Wall clock time and date at job start Tue Mar 31 2020 11:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32678 * 1 3 3 C 1.47666 * 119.99953 * 2 1 4 4 C 1.39710 * 119.99983 * 179.97438 * 3 2 1 5 5 C 1.37606 * 120.00992 * 179.97438 * 4 3 2 6 6 C 1.39750 * 119.99102 * 359.97438 * 5 4 3 7 7 C 1.47681 * 120.00097 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00094 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00352 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00608 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.05464 * 326.41981 * 10 9 7 12 12 C 1.54266 * 110.03380 * 87.83312 * 10 9 7 13 13 C 1.54893 * 104.19500 * 142.89881 * 12 10 9 14 14 C 1.54887 * 102.74533 * 322.05712 * 13 12 10 15 15 C 1.53872 * 110.03343 * 205.00362 * 10 9 7 16 16 H 1.09003 * 110.03622 * 121.42679 * 15 10 9 17 17 C 1.53001 * 110.07640 * 0.02562 * 15 10 9 18 18 N 1.46492 * 109.47508 * 176.35706 * 17 15 10 19 19 C 1.36939 * 120.00262 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99739 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00021 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00144 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47286 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47135 * 119.99772 * 23 21 19 26 26 H 1.48507 * 109.47548 * 239.99797 * 23 21 19 27 27 C 1.39739 * 119.99238 * 0.24827 * 6 5 4 28 28 C 1.37604 * 119.99811 * 359.51424 * 27 6 5 29 29 H 1.08004 * 120.00206 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00275 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00316 * 179.97438 * 2 1 3 32 32 H 1.08000 * 119.99289 * 359.97438 * 4 3 2 33 33 H 1.07993 * 120.00622 * 180.02562 * 5 4 3 34 34 H 0.97007 * 119.99828 * 0.02562 * 9 7 6 35 35 H 1.09002 * 110.48438 * 261.57499 * 12 10 9 36 36 H 1.08998 * 110.48431 * 24.08327 * 12 10 9 37 37 H 1.09001 * 110.75228 * 203.74448 * 13 12 10 38 38 H 1.09000 * 110.75571 * 80.37081 * 13 12 10 39 39 H 1.09001 * 110.48816 * 279.26329 * 14 13 12 40 40 H 1.09004 * 110.48531 * 156.62545 * 14 13 12 41 41 H 1.09008 * 109.46971 * 296.35838 * 17 15 10 42 42 H 1.09000 * 109.47116 * 56.35447 * 17 15 10 43 43 H 0.96996 * 119.99868 * 0.02562 * 18 17 15 44 44 H 0.96999 * 120.00215 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.00238 * 179.72553 * 27 6 5 46 46 H 1.08003 * 119.99964 * 180.23319 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4622 1.2788 0.0005 5 6 4.1504 2.4704 0.0000 6 6 3.4517 3.6807 -0.0016 7 6 4.1901 4.9597 -0.0016 8 8 5.4059 4.9597 0.0003 9 7 3.5163 6.1269 -0.0037 10 6 4.2487 7.3956 -0.0043 11 1 5.1737 7.2935 0.5633 12 6 4.5620 7.8243 -1.4527 13 6 4.4039 9.3650 -1.4354 14 6 3.1909 9.5735 -0.4952 15 6 3.3769 8.5078 0.6045 16 1 3.8787 8.9454 1.4675 17 6 2.0179 7.9413 1.0208 18 7 1.2322 8.9893 1.6768 19 6 -0.0276 8.7136 2.1374 20 1 -0.4421 7.7235 2.0166 21 6 -0.7724 9.7067 2.7585 22 7 -0.2679 10.9136 2.9043 23 14 -2.4911 9.3307 3.3861 24 1 -2.8227 7.9116 3.1012 25 1 -2.5457 9.5667 4.8512 26 1 -3.4712 10.2149 2.7055 27 6 2.0543 3.6805 0.0025 28 6 1.3665 2.4888 -0.0019 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8668 -0.9352 0.0004 32 1 4.0021 0.3435 0.0014 33 1 5.2304 2.4704 0.0000 34 1 2.5462 6.1269 -0.0048 35 1 5.5822 7.5484 -1.7199 36 1 3.8519 7.3735 -2.1460 37 1 4.1874 9.7423 -2.4349 38 1 5.2957 9.8403 -1.0267 39 1 2.2578 9.4073 -1.0337 40 1 3.2102 10.5744 -0.0638 41 1 1.4859 7.5873 0.1377 42 1 2.1664 7.1119 1.7122 43 1 1.6039 9.8787 1.7842 44 1 -0.7882 11.6075 3.3386 45 1 1.5142 4.6158 0.0058 46 1 0.2864 2.4886 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753892686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:24 Heat of formation + Delta-G solvation = -3.127530 kcal Electronic energy + Delta-G solvation = -25608.536399 eV Core-core repulsion = 22076.511200 eV Total energy + Delta-G solvation = -3532.025199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55309 -40.09178 -38.93486 -36.23319 -35.25611 -34.69228 -33.30700 -32.06833 -30.74638 -30.16933 -28.51448 -26.37744 -25.13296 -24.27591 -23.66710 -22.18334 -21.57460 -20.58008 -20.38433 -19.47365 -18.80339 -17.63997 -16.82154 -16.66842 -16.44587 -16.11309 -16.01031 -15.74979 -15.36073 -15.26081 -15.07831 -14.81399 -14.53027 -14.25932 -14.15185 -13.83834 -13.48880 -13.23035 -13.13430 -12.87909 -12.78592 -12.37369 -12.24880 -12.12384 -11.94751 -11.83486 -11.79147 -11.72799 -11.54991 -11.46235 -11.33576 -11.05353 -10.94460 -10.12114 -10.04259 -9.21861 -8.99916 -7.94454 -5.23289 -0.46480 0.37935 1.27171 1.48214 1.48838 1.58484 2.05063 2.12545 2.56146 2.94112 3.38551 3.42685 3.64353 3.66913 3.75376 3.83685 3.88806 3.92965 4.16835 4.31435 4.32631 4.37090 4.44609 4.46980 4.49746 4.53217 4.64683 4.73508 4.75282 4.89620 4.92503 4.96978 5.01400 5.06462 5.20481 5.23190 5.24760 5.30793 5.33194 5.34920 5.47587 5.49860 5.53928 5.64145 5.80051 5.91015 6.27117 6.45284 7.11915 7.34410 8.08964 8.32694 9.29300 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.003983 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.153744 B = 7028.696105 C = 9728.064029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.142 4.142 3 C -0.034 4.034 4 C -0.120 4.120 5 C -0.068 4.068 6 C -0.157 4.157 7 C 0.555 3.445 8 O -0.578 6.578 9 N -0.712 5.712 10 C 0.152 3.848 11 H 0.081 0.919 12 C -0.125 4.125 13 C -0.112 4.112 14 C -0.109 4.109 15 C -0.101 4.101 16 H 0.073 0.927 17 C 0.160 3.840 18 N -0.740 5.740 19 C -0.243 4.243 20 H 0.078 0.922 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.293 1.293 27 C -0.085 4.085 28 C -0.131 4.131 29 H 0.104 0.896 30 H 0.126 0.874 31 H 0.139 0.861 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.409 0.591 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.018 0.982 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.132 0.868 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.060 -19.329 -10.312 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C -0.035 4.035 4 C -0.138 4.138 5 C -0.087 4.087 6 C -0.160 4.160 7 C 0.344 3.656 8 O -0.459 6.459 9 N -0.365 5.365 10 C 0.047 3.953 11 H 0.099 0.901 12 C -0.163 4.163 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.120 4.120 16 H 0.091 0.909 17 C 0.033 3.967 18 N -0.382 5.382 19 C -0.375 4.375 20 H 0.096 0.904 21 C -0.266 4.266 22 N -0.619 5.619 23 Si 0.800 3.200 24 H -0.188 1.188 25 H -0.224 1.224 26 H -0.221 1.221 27 C -0.104 4.104 28 C -0.149 4.149 29 H 0.122 0.878 30 H 0.144 0.856 31 H 0.157 0.843 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.249 0.751 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.036 0.964 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.150 0.850 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.753 -19.427 -10.281 22.994 hybrid contribution -1.177 0.729 0.770 1.584 sum 5.577 -18.698 -9.511 21.707 Atomic orbital electron populations 1.24765 0.95578 1.03603 0.95680 1.21965 0.95689 0.95396 1.02875 1.19656 0.93668 0.94076 0.96073 1.21496 0.93405 0.98441 1.00408 1.21295 1.00800 0.91124 0.95458 1.19999 0.94248 0.93176 1.08610 1.18612 0.86970 0.84639 0.75378 1.90713 1.14747 1.88219 1.52258 1.46306 1.11170 1.05207 1.73801 1.21611 0.94633 0.81595 0.97460 0.90115 1.22711 1.02017 0.96579 0.95002 1.22443 0.97798 0.94682 1.00058 1.22291 0.98791 0.97841 0.95770 1.22121 0.95271 0.95765 0.98863 0.90899 1.20795 0.90211 0.91282 0.94420 1.42511 1.15202 1.10596 1.69936 1.19673 0.92199 0.96269 1.29367 0.90363 1.25532 1.02502 0.95776 1.02784 1.69820 1.38836 1.02985 1.50301 0.85117 0.79988 0.77822 0.77103 1.18780 1.22371 1.22067 1.21390 0.92574 0.99539 0.96866 1.21509 1.01273 0.91226 1.00857 0.87801 0.85597 0.84321 0.82564 0.84898 0.75085 0.90945 0.91033 0.89843 0.90419 0.92129 0.92149 0.95415 0.96411 0.79322 0.94064 0.84988 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 14.15 66.65 0.94 -0.80 16 2 C -0.14 -1.82 9.90 23.59 0.23 -1.59 16 3 C -0.03 -0.61 5.87 -20.07 -0.12 -0.73 16 4 C -0.12 -2.16 9.76 22.48 0.22 -1.94 16 5 C -0.07 -1.56 9.58 22.49 0.22 -1.35 16 6 C -0.16 -4.09 5.88 -20.05 -0.12 -4.21 16 7 C 0.55 16.87 7.76 86.74 0.67 17.55 16 8 O -0.58 -20.76 15.99 -3.97 -0.06 -20.83 16 9 N -0.71 -20.17 4.36 -442.13 -1.93 -22.09 16 10 C 0.15 4.36 3.23 45.72 0.15 4.50 16 11 H 0.08 2.49 7.56 -2.39 -0.02 2.48 16 12 C -0.12 -3.05 6.53 31.67 0.21 -2.84 16 13 C -0.11 -2.57 6.91 31.89 0.22 -2.35 16 14 C -0.11 -3.22 6.01 31.67 0.19 -3.03 16 15 C -0.10 -3.22 2.98 -10.07 -0.03 -3.25 16 16 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 17 C 0.16 6.06 4.18 86.38 0.36 6.43 16 18 N -0.74 -36.44 5.43 -343.46 -1.87 -38.30 16 19 C -0.24 -13.20 9.99 84.03 0.84 -12.36 16 20 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 23 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 C -0.08 -1.93 9.52 22.48 0.21 -1.71 16 28 C -0.13 -2.53 9.38 22.48 0.21 -2.32 16 29 H 0.10 1.14 6.02 -2.91 -0.02 1.12 16 30 H 0.13 0.88 8.06 -2.91 -0.02 0.85 16 31 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.13 3.07 7.64 -2.91 -0.02 3.05 16 34 H 0.41 10.95 3.90 -92.70 -0.36 10.59 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.72 8.05 -2.39 -0.02 1.70 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.93 7.78 -2.39 -0.02 1.91 16 40 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.03 1.01 7.06 -2.38 -0.02 0.99 16 42 H 0.02 0.70 7.51 -2.39 -0.02 0.68 16 43 H 0.37 19.81 7.51 -92.71 -0.70 19.12 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.13 2.81 6.38 -2.91 -0.02 2.79 16 46 H 0.15 2.27 6.15 -2.91 -0.02 2.25 16 Total: -1.00 -68.28 373.43 3.27 -65.01 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -0.06 Total: 40.92 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 4.88 Total: -13.69 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -3.51 Total: -118.67 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.06 Total: -20.83 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.28 3.27 -65.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753892686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.881 kcal (2) G-P(sol) polarization free energy of solvation -68.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds