Wall clock time and date at job start Tue Mar 31 2020 11:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32681 * 1 3 3 C 1.47663 * 120.00045 * 2 1 4 4 C 1.39714 * 119.99612 * 179.97438 * 3 2 1 5 5 C 1.37604 * 120.00124 * 179.97438 * 4 3 2 6 6 C 1.39745 * 119.99945 * 0.02732 * 5 4 3 7 7 C 1.47681 * 120.00429 * 179.97438 * 6 5 4 8 8 O 1.21569 * 120.00239 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99780 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99565 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.81794 * 31.65839 * 10 9 7 12 12 C 1.54895 * 110.75342 * 268.32017 * 10 9 7 13 13 C 1.54259 * 104.19373 * 203.74566 * 12 10 9 14 14 C 1.53871 * 106.60160 * 23.61345 * 13 12 10 15 15 C 1.54260 * 106.59937 * 359.97438 * 14 13 12 16 16 H 1.09008 * 110.48690 * 95.20309 * 15 14 13 17 17 C 1.53001 * 110.48860 * 217.71147 * 15 14 13 18 18 N 1.46490 * 109.47264 * 293.54505 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.39745 * 119.98904 * 0.24863 * 6 5 4 28 28 C 1.37597 * 119.99488 * 359.46882 * 27 6 5 29 29 H 1.08003 * 119.99874 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00175 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00394 * 179.97438 * 2 1 3 32 32 H 1.08000 * 119.99878 * 0.02701 * 4 3 2 33 33 H 1.07996 * 120.00004 * 180.02562 * 5 4 3 34 34 H 0.96999 * 120.00166 * 359.97438 * 9 7 6 35 35 H 1.09004 * 110.48155 * 85.06826 * 12 10 9 36 36 H 1.09001 * 110.59996 * 322.48082 * 12 10 9 37 37 H 1.09005 * 110.03341 * 264.32198 * 13 12 10 38 38 H 1.09004 * 110.07194 * 142.92286 * 13 12 10 39 39 H 1.09000 * 110.03289 * 240.71026 * 14 13 12 40 40 H 1.08996 * 110.03704 * 119.28700 * 14 13 12 41 41 H 1.09003 * 109.46836 * 173.54212 * 17 15 14 42 42 H 1.08999 * 109.47071 * 53.55252 * 17 15 14 43 43 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 44 44 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 45 45 H 1.07995 * 119.99916 * 179.72661 * 27 6 5 46 46 H 1.07999 * 119.99787 * 180.29395 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4623 1.2787 0.0005 5 6 4.1504 2.4703 0.0000 6 6 3.4518 3.6806 -0.0005 7 6 4.1902 4.9595 -0.0005 8 8 5.4059 4.9596 0.0004 9 7 3.5163 6.1268 -0.0005 10 6 4.2489 7.3955 0.0001 11 1 5.1938 7.2974 -0.5343 12 6 4.4860 7.8917 1.4481 13 6 4.6752 9.4154 1.2996 14 6 3.9763 9.8196 -0.0103 15 6 3.3873 8.5273 -0.6124 16 1 2.3427 8.4130 -0.3226 17 6 3.5206 8.5374 -2.1366 18 7 2.6746 9.5955 -2.6938 19 6 2.6313 9.7959 -4.0477 20 1 3.2206 9.1736 -4.7048 21 6 1.8300 10.7990 -4.5757 22 7 1.1122 11.5578 -3.7749 23 14 1.7705 11.0718 -6.4227 24 1 0.8478 12.1946 -6.7278 25 1 3.1311 11.4013 -6.9184 26 1 1.2860 9.8370 -7.0902 27 6 2.0543 3.6805 0.0048 28 6 1.3666 2.4887 -0.0006 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8669 -0.9353 0.0004 32 1 4.0022 0.3433 0.0005 33 1 5.2304 2.4702 0.0000 34 1 2.5463 6.1268 -0.0008 35 1 5.3832 7.4347 1.8658 36 1 3.6211 7.6739 2.0747 37 1 5.7370 9.6564 1.2461 38 1 4.2172 9.9332 2.1424 39 1 4.6988 10.2567 -0.6995 40 1 3.1786 10.5328 0.1968 41 1 3.2061 7.5729 -2.5352 42 1 4.5598 8.7216 -2.4091 43 1 2.1455 10.1548 -2.1037 44 1 1.1428 11.4158 -2.8158 45 1 1.5143 4.6157 0.0089 46 1 0.2866 2.4886 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753892688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:33 Heat of formation + Delta-G solvation = 5.729731 kcal Electronic energy + Delta-G solvation = -25211.163776 eV Core-core repulsion = 21679.522656 eV Total energy + Delta-G solvation = -3531.641120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45690 -39.10932 -37.84855 -34.75055 -34.54126 -33.73294 -31.44824 -31.33885 -30.01782 -28.38171 -27.55549 -24.64491 -23.94402 -22.99159 -22.40151 -21.23821 -20.48765 -20.03180 -19.53635 -18.05986 -17.20453 -16.84982 -16.23479 -15.41875 -15.29895 -15.02433 -14.87356 -14.53297 -14.17000 -13.84418 -13.68566 -13.58141 -13.43704 -13.30311 -13.16601 -13.02268 -12.59211 -12.26664 -12.02569 -11.65671 -11.23729 -11.14977 -11.02397 -10.75733 -10.72791 -10.67578 -10.53041 -10.43800 -10.15349 -9.99081 -9.95515 -9.32105 -9.21142 -8.98628 -8.86787 -8.55958 -6.98899 -6.09553 -3.08654 0.26591 1.09722 1.92121 2.91123 3.10314 3.52633 3.56173 3.71224 3.73483 4.30257 4.37940 4.51616 4.60034 4.66730 4.74717 4.79138 4.84946 4.97279 5.01831 5.10291 5.33334 5.38182 5.48507 5.51682 5.57827 5.62451 5.67306 5.68486 5.75091 5.85811 5.86657 5.93853 5.99428 6.04175 6.07256 6.16032 6.21177 6.23558 6.37046 6.39659 6.49081 6.53158 6.58233 6.71127 6.83656 7.47157 7.82598 8.16513 8.77136 9.24494 10.10825 10.26127 11.39207 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.003029 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.898967 B = 9242.614658 C =10921.754194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.038 4.038 4 C -0.119 4.119 5 C -0.059 4.059 6 C -0.132 4.132 7 C 0.558 3.442 8 O -0.539 6.539 9 N -0.712 5.712 10 C 0.146 3.854 11 H 0.100 0.900 12 C -0.132 4.132 13 C -0.122 4.122 14 C -0.112 4.112 15 C -0.104 4.104 16 H 0.076 0.924 17 C 0.167 3.833 18 N -0.742 5.742 19 C -0.330 4.330 20 H 0.063 0.937 21 C -0.046 4.046 22 N -0.945 5.945 23 Si 1.079 2.921 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.295 1.295 27 C -0.081 4.081 28 C -0.123 4.123 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.018 0.982 42 H 0.021 0.979 43 H 0.367 0.633 44 H 0.254 0.746 45 H 0.129 0.871 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 -20.265 13.377 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.038 4.038 4 C -0.137 4.137 5 C -0.077 4.077 6 C -0.135 4.135 7 C 0.345 3.655 8 O -0.418 6.418 9 N -0.363 5.363 10 C 0.041 3.959 11 H 0.118 0.882 12 C -0.171 4.171 13 C -0.160 4.160 14 C -0.151 4.151 15 C -0.123 4.123 16 H 0.095 0.905 17 C 0.039 3.961 18 N -0.387 5.387 19 C -0.461 4.461 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.591 5.591 23 Si 0.910 3.090 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.100 4.100 28 C -0.141 4.141 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.200 0.800 44 H 0.065 0.935 45 H 0.147 0.853 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.742 -19.444 11.996 22.913 hybrid contribution -0.002 -0.823 1.330 1.564 sum 1.740 -20.267 13.326 24.318 Atomic orbital electron populations 1.24489 0.95688 1.02556 0.98033 1.21836 0.95286 0.95728 1.01361 1.19325 0.93434 0.93270 0.97759 1.21236 0.93156 0.98193 1.01088 1.21216 1.00890 0.90711 0.94918 1.20062 0.93670 0.93808 1.05979 1.18234 0.87267 0.83750 0.76206 1.90764 1.13383 1.87609 1.50009 1.45913 1.10307 1.05525 1.74518 1.22059 0.96325 0.81424 0.96060 0.88208 1.22706 1.01823 0.95946 0.96595 1.22093 1.00806 0.94979 0.98099 1.22069 1.00273 0.96809 0.95908 1.22434 0.99033 0.93874 0.96998 0.90545 1.20611 0.94447 0.92097 0.88914 1.42330 1.53186 1.38394 1.04838 1.20039 1.25704 1.16819 0.83522 0.91878 1.25763 0.96631 0.95024 1.06899 1.70891 1.42894 1.41189 1.04120 0.83248 0.75803 0.75899 0.74020 1.21026 1.22273 1.22290 1.21266 0.93035 0.98597 0.97122 1.21231 1.00220 0.91455 1.01153 0.87813 0.87548 0.86158 0.85147 0.84448 0.76468 0.91432 0.91524 0.91773 0.91846 0.90898 0.91470 0.96394 0.96096 0.80019 0.93482 0.85333 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 14.15 28.84 0.41 -0.62 16 2 C -0.12 -0.87 9.90 -37.62 -0.37 -1.24 16 3 C -0.04 -0.34 5.87 -104.95 -0.62 -0.95 16 4 C -0.12 -1.08 9.76 -39.26 -0.38 -1.46 16 5 C -0.06 -0.64 9.58 -39.25 -0.38 -1.02 16 6 C -0.13 -1.58 5.88 -104.91 -0.62 -2.20 16 7 C 0.56 7.96 7.77 -12.40 -0.10 7.86 16 8 O -0.54 -9.39 15.98 5.30 0.08 -9.31 16 9 N -0.71 -9.23 5.13 -52.88 -0.27 -9.50 16 10 C 0.15 2.07 2.69 -65.94 -0.18 1.89 16 11 H 0.10 1.62 7.47 -51.93 -0.39 1.23 16 12 C -0.13 -1.63 6.51 -25.07 -0.16 -1.79 16 13 C -0.12 -1.49 6.80 -25.62 -0.17 -1.67 16 14 C -0.11 -1.69 6.05 -25.62 -0.15 -1.85 16 15 C -0.10 -1.64 2.55 -88.97 -0.23 -1.87 16 16 H 0.08 1.18 8.02 -51.92 -0.42 0.76 16 17 C 0.17 3.43 5.57 -4.05 -0.02 3.41 16 18 N -0.74 -18.76 5.44 -59.91 -0.33 -19.09 16 19 C -0.33 -9.48 9.99 -15.06 -0.15 -9.63 16 20 H 0.06 1.81 7.83 -52.49 -0.41 1.39 16 21 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 22 N -0.95 -29.33 13.70 55.49 0.76 -28.57 16 23 Si 1.08 26.25 29.92 -169.99 -5.09 21.17 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 27 C -0.08 -0.81 9.52 -39.25 -0.37 -1.19 16 28 C -0.12 -1.11 9.38 -39.26 -0.37 -1.48 16 29 H 0.10 0.58 6.02 -52.48 -0.32 0.26 16 30 H 0.11 0.47 8.06 -52.49 -0.42 0.05 16 31 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 34 H 0.40 4.36 6.58 -40.82 -0.27 4.09 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.22 7.77 -51.93 -0.40 0.82 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 43 H 0.37 9.36 6.35 -40.82 -0.26 9.10 16 44 H 0.25 7.72 6.77 -40.82 -0.28 7.44 16 45 H 0.13 1.06 6.38 -52.49 -0.34 0.73 16 46 H 0.13 0.91 6.15 -52.49 -0.32 0.59 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -34.25 377.02 -9.93 -44.18 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.82 Total: 10.68 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -3.96 Total: -15.24 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.16 Total: -57.16 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.09 Total: 21.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.25 -9.93 -44.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753892688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.911 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds