Wall clock time and date at job start Tue Mar 31 2020 11:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47429 * 2 1 4 4 C 1.50698 * 115.54698 * 294.77210 * 3 2 1 5 5 O 1.21279 * 120.00195 * 123.55297 * 4 3 2 6 6 N 1.34781 * 120.00154 * 303.54822 * 4 3 2 7 7 C 1.46494 * 120.00195 * 175.03470 * 6 4 3 8 8 C 1.50699 * 109.47369 * 180.02562 * 7 6 4 9 9 C 1.38253 * 120.01861 * 89.99996 * 8 7 6 10 10 C 1.38142 * 119.96366 * 179.97438 * 9 8 7 11 11 C 1.38452 * 120.10445 * 0.27509 * 10 9 8 12 12 C 1.38072 * 119.92686 * 359.45051 * 11 10 9 13 13 C 1.38146 * 120.02108 * 269.98430 * 8 7 6 14 14 C 1.50782 * 108.85854 * 180.34917 * 12 11 10 15 15 N 1.46635 * 107.70118 * 0.25513 * 14 12 11 16 16 C 1.36937 * 126.56664 * 179.97438 * 15 14 12 17 17 H 1.08008 * 119.99533 * 354.85430 * 16 15 14 18 18 C 1.38809 * 120.00538 * 174.84928 * 16 15 14 19 19 N 1.31620 * 119.99659 * 5.46655 * 18 16 15 20 20 Si 1.86803 * 120.00159 * 185.46569 * 18 16 15 21 21 H 1.48502 * 109.47087 * 94.99873 * 20 18 16 22 22 H 1.48496 * 109.46802 * 214.99762 * 20 18 16 23 23 H 1.48498 * 109.46846 * 334.99694 * 20 18 16 24 24 C 1.46641 * 106.87610 * 359.97438 * 15 14 12 25 25 C 1.52995 * 117.50054 * 80.44223 * 3 2 1 26 26 C 1.52995 * 117.49894 * 149.10204 * 3 2 1 27 27 H 1.08995 * 109.47225 * 305.48688 * 1 2 3 28 28 H 1.09008 * 109.46930 * 65.48373 * 1 2 3 29 29 H 1.08997 * 109.47678 * 185.48141 * 1 2 3 30 30 H 1.08996 * 109.47001 * 239.99258 * 2 1 3 31 31 H 1.09000 * 109.46636 * 119.99689 * 2 1 3 32 32 H 0.97004 * 119.99514 * 355.04723 * 6 4 3 33 33 H 1.09005 * 109.47362 * 60.00512 * 7 6 4 34 34 H 1.09000 * 109.47161 * 300.00467 * 7 6 4 35 35 H 1.08004 * 120.01772 * 0.02562 * 9 8 7 36 36 H 1.08007 * 119.94944 * 180.02562 * 10 9 8 37 37 H 1.08003 * 119.94785 * 359.97438 * 13 8 7 38 38 H 1.08998 * 109.80653 * 119.79794 * 14 12 11 39 39 H 1.08991 * 109.81252 * 240.70607 * 14 12 11 40 40 H 0.97002 * 119.99968 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.81298 * 119.54457 * 24 15 14 42 42 H 1.08996 * 109.81366 * 240.38516 * 24 15 14 43 43 H 1.09004 * 117.49748 * 215.00788 * 25 3 2 44 44 H 1.08998 * 117.49988 * 0.02562 * 25 3 2 45 45 H 1.08993 * 117.50324 * 359.97438 * 26 3 2 46 46 H 1.09009 * 117.49744 * 144.97392 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7196 2.2451 -1.2345 5 8 1.1149 3.2919 -1.1373 6 7 2.1051 1.7997 -2.4468 7 6 1.7005 2.5222 -3.6553 8 6 2.2571 1.8229 -4.8687 9 6 1.5223 0.8328 -5.4941 10 6 2.0334 0.1929 -6.6066 11 6 3.2829 0.5376 -7.0932 12 6 4.0142 1.5304 -6.4719 13 6 3.5016 2.1711 -5.3569 14 6 5.3195 1.7060 -7.2059 15 7 5.3341 0.7564 -8.3231 16 6 6.3379 0.5902 -9.2396 17 1 7.1933 1.2497 -9.2291 18 6 6.2564 -0.4258 -10.1819 19 7 5.1676 -1.1606 -10.2647 20 14 7.6919 -0.7500 -11.3325 21 1 8.5462 -1.8252 -10.7673 22 1 7.1768 -1.1730 -12.6594 23 1 8.4937 0.4906 -11.4852 24 6 4.0679 0.0186 -8.2713 25 6 2.0631 2.1836 1.3382 26 6 3.3735 1.7202 0.6969 27 1 -0.3633 0.5965 0.8367 28 1 -0.3633 0.4265 -0.9351 29 1 -0.3634 -1.0229 0.0982 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 2.6504 1.0007 -2.5190 33 1 2.0845 3.5415 -3.6150 34 1 0.6125 2.5460 -3.7172 35 1 0.5490 0.5603 -5.1136 36 1 1.4590 -0.5803 -7.0953 37 1 4.0751 2.9451 -4.8686 38 1 5.3954 2.7247 -7.5860 39 1 6.1521 1.4985 -6.5338 40 1 5.1107 -1.8709 -10.9229 41 1 3.5078 0.1807 -9.1922 42 1 4.2653 -1.0454 -8.1415 43 1 1.8465 3.2518 1.3257 44 1 1.7154 1.6435 2.2188 45 1 3.8871 0.8755 1.1557 46 1 4.0192 2.4834 0.2622 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755102450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:38 Heat of formation + Delta-G solvation = 34.076719 kcal Electronic energy + Delta-G solvation = -25270.514668 eV Core-core repulsion = 21740.102766 eV Total energy + Delta-G solvation = -3530.411902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.44462 -39.61363 -37.31163 -36.28031 -34.53554 -32.35720 -32.15049 -31.18101 -29.78368 -27.67159 -26.15046 -25.18148 -24.12052 -22.91009 -22.42798 -22.01458 -20.45703 -20.24281 -19.44631 -17.15235 -17.04784 -16.22648 -15.78212 -15.57307 -15.15463 -14.93257 -14.43942 -14.33496 -14.27109 -14.15179 -13.95530 -13.43135 -13.19935 -13.04657 -12.71788 -12.41432 -12.01866 -11.94880 -11.88345 -11.78282 -11.70009 -11.57427 -11.50361 -11.11459 -10.87345 -10.73169 -10.51163 -10.36225 -10.24310 -10.16161 -9.93697 -9.83397 -9.18663 -8.96340 -8.44762 -8.04988 -6.88613 -5.85831 -3.18592 1.54738 1.71609 2.40497 3.07998 3.35102 3.40063 3.42366 3.42947 4.09853 4.24405 4.37954 4.47102 4.50404 4.62678 4.72421 4.95094 4.99648 5.12986 5.21156 5.23154 5.28876 5.30745 5.38787 5.47878 5.52995 5.55135 5.59423 5.64520 5.66772 5.76284 5.81523 5.83345 5.96242 5.99461 6.08347 6.28406 6.46931 6.51158 6.52381 6.73771 6.76300 7.02140 7.28673 7.31256 7.39887 7.50079 7.65718 8.08440 8.09793 9.07619 9.67637 10.34968 11.28496 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.002433 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.658408 B =11506.512951 C =11667.794085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.161 4.161 4 C 0.551 3.449 5 O -0.542 6.542 6 N -0.718 5.718 7 C 0.170 3.830 8 C -0.132 4.132 9 C -0.103 4.103 10 C -0.112 4.112 11 C -0.080 4.080 12 C -0.106 4.106 13 C -0.084 4.084 14 C 0.175 3.825 15 N -0.601 5.601 16 C -0.227 4.227 17 H 0.084 0.916 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.917 3.083 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.204 3.796 25 C -0.144 4.144 26 C -0.157 4.157 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.404 0.596 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.255 0.745 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 2.318 20.384 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 C -0.164 4.164 4 C 0.337 3.663 5 O -0.419 6.419 6 N -0.370 5.370 7 C 0.047 3.953 8 C -0.132 4.132 9 C -0.122 4.122 10 C -0.131 4.131 11 C -0.081 4.081 12 C -0.107 4.107 13 C -0.103 4.103 14 C 0.050 3.950 15 N -0.327 5.327 16 C -0.355 4.355 17 H 0.102 0.898 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.747 3.253 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.080 3.920 25 C -0.181 4.181 26 C -0.195 4.195 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.333 2.947 20.221 22.068 hybrid contribution 0.923 -0.639 -0.785 1.370 sum -7.410 2.308 19.436 20.928 Atomic orbital electron populations 1.21735 0.95018 1.01733 1.02366 1.21039 0.96429 0.91496 1.02873 1.21545 1.04258 0.97499 0.93147 1.19496 0.78383 0.84869 0.83600 1.90690 1.41214 1.23419 1.86579 1.46102 1.54509 1.31033 1.05309 1.20110 0.99335 0.95052 0.80786 1.19454 0.95765 0.99887 0.98097 1.20814 0.99313 0.96126 0.95929 1.20502 0.95009 1.00780 0.96778 1.21544 0.93842 0.95086 0.97652 1.20726 0.97789 0.96717 0.95465 1.20299 0.94746 0.99642 0.95567 1.19708 0.91498 0.94352 0.89476 1.43957 1.17405 1.41393 1.29954 1.18988 0.97515 1.11913 1.07048 0.89837 1.24856 0.97915 0.97949 0.99549 1.69932 1.26035 1.23262 1.37613 0.86017 0.81313 0.78140 0.79817 1.21444 1.21611 1.20471 1.19754 0.85205 0.96019 0.91013 1.22990 0.99867 1.01395 0.93884 1.23107 0.90023 1.03762 1.02571 0.92370 0.92716 0.92302 0.91024 0.90883 0.76155 0.90850 0.90929 0.86358 0.86111 0.86573 0.94618 0.94544 0.93451 0.92052 0.91524 0.87748 0.88005 0.87740 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.71 37.16 0.36 -0.80 16 2 C -0.08 -0.58 5.79 -26.73 -0.15 -0.74 16 3 C -0.16 -1.43 1.91 -155.67 -0.30 -1.72 16 4 C 0.55 6.49 6.64 -10.98 -0.07 6.42 16 5 O -0.54 -8.35 16.50 5.56 0.09 -8.26 16 6 N -0.72 -7.72 5.52 -61.48 -0.34 -8.06 16 7 C 0.17 2.00 5.80 -5.20 -0.03 1.97 16 8 C -0.13 -1.75 5.25 -104.65 -0.55 -2.30 16 9 C -0.10 -1.40 9.70 -39.61 -0.38 -1.79 16 10 C -0.11 -1.82 10.05 -39.54 -0.40 -2.21 16 11 C -0.08 -1.58 6.22 -104.57 -0.65 -2.23 16 12 C -0.11 -1.99 6.22 -104.57 -0.65 -2.64 16 13 C -0.08 -1.26 9.70 -39.54 -0.38 -1.65 16 14 C 0.18 3.71 7.25 -5.08 -0.04 3.67 16 15 N -0.60 -15.40 3.41 -175.67 -0.60 -16.00 16 16 C -0.23 -6.24 10.31 -15.06 -0.16 -6.39 16 17 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.41 10.47 55.49 0.58 -25.83 16 20 Si 0.92 21.59 29.56 -169.99 -5.02 16.56 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.20 4.95 5.40 -5.08 -0.03 4.93 16 25 C -0.14 -1.16 9.76 -26.70 -0.26 -1.42 16 26 C -0.16 -1.17 9.93 -26.70 -0.27 -1.44 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.50 7.88 -51.92 -0.41 0.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.50 7.95 -51.93 -0.41 0.09 16 31 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.40 3.85 8.28 -40.82 -0.34 3.51 16 33 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 1.63 7.63 -51.93 -0.40 1.23 16 42 H 0.07 1.77 7.36 -51.93 -0.38 1.38 16 43 H 0.10 0.99 7.84 -51.93 -0.41 0.58 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -31.21 380.44 -10.99 -42.20 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.38 Total: 2.26 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -4.05 Total: -8.61 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.36 Total: -49.89 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.21 -10.99 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755102450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.273 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds