Wall clock time and date at job start Tue Mar 31 2020 11:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47429 * 2 1 4 4 C 1.50698 * 115.54698 * 294.77210 * 3 2 1 5 5 O 1.21279 * 120.00195 * 123.55297 * 4 3 2 6 6 N 1.34781 * 120.00154 * 303.54822 * 4 3 2 7 7 C 1.46494 * 120.00195 * 175.03470 * 6 4 3 8 8 C 1.50699 * 109.47369 * 180.02562 * 7 6 4 9 9 C 1.38253 * 120.01861 * 89.99996 * 8 7 6 10 10 C 1.38142 * 119.96366 * 179.97438 * 9 8 7 11 11 C 1.38452 * 120.10445 * 0.27509 * 10 9 8 12 12 C 1.38072 * 119.92686 * 359.45051 * 11 10 9 13 13 C 1.38146 * 120.02108 * 269.98430 * 8 7 6 14 14 C 1.50782 * 108.85854 * 180.34917 * 12 11 10 15 15 N 1.46635 * 107.70118 * 0.25513 * 14 12 11 16 16 C 1.36937 * 126.56664 * 179.97438 * 15 14 12 17 17 H 1.08008 * 119.99533 * 354.85430 * 16 15 14 18 18 C 1.38809 * 120.00538 * 174.84928 * 16 15 14 19 19 N 1.31620 * 119.99659 * 5.46655 * 18 16 15 20 20 Si 1.86803 * 120.00159 * 185.46569 * 18 16 15 21 21 H 1.48502 * 109.47087 * 94.99873 * 20 18 16 22 22 H 1.48496 * 109.46802 * 214.99762 * 20 18 16 23 23 H 1.48498 * 109.46846 * 334.99694 * 20 18 16 24 24 C 1.46641 * 106.87610 * 359.97438 * 15 14 12 25 25 C 1.52995 * 117.50054 * 80.44223 * 3 2 1 26 26 C 1.52995 * 117.49894 * 149.10204 * 3 2 1 27 27 H 1.08995 * 109.47225 * 305.48688 * 1 2 3 28 28 H 1.09008 * 109.46930 * 65.48373 * 1 2 3 29 29 H 1.08997 * 109.47678 * 185.48141 * 1 2 3 30 30 H 1.08996 * 109.47001 * 239.99258 * 2 1 3 31 31 H 1.09000 * 109.46636 * 119.99689 * 2 1 3 32 32 H 0.97004 * 119.99514 * 355.04723 * 6 4 3 33 33 H 1.09005 * 109.47362 * 60.00512 * 7 6 4 34 34 H 1.09000 * 109.47161 * 300.00467 * 7 6 4 35 35 H 1.08004 * 120.01772 * 0.02562 * 9 8 7 36 36 H 1.08007 * 119.94944 * 180.02562 * 10 9 8 37 37 H 1.08003 * 119.94785 * 359.97438 * 13 8 7 38 38 H 1.08998 * 109.80653 * 119.79794 * 14 12 11 39 39 H 1.08991 * 109.81252 * 240.70607 * 14 12 11 40 40 H 0.97002 * 119.99968 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.81298 * 119.54457 * 24 15 14 42 42 H 1.08996 * 109.81366 * 240.38516 * 24 15 14 43 43 H 1.09004 * 117.49748 * 215.00788 * 25 3 2 44 44 H 1.08998 * 117.49988 * 0.02562 * 25 3 2 45 45 H 1.08993 * 117.50324 * 359.97438 * 26 3 2 46 46 H 1.09009 * 117.49744 * 144.97392 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7196 2.2451 -1.2345 5 8 1.1149 3.2919 -1.1373 6 7 2.1051 1.7997 -2.4468 7 6 1.7005 2.5222 -3.6553 8 6 2.2571 1.8229 -4.8687 9 6 1.5223 0.8328 -5.4941 10 6 2.0334 0.1929 -6.6066 11 6 3.2829 0.5376 -7.0932 12 6 4.0142 1.5304 -6.4719 13 6 3.5016 2.1711 -5.3569 14 6 5.3195 1.7060 -7.2059 15 7 5.3341 0.7564 -8.3231 16 6 6.3379 0.5902 -9.2396 17 1 7.1933 1.2497 -9.2291 18 6 6.2564 -0.4258 -10.1819 19 7 5.1676 -1.1606 -10.2647 20 14 7.6919 -0.7500 -11.3325 21 1 8.5462 -1.8252 -10.7673 22 1 7.1768 -1.1730 -12.6594 23 1 8.4937 0.4906 -11.4852 24 6 4.0679 0.0186 -8.2713 25 6 2.0631 2.1836 1.3382 26 6 3.3735 1.7202 0.6969 27 1 -0.3633 0.5965 0.8367 28 1 -0.3633 0.4265 -0.9351 29 1 -0.3634 -1.0229 0.0982 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 2.6504 1.0007 -2.5190 33 1 2.0845 3.5415 -3.6150 34 1 0.6125 2.5460 -3.7172 35 1 0.5490 0.5603 -5.1136 36 1 1.4590 -0.5803 -7.0953 37 1 4.0751 2.9451 -4.8686 38 1 5.3954 2.7247 -7.5860 39 1 6.1521 1.4985 -6.5338 40 1 5.1107 -1.8709 -10.9229 41 1 3.5078 0.1807 -9.1922 42 1 4.2653 -1.0454 -8.1415 43 1 1.8465 3.2518 1.3257 44 1 1.7154 1.6435 2.2188 45 1 3.8871 0.8755 1.1557 46 1 4.0192 2.4834 0.2622 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755102450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:37 Heat of formation + Delta-G solvation = 16.547542 kcal Electronic energy + Delta-G solvation = -25271.274790 eV Core-core repulsion = 21740.102766 eV Total energy + Delta-G solvation = -3531.172024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40652 -40.90703 -38.24459 -37.61100 -35.76015 -34.10319 -32.82582 -32.45337 -31.41946 -29.12846 -27.76380 -26.51970 -25.01084 -23.74713 -23.47052 -23.06396 -22.11583 -21.47003 -20.36933 -19.00807 -17.90860 -17.24972 -17.14586 -16.63776 -16.35332 -16.10056 -16.07811 -15.85233 -15.44007 -15.01558 -14.83301 -14.72949 -14.51758 -14.09840 -13.56422 -13.48452 -13.48125 -13.36451 -13.28369 -13.05932 -13.04382 -12.71636 -12.57585 -12.37722 -12.09637 -12.08066 -11.99568 -11.84776 -11.65814 -11.33971 -11.01399 -10.92307 -10.77741 -10.12601 -9.73609 -9.59359 -8.85679 -7.95201 -5.31554 0.25485 0.43689 1.45696 1.48118 1.53770 1.57316 2.17197 2.44001 2.77077 2.85589 3.27075 3.44618 3.52906 3.63365 3.74962 3.82938 3.89241 3.95964 4.02106 4.12029 4.32086 4.43135 4.49185 4.58181 4.60138 4.66058 4.71423 4.76605 4.76661 4.82687 4.95815 4.99187 5.05243 5.10939 5.16201 5.20197 5.23118 5.26400 5.32924 5.37467 5.39815 5.43926 5.51277 5.55269 5.85085 6.02941 6.08950 6.52606 6.99358 7.20538 7.64205 8.32445 9.18271 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.002433 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.658408 B =11506.512951 C =11667.794085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.170 4.170 4 C 0.549 3.451 5 O -0.583 6.583 6 N -0.711 5.711 7 C 0.175 3.825 8 C -0.108 4.108 9 C -0.087 4.087 10 C -0.110 4.110 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.076 4.076 14 C 0.171 3.829 15 N -0.624 5.624 16 C -0.246 4.246 17 H 0.090 0.910 18 C -0.063 4.063 19 N -0.951 5.951 20 Si 0.987 3.013 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.265 1.265 24 C 0.220 3.780 25 C -0.147 4.147 26 C -0.145 4.145 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.412 0.588 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.251 0.749 41 H 0.021 0.979 42 H 0.028 0.972 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 2.379 22.826 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.173 4.173 4 C 0.337 3.663 5 O -0.463 6.463 6 N -0.362 5.362 7 C 0.052 3.948 8 C -0.108 4.108 9 C -0.105 4.105 10 C -0.128 4.128 11 C -0.111 4.111 12 C -0.117 4.117 13 C -0.095 4.095 14 C 0.046 3.954 15 N -0.351 5.351 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.256 4.256 19 N -0.599 5.599 20 Si 0.814 3.186 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.190 1.190 24 C 0.095 3.905 25 C -0.185 4.185 26 C -0.182 4.182 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.248 0.752 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.172 0.828 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.538 3.013 22.683 24.423 hybrid contribution 0.917 -0.581 -1.441 1.804 sum -7.621 2.432 21.242 22.698 Atomic orbital electron populations 1.21737 0.95573 1.02288 1.01249 1.21072 0.95871 0.90398 1.04102 1.21570 1.05709 0.98056 0.91965 1.19997 0.77416 0.84459 0.84463 1.90674 1.43125 1.25336 1.87175 1.46001 1.54271 1.31068 1.04829 1.20030 0.99678 0.94821 0.80294 1.19612 0.94610 0.98748 0.97871 1.21140 1.00356 0.94820 0.94225 1.20690 0.93626 1.01112 0.97415 1.21187 0.95697 0.97004 0.97221 1.20566 0.96645 0.97639 0.96871 1.20480 0.95425 0.99437 0.94150 1.19804 0.93491 0.93396 0.88671 1.44259 1.17528 1.42412 1.30887 1.19403 0.98228 1.12149 1.07618 0.89228 1.25774 1.00501 0.97928 1.01428 1.70160 1.27858 1.23646 1.38228 0.84940 0.78106 0.78291 0.77251 1.21069 1.21909 1.18980 1.19296 0.85180 0.94303 0.91707 1.23041 1.00578 1.00542 0.94304 1.23200 0.89416 1.04125 1.01477 0.92734 0.94463 0.91039 0.90566 0.88864 0.75151 0.90943 0.90157 0.82804 0.85029 0.84383 0.94236 0.93894 0.93973 0.96145 0.95368 0.89684 0.85998 0.85405 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.71 71.98 0.70 -1.26 16 2 C -0.08 -0.87 5.79 30.59 0.18 -0.69 16 3 C -0.17 -2.58 1.91 -52.93 -0.10 -2.68 16 4 C 0.55 11.83 6.64 87.66 0.58 12.42 16 5 O -0.58 -17.30 16.50 -3.02 -0.05 -17.35 16 6 N -0.71 -13.25 5.52 -466.80 -2.58 -15.82 16 7 C 0.17 3.56 5.80 85.63 0.50 4.06 16 8 C -0.11 -2.53 5.25 -19.88 -0.10 -2.64 16 9 C -0.09 -2.08 9.70 22.25 0.22 -1.87 16 10 C -0.11 -3.43 10.05 22.30 0.22 -3.21 16 11 C -0.11 -4.41 6.22 -19.83 -0.12 -4.53 16 12 C -0.12 -4.31 6.22 -19.83 -0.12 -4.43 16 13 C -0.08 -2.12 9.70 22.30 0.22 -1.91 16 14 C 0.17 7.37 7.25 85.63 0.62 7.99 16 15 N -0.62 -33.41 3.41 -709.70 -2.42 -35.82 16 16 C -0.25 -13.95 10.31 84.03 0.87 -13.08 16 17 H 0.09 4.80 7.83 -2.91 -0.02 4.77 16 18 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 19 N -0.95 -57.18 10.47 21.65 0.23 -56.96 16 20 Si 0.99 45.33 29.56 68.60 2.03 47.36 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 C 0.22 11.35 5.40 85.63 0.46 11.81 16 25 C -0.15 -2.07 9.76 30.62 0.30 -1.77 16 26 C -0.15 -1.75 9.93 30.62 0.30 -1.45 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 0.60 7.88 -2.38 -0.02 0.58 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.80 7.95 -2.39 -0.02 0.78 16 31 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 32 H 0.41 6.47 8.28 -92.70 -0.77 5.70 16 33 H 0.07 1.56 8.09 -2.38 -0.02 1.55 16 34 H 0.08 1.60 8.09 -2.39 -0.02 1.58 16 35 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.02 1.18 7.63 -2.39 -0.02 1.17 16 42 H 0.03 1.62 7.36 -2.39 -0.02 1.60 16 43 H 0.08 1.54 7.84 -2.38 -0.02 1.52 16 44 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -71.62 380.44 2.59 -69.04 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.20 Total: 15.92 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.18 Total: -6.36 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.77 Total: -108.60 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.05 Total: -17.35 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.62 2.59 -69.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755102450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.583 kcal (2) G-P(sol) polarization free energy of solvation -71.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds