Wall clock time and date at job start Tue Mar 31 2020 11:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32681 * 1 3 3 C 1.47663 * 120.00045 * 2 1 4 4 C 1.39714 * 119.99612 * 179.97438 * 3 2 1 5 5 C 1.37604 * 120.00124 * 179.97438 * 4 3 2 6 6 C 1.39745 * 119.99945 * 0.02732 * 5 4 3 7 7 C 1.47681 * 120.00429 * 179.97438 * 6 5 4 8 8 O 1.21569 * 120.00239 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99780 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99565 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.81794 * 31.65839 * 10 9 7 12 12 C 1.54895 * 110.75342 * 268.32017 * 10 9 7 13 13 C 1.54259 * 104.19373 * 203.74566 * 12 10 9 14 14 C 1.53871 * 106.60160 * 23.61345 * 13 12 10 15 15 C 1.54260 * 106.59937 * 359.97438 * 14 13 12 16 16 H 1.09008 * 110.48690 * 95.20309 * 15 14 13 17 17 C 1.53001 * 110.48860 * 217.71147 * 15 14 13 18 18 N 1.46490 * 109.47264 * 293.54505 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.39745 * 119.98904 * 0.24863 * 6 5 4 28 28 C 1.37597 * 119.99488 * 359.46882 * 27 6 5 29 29 H 1.08003 * 119.99874 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00175 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00394 * 179.97438 * 2 1 3 32 32 H 1.08000 * 119.99878 * 0.02701 * 4 3 2 33 33 H 1.07996 * 120.00004 * 180.02562 * 5 4 3 34 34 H 0.96999 * 120.00166 * 359.97438 * 9 7 6 35 35 H 1.09004 * 110.48155 * 85.06826 * 12 10 9 36 36 H 1.09001 * 110.59996 * 322.48082 * 12 10 9 37 37 H 1.09005 * 110.03341 * 264.32198 * 13 12 10 38 38 H 1.09004 * 110.07194 * 142.92286 * 13 12 10 39 39 H 1.09000 * 110.03289 * 240.71026 * 14 13 12 40 40 H 1.08996 * 110.03704 * 119.28700 * 14 13 12 41 41 H 1.09003 * 109.46836 * 173.54212 * 17 15 14 42 42 H 1.08999 * 109.47071 * 53.55252 * 17 15 14 43 43 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 44 44 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 45 45 H 1.07995 * 119.99916 * 179.72661 * 27 6 5 46 46 H 1.07999 * 119.99787 * 180.29395 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4623 1.2787 0.0005 5 6 4.1504 2.4703 0.0000 6 6 3.4518 3.6806 -0.0005 7 6 4.1902 4.9595 -0.0005 8 8 5.4059 4.9596 0.0004 9 7 3.5163 6.1268 -0.0005 10 6 4.2489 7.3955 0.0001 11 1 5.1938 7.2974 -0.5343 12 6 4.4860 7.8917 1.4481 13 6 4.6752 9.4154 1.2996 14 6 3.9763 9.8196 -0.0103 15 6 3.3873 8.5273 -0.6124 16 1 2.3427 8.4130 -0.3226 17 6 3.5206 8.5374 -2.1366 18 7 2.6746 9.5955 -2.6938 19 6 2.6313 9.7959 -4.0477 20 1 3.2206 9.1736 -4.7048 21 6 1.8300 10.7990 -4.5757 22 7 1.1122 11.5578 -3.7749 23 14 1.7705 11.0718 -6.4227 24 1 0.8478 12.1946 -6.7278 25 1 3.1311 11.4013 -6.9184 26 1 1.2860 9.8370 -7.0902 27 6 2.0543 3.6805 0.0048 28 6 1.3666 2.4887 -0.0006 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8669 -0.9353 0.0004 32 1 4.0022 0.3433 0.0005 33 1 5.2304 2.4702 0.0000 34 1 2.5463 6.1268 -0.0008 35 1 5.3832 7.4347 1.8658 36 1 3.6211 7.6739 2.0747 37 1 5.7370 9.6564 1.2461 38 1 4.2172 9.9332 2.1424 39 1 4.6988 10.2567 -0.6995 40 1 3.1786 10.5328 0.1968 41 1 3.2061 7.5729 -2.5352 42 1 4.5598 8.7216 -2.4091 43 1 2.1455 10.1548 -2.1037 44 1 1.1428 11.4158 -2.8158 45 1 1.5143 4.6157 0.0089 46 1 0.2866 2.4886 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753892688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:32 Heat of formation + Delta-G solvation = -14.663535 kcal Electronic energy + Delta-G solvation = -25212.048095 eV Core-core repulsion = 21679.522656 eV Total energy + Delta-G solvation = -3532.525438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47596 -40.05904 -39.00959 -36.66788 -35.30011 -34.78204 -33.34335 -32.09359 -30.76733 -30.03142 -28.63181 -26.16959 -25.20224 -24.16803 -23.72634 -22.17180 -21.68188 -20.91892 -20.51332 -19.52343 -18.85974 -17.89137 -17.06519 -16.99403 -16.18623 -16.04213 -15.89825 -15.76515 -15.53548 -15.36705 -15.11034 -14.97179 -14.58700 -14.23501 -14.17782 -13.89901 -13.67455 -13.28532 -13.18768 -12.78721 -12.66047 -12.48595 -12.27211 -12.15883 -11.94486 -11.87617 -11.85780 -11.72600 -11.38646 -11.35441 -11.26057 -11.10611 -10.95538 -10.16196 -10.05992 -9.23541 -9.14201 -8.42818 -5.36424 -0.48580 0.36311 1.25014 1.56884 1.66438 1.83445 2.00827 2.06384 2.68373 2.91974 3.31936 3.36919 3.57394 3.58987 3.73254 3.76562 3.85152 3.91387 4.00904 4.28981 4.30734 4.32055 4.35967 4.38828 4.42319 4.44334 4.55480 4.62445 4.71802 4.85134 4.91281 4.93339 4.99505 5.04143 5.11241 5.16701 5.19596 5.20931 5.28518 5.32767 5.39507 5.49848 5.54787 5.63299 5.78476 5.88750 6.43025 6.48308 7.06913 7.09483 7.97018 8.08523 9.09521 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.003029 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.898967 B = 9242.614658 C =10921.754194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C -0.035 4.035 4 C -0.122 4.122 5 C -0.071 4.071 6 C -0.158 4.158 7 C 0.556 3.444 8 O -0.580 6.580 9 N -0.705 5.705 10 C 0.151 3.849 11 H 0.076 0.924 12 C -0.122 4.122 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.092 4.092 16 H 0.087 0.913 17 C 0.169 3.831 18 N -0.750 5.750 19 C -0.339 4.339 20 H 0.059 0.941 21 C -0.099 4.099 22 N -0.971 5.971 23 Si 1.126 2.874 24 H -0.289 1.289 25 H -0.280 1.280 26 H -0.278 1.278 27 C -0.081 4.081 28 C -0.130 4.130 29 H 0.107 0.893 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.153 0.847 33 H 0.129 0.871 34 H 0.411 0.589 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.011 0.989 42 H 0.008 0.992 43 H 0.364 0.636 44 H 0.246 0.754 45 H 0.143 0.857 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 -21.889 14.000 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.035 4.035 4 C -0.140 4.140 5 C -0.090 4.090 6 C -0.161 4.161 7 C 0.345 3.655 8 O -0.462 6.462 9 N -0.356 5.356 10 C 0.046 3.954 11 H 0.094 0.906 12 C -0.160 4.160 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.111 4.111 16 H 0.105 0.895 17 C 0.042 3.958 18 N -0.395 5.395 19 C -0.471 4.471 20 H 0.077 0.923 21 C -0.291 4.291 22 N -0.619 5.619 23 Si 0.951 3.049 24 H -0.215 1.215 25 H -0.206 1.206 26 H -0.204 1.204 27 C -0.100 4.100 28 C -0.148 4.148 29 H 0.125 0.875 30 H 0.143 0.857 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.147 0.853 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.029 0.971 42 H 0.026 0.974 43 H 0.197 0.803 44 H 0.056 0.944 45 H 0.161 0.839 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.446 -21.096 12.646 24.600 hybrid contribution 0.354 -0.436 1.136 1.267 sum 0.800 -21.533 13.782 25.578 Atomic orbital electron populations 1.24770 0.95441 1.03705 0.95445 1.21957 0.95785 0.95366 1.03067 1.19669 0.93526 0.94301 0.95988 1.21477 0.93596 0.98306 1.00574 1.21288 1.00721 0.91380 0.95601 1.19972 0.94536 0.92786 1.08787 1.18638 0.86935 0.84659 0.75233 1.90731 1.15119 1.88192 1.52124 1.45831 1.10818 1.04897 1.74042 1.21879 0.94953 0.81458 0.97135 0.90613 1.22641 1.02598 0.95728 0.95080 1.22043 1.00998 0.94962 0.96990 1.22024 0.99829 0.96134 0.96976 1.22280 1.00058 0.95271 0.93495 0.89521 1.20676 0.92666 0.90203 0.92215 1.42458 1.53718 1.39336 1.03959 1.20356 1.25127 1.16485 0.85113 0.92285 1.27184 0.96370 0.94933 1.10595 1.70993 1.44464 1.42480 1.03961 0.82648 0.76420 0.76266 0.69573 1.21474 1.20645 1.20387 1.21435 0.92198 0.99829 0.96546 1.21535 1.01399 0.91091 1.00770 0.87464 0.85681 0.84636 0.82888 0.85343 0.75169 0.91386 0.89804 0.91238 0.89684 0.93188 0.91684 0.97129 0.97409 0.80330 0.94390 0.83948 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 14.15 66.65 0.94 -0.43 16 2 C -0.14 -1.63 9.90 23.59 0.23 -1.40 16 3 C -0.03 -0.55 5.87 -20.07 -0.12 -0.67 16 4 C -0.12 -2.09 9.76 22.48 0.22 -1.87 16 5 C -0.07 -1.59 9.58 22.48 0.22 -1.37 16 6 C -0.16 -3.80 5.88 -20.05 -0.12 -3.92 16 7 C 0.56 16.23 7.77 86.74 0.67 16.91 16 8 O -0.58 -21.08 15.98 -3.93 -0.06 -21.14 16 9 N -0.71 -18.21 5.13 -439.47 -2.25 -20.46 16 10 C 0.15 4.29 2.69 46.28 0.12 4.41 16 11 H 0.08 2.55 7.47 -2.39 -0.02 2.53 16 12 C -0.12 -2.84 6.51 31.67 0.21 -2.63 16 13 C -0.11 -2.57 6.80 31.31 0.21 -2.36 16 14 C -0.11 -3.34 6.05 31.32 0.19 -3.15 16 15 C -0.09 -2.89 2.55 -9.73 -0.02 -2.92 16 16 H 0.09 2.59 8.02 -2.38 -0.02 2.57 16 17 C 0.17 7.12 5.57 86.38 0.48 7.60 16 18 N -0.75 -38.60 5.44 -343.47 -1.87 -40.47 16 19 C -0.34 -19.71 9.99 84.03 0.84 -18.87 16 20 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 21 C -0.10 -5.84 5.50 84.86 0.47 -5.37 16 22 N -0.97 -60.78 13.70 21.65 0.30 -60.48 16 23 Si 1.13 52.63 29.92 68.60 2.05 54.69 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 27 C -0.08 -1.55 9.52 22.48 0.21 -1.33 16 28 C -0.13 -2.10 9.38 22.47 0.21 -1.89 16 29 H 0.11 0.85 6.02 -2.91 -0.02 0.83 16 30 H 0.13 0.64 8.06 -2.91 -0.02 0.62 16 31 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 32 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.13 2.99 7.64 -2.91 -0.02 2.97 16 34 H 0.41 8.63 6.58 -92.71 -0.61 8.02 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.05 1.71 7.77 -2.39 -0.02 1.70 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.01 0.36 8.05 -2.39 -0.02 0.34 16 43 H 0.36 18.95 6.35 -92.71 -0.59 18.36 16 44 H 0.25 15.20 6.77 -92.71 -0.63 14.57 16 45 H 0.14 2.15 6.38 -2.91 -0.02 2.13 16 46 H 0.15 1.71 6.15 -2.91 -0.02 1.69 16 Total: -1.00 -74.71 377.02 3.07 -71.64 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.07 Total: 35.48 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.97 Total: -19.26 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -3.83 Total: -121.41 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.06 Total: -21.14 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 2.05 Total: 54.69 kcal Total: -74.71 3.07 -71.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753892688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.979 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds