 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.00238 * 179.72553 * 27 6 5 46 46 H 1.08003 * 119.99964 * 180.23319 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4622 1.2788 0.0005 5 6 4.1504 2.4704 0.0000 6 6 3.4517 3.6807 -0.0016 7 6 4.1901 4.9597 -0.0016 8 8 5.4059 4.9597 0.0003 9 7 3.5163 6.1269 -0.0037 10 6 4.2487 7.3956 -0.0043 11 1 5.1737 7.2935 0.5633 12 6 4.5620 7.8243 -1.4527 13 6 4.4039 9.3650 -1.4354 14 6 3.1909 9.5735 -0.4952 15 6 3.3769 8.5078 0.6045 16 1 3.8787 8.9454 1.4675 17 6 2.0179 7.9413 1.0208 18 7 1.2322 8.9893 1.6768 19 6 -0.0276 8.7136 2.1374 20 1 -0.4421 7.7235 2.0166 21 6 -0.7724 9.7067 2.7585 22 7 -0.2679 10.9136 2.9043 23 14 -2.4911 9.3307 3.3861 24 1 -2.8227 7.9116 3.1012 25 1 -2.5457 9.5667 4.8512 26 1 -3.4712 10.2149 2.7055 27 6 2.0543 3.6805 0.0025 28 6 1.3665 2.4888 -0.0019 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8668 -0.9352 0.0004 32 1 4.0021 0.3435 0.0014 33 1 5.2304 2.4704 0.0000 34 1 2.5462 6.1269 -0.0048 35 1 5.5822 7.5484 -1.7199 36 1 3.8519 7.3735 -2.1460 37 1 4.1874 9.7423 -2.4349 38 1 5.2957 9.8403 -1.0267 39 1 2.2578 9.4073 -1.0337 40 1 3.2102 10.5744 -0.0638 41 1 1.4859 7.5873 0.1377 42 1 2.1664 7.1119 1.7122 43 1 1.6039 9.8787 1.7842 44 1 -0.7882 11.6075 3.3386 45 1 1.5142 4.6158 0.0058 46 1 0.2864 2.4886 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753892686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:24 Heat of formation + Delta-G solvation = 14.471201 kcal Electronic energy + Delta-G solvation = -25607.773261 eV Core-core repulsion = 22076.511200 eV Total energy + Delta-G solvation = -3531.262061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45000 -39.10920 -37.75890 -34.46073 -34.38263 -33.62763 -31.44077 -31.22172 -29.91924 -28.57785 -27.41819 -24.67592 -24.19973 -22.91089 -22.47128 -21.18828 -20.46547 -19.82660 -19.03967 -18.18406 -17.08545 -16.66411 -15.77778 -15.41985 -15.17216 -14.97083 -14.78305 -14.52151 -14.39901 -13.87102 -13.64882 -13.48744 -13.42545 -13.01374 -13.00824 -12.88617 -12.48096 -12.17761 -11.65437 -11.55418 -11.33021 -11.10486 -10.90565 -10.86015 -10.80276 -10.61303 -10.48801 -10.39717 -10.29203 -9.97339 -9.87260 -9.72102 -9.21335 -8.99776 -8.87459 -8.45848 -6.97200 -5.80836 -3.09886 0.36778 1.20556 2.01668 3.01273 3.24527 3.40037 3.45365 3.47838 3.81678 4.40060 4.48969 4.52627 4.66041 4.72800 4.82861 4.84126 4.94101 5.10160 5.13068 5.21015 5.43232 5.46013 5.51552 5.56493 5.65465 5.66917 5.76553 5.79411 5.86237 5.92860 5.97688 6.03823 6.05863 6.16024 6.17466 6.20677 6.26573 6.31354 6.43547 6.47162 6.57676 6.59879 6.67104 6.72560 6.80472 7.59878 7.64802 8.27380 8.37650 9.49289 10.06424 10.41267 11.41944 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.003983 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.153744 B = 7028.696105 C = 9728.064029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.038 4.038 4 C -0.120 4.120 5 C -0.059 4.059 6 C -0.133 4.133 7 C 0.556 3.444 8 O -0.545 6.545 9 N -0.715 5.715 10 C 0.149 3.851 11 H 0.090 0.910 12 C -0.132 4.132 13 C -0.124 4.124 14 C -0.111 4.111 15 C -0.108 4.108 16 H 0.083 0.917 17 C 0.157 3.843 18 N -0.728 5.728 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.080 4.080 28 C -0.122 4.122 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.406 0.594 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.016 0.984 42 H 0.021 0.979 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.130 0.870 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 -17.068 -9.439 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.038 4.038 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.136 4.136 7 C 0.343 3.657 8 O -0.424 6.424 9 N -0.368 5.368 10 C 0.043 3.957 11 H 0.108 0.892 12 C -0.170 4.170 13 C -0.162 4.162 14 C -0.149 4.149 15 C -0.128 4.128 16 H 0.101 0.899 17 C 0.029 3.971 18 N -0.372 5.372 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.099 4.099 28 C -0.139 4.139 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.246 0.754 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.033 0.967 42 H 0.039 0.961 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.148 0.852 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.616 -17.127 -9.385 20.962 hybrid contribution -1.417 0.150 0.507 1.513 sum 6.198 -16.978 -8.878 20.136 Atomic orbital electron populations 1.24499 0.95710 1.02590 0.97967 1.21825 0.95272 0.95698 1.01451 1.19318 0.93418 0.93246 0.97838 1.21213 0.93151 0.98131 1.01344 1.21190 1.00770 0.90715 0.95146 1.20068 0.93668 0.93832 1.06002 1.18268 0.87241 0.83910 0.76251 1.90743 1.13416 1.87748 1.50496 1.46341 1.11099 1.05331 1.74054 1.21677 0.95491 0.82010 0.96475 0.89170 1.22765 1.01662 0.96217 0.96385 1.22490 0.98811 0.95108 0.99813 1.22356 0.97934 0.98882 0.95735 1.22225 0.96903 0.94951 0.98679 0.89902 1.20680 0.89133 0.92595 0.94675 1.42320 1.15366 1.09942 1.69575 1.19245 0.91297 0.96105 1.30622 0.91209 1.24732 0.98676 0.95760 1.01637 1.69667 1.37437 1.02068 1.48784 0.86139 0.84480 0.77319 0.78363 1.20577 1.21844 1.21836 1.21324 0.93077 0.98762 0.96713 1.21255 1.00312 0.91410 1.00951 0.87727 0.87601 0.86228 0.85250 0.84539 0.75422 0.91474 0.91343 0.91618 0.91525 0.90987 0.91145 0.96686 0.96133 0.78110 0.93516 0.85188 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 14.15 28.84 0.41 -0.80 16 2 C -0.12 -0.99 9.90 -37.62 -0.37 -1.36 16 3 C -0.04 -0.38 5.87 -104.95 -0.62 -0.99 16 4 C -0.12 -1.18 9.76 -39.26 -0.38 -1.57 16 5 C -0.06 -0.69 9.58 -39.25 -0.38 -1.07 16 6 C -0.13 -1.72 5.88 -104.92 -0.62 -2.34 16 7 C 0.56 8.34 7.76 -12.40 -0.10 8.24 16 8 O -0.55 -9.60 15.99 5.29 0.08 -9.51 16 9 N -0.71 -10.11 4.36 -53.72 -0.23 -10.34 16 10 C 0.15 2.14 3.23 -66.82 -0.22 1.92 16 11 H 0.09 1.38 7.56 -51.93 -0.39 0.99 16 12 C -0.13 -1.69 6.53 -25.07 -0.16 -1.85 16 13 C -0.12 -1.52 6.91 -24.74 -0.17 -1.69 16 14 C -0.11 -1.66 6.01 -25.07 -0.15 -1.81 16 15 C -0.11 -1.72 2.98 -89.50 -0.27 -1.99 16 16 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 17 C 0.16 2.98 4.18 -4.05 -0.02 2.97 16 18 N -0.73 -17.75 5.43 -59.91 -0.33 -18.07 16 19 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 20 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 23 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C -0.08 -0.93 9.52 -39.25 -0.37 -1.30 16 28 C -0.12 -1.27 9.38 -39.26 -0.37 -1.64 16 29 H 0.10 0.72 6.02 -52.48 -0.32 0.41 16 30 H 0.11 0.57 8.06 -52.49 -0.42 0.14 16 31 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.14 1.55 7.64 -52.49 -0.40 1.15 16 34 H 0.41 5.47 3.90 -40.82 -0.16 5.31 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.16 7.78 -51.93 -0.40 0.75 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.28 7.06 -51.92 -0.37 -0.08 16 42 H 0.02 0.41 7.51 -51.93 -0.39 0.02 16 43 H 0.39 9.94 7.51 -40.82 -0.31 9.64 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.13 1.40 6.38 -52.49 -0.34 1.07 16 46 H 0.13 1.14 6.15 -52.48 -0.32 0.82 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -31.81 373.43 -9.91 -41.72 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -6.74 Total: 13.00 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -4.03 Total: -12.43 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.17 Total: -55.39 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.81 -9.91 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753892686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.189 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds