Wall clock time and date at job start Tue Mar 31 2020 11:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47272 * 2 1 4 4 C 1.53009 * 109.47058 * 119.99614 * 2 1 3 5 5 N 1.46499 * 109.47021 * 174.78213 * 4 2 1 6 6 C 1.46506 * 119.99835 * 277.45890 * 5 4 2 7 7 C 1.50697 * 109.46907 * 270.00486 * 6 5 4 8 8 H 1.07993 * 120.00467 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99665 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99722 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00172 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47078 * 59.99375 * 11 9 7 13 13 H 1.48496 * 109.47061 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46924 * 299.99713 * 11 9 7 15 15 C 1.34777 * 120.00153 * 97.46281 * 5 4 2 16 16 O 1.21277 * 119.99781 * 176.03891 * 15 5 4 17 17 C 1.50704 * 119.99834 * 356.31204 * 15 5 4 18 18 C 1.50700 * 109.46827 * 176.24995 * 17 15 5 19 19 C 1.34245 * 126.50144 * 265.02404 * 18 17 15 20 20 N 1.36822 * 109.92700 * 180.02562 * 19 18 17 21 21 H 0.97004 * 125.06551 * 180.02562 * 20 19 18 22 22 C 1.37691 * 109.87829 * 0.02562 * 20 19 18 23 23 C 1.39127 * 133.50694 * 180.02562 * 22 20 19 24 24 C 1.37741 * 119.78068 * 179.97438 * 23 22 20 25 25 C 1.38842 * 120.66200 * 359.97438 * 24 23 22 26 26 C 1.36620 * 120.53206 * 0.02562 * 25 24 23 27 27 C 1.39641 * 119.75986 * 359.69447 * 26 25 24 28 28 H 1.08998 * 109.46935 * 300.00339 * 1 2 3 29 29 H 1.08999 * 109.46468 * 60.00648 * 1 2 3 30 30 H 1.08998 * 109.46660 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47418 * 239.99481 * 2 1 3 32 32 H 1.09001 * 109.46311 * 294.55962 * 3 2 1 33 33 H 1.09000 * 109.46737 * 54.55015 * 3 2 1 34 34 H 1.09000 * 109.47344 * 174.55463 * 3 2 1 35 35 H 1.09001 * 109.46853 * 54.77950 * 4 2 1 36 36 H 1.09003 * 109.46695 * 294.78198 * 4 2 1 37 37 H 1.08998 * 109.46869 * 30.00340 * 6 5 4 38 38 H 1.08997 * 109.46934 * 150.00385 * 6 5 4 39 39 H 0.97002 * 119.99677 * 180.02562 * 10 9 7 40 40 H 1.08991 * 109.47054 * 296.24900 * 17 15 5 41 41 H 1.09002 * 109.47080 * 56.25349 * 17 15 5 42 42 H 1.07994 * 125.03414 * 0.02562 * 19 18 17 43 43 H 1.08003 * 120.10746 * 359.94389 * 23 22 20 44 44 H 1.07992 * 119.67127 * 179.97438 * 24 23 22 45 45 H 1.08003 * 119.73015 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.12092 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.4996 -0.8309 1.1882 6 6 4.1213 -1.9119 0.4192 7 6 4.3204 -3.1115 1.3095 8 1 4.0149 -3.0724 2.3445 9 6 4.8936 -4.2585 0.8027 10 7 5.2662 -4.3058 -0.4577 11 14 5.1398 -5.7457 1.9058 12 1 3.8246 -6.2006 2.4242 13 1 5.7701 -6.8412 1.1264 14 1 6.0199 -5.3775 3.0439 15 6 4.2705 0.0625 1.8394 16 8 5.4760 -0.0696 1.8485 17 6 3.6340 1.2221 2.5614 18 6 4.6981 2.0127 3.2782 19 6 5.0659 1.8758 4.5620 20 7 6.0624 2.7652 4.8589 21 1 6.4903 2.8540 5.7249 22 6 6.3674 3.5154 3.7453 23 6 7.2806 4.5356 3.4985 24 6 7.3503 5.1029 2.2453 25 6 6.5181 4.6666 1.2232 26 6 5.6141 3.6662 1.4436 27 6 5.5306 3.0729 2.7049 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.7584 1.9273 -0.9347 33 1 1.5992 1.9837 0.8372 34 1 3.1257 1.4441 0.0975 35 1 1.6023 -1.7183 1.2974 36 1 1.7550 -0.1561 2.1368 37 1 3.4748 -2.1823 -0.4156 38 1 5.0864 -1.5781 0.0381 39 1 5.6691 -5.1129 -0.8144 40 1 3.1272 1.8644 1.8413 41 1 2.9108 0.8465 3.2854 42 1 4.6386 1.1686 5.2573 43 1 7.9322 4.8820 4.2871 44 1 8.0595 5.8950 2.0558 45 1 6.5852 5.1223 0.2464 46 1 4.9703 3.3316 0.6437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037493697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:59 Heat of formation + Delta-G solvation = 14.142741 kcal Electronic energy + Delta-G solvation = -26459.178561 eV Core-core repulsion = 22927.902257 eV Total energy + Delta-G solvation = -3531.276304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12471 -39.06509 -36.76627 -36.16334 -33.69966 -32.71743 -32.16923 -30.14959 -29.14142 -27.97679 -27.13014 -26.36229 -25.23648 -22.76244 -22.65587 -21.62290 -20.16049 -19.60293 -18.14231 -17.45618 -16.47032 -16.37190 -16.19118 -15.40443 -15.16259 -14.84873 -14.50729 -14.15751 -14.13297 -13.87565 -13.65335 -13.18666 -13.07638 -12.67567 -12.49491 -12.33153 -12.15921 -11.94952 -11.74563 -11.57997 -11.52048 -11.27015 -11.09240 -10.88602 -10.75767 -10.69878 -10.58561 -10.43245 -10.33131 -10.06111 -9.55147 -9.47601 -8.70628 -8.37421 -8.04545 -7.51477 -7.45346 -5.98189 -4.02163 1.28875 1.79147 2.82761 3.26111 3.34367 3.38884 3.41586 3.60751 4.02623 4.19993 4.50395 4.85640 4.94467 5.09657 5.11951 5.18425 5.23181 5.24508 5.35686 5.38767 5.44514 5.57497 5.65820 5.72698 5.75862 5.80871 5.86019 5.90084 5.98153 6.01319 6.05832 6.12806 6.25846 6.28405 6.34345 6.52124 6.60359 6.62016 6.75806 6.85201 6.95432 7.18366 7.31904 7.53365 7.66222 7.66741 7.99237 8.31792 8.57238 8.98441 9.27374 9.62709 11.09762 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.004243 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.540932 B = 6598.170427 C = 7854.463911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.151 4.151 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.249 3.751 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.505 3.495 16 O -0.530 6.530 17 C -0.083 4.083 18 C -0.138 4.138 19 C 0.054 3.946 20 N -0.596 5.596 21 H 0.413 0.587 22 C 0.095 3.905 23 C -0.134 4.134 24 C -0.104 4.104 25 C -0.152 4.152 26 C -0.063 4.063 27 C -0.086 4.086 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.040 0.960 39 H 0.263 0.737 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.167 0.833 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 17.606 6.792 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.208 4.208 4 C -0.009 4.009 5 N -0.331 5.331 6 C 0.130 3.870 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.292 3.708 16 O -0.406 6.406 17 C -0.123 4.123 18 C -0.146 4.146 19 C -0.071 4.071 20 N -0.199 5.199 21 H 0.249 0.751 22 C -0.012 4.012 23 C -0.155 4.155 24 C -0.123 4.123 25 C -0.171 4.171 26 C -0.081 4.081 27 C -0.091 4.091 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.184 0.816 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.028 17.365 6.776 19.306 hybrid contribution 0.376 -1.072 0.969 1.494 sum -4.652 16.292 7.745 18.630 Atomic orbital electron populations 1.21761 0.95146 1.01771 1.01320 1.21568 0.95310 0.96503 1.00276 1.22056 1.01592 0.96085 1.01103 1.21525 0.81896 1.00927 0.96518 1.48208 1.05132 1.29187 1.50581 1.19188 0.94010 0.83244 0.90582 1.21405 1.40306 0.97404 0.96973 0.92640 1.24923 0.95387 0.98706 0.95089 1.69925 1.41825 1.28555 1.13211 0.86599 0.78332 0.82079 0.80626 1.20308 1.21237 1.20308 1.20291 0.87476 0.83136 0.79939 1.90686 1.14456 1.75132 1.60348 1.20451 0.96325 0.95679 0.99878 1.19703 1.01859 0.99962 0.93037 1.21524 0.92660 0.95544 0.97391 1.41617 1.34268 1.32664 1.11374 0.75097 1.18228 0.99258 0.96377 0.87371 1.19944 0.99808 0.97743 0.98020 1.20719 0.99366 0.99900 0.92320 1.20570 0.98074 0.99352 0.99129 1.20271 0.98026 0.94873 0.94936 1.19008 0.98374 0.98186 0.93542 0.92893 0.92909 0.92514 0.90462 0.93022 0.92688 0.92108 0.90385 0.91519 0.95201 0.94190 0.92781 0.87723 0.89254 0.81553 0.86681 0.86160 0.86322 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.12 -1.61 3.11 -90.61 -0.28 -1.89 16 3 C -0.15 -1.90 7.55 37.16 0.28 -1.62 16 4 C 0.12 1.85 4.89 -4.04 -0.02 1.83 16 5 N -0.60 -12.56 2.22 -175.05 -0.39 -12.95 16 6 C 0.25 6.55 5.15 -5.19 -0.03 6.53 16 7 C -0.52 -14.95 9.39 -34.44 -0.32 -15.27 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 11 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.51 10.60 6.54 -10.98 -0.07 10.53 16 16 O -0.53 -13.85 15.66 5.56 0.09 -13.76 16 17 C -0.08 -1.28 4.65 -29.03 -0.14 -1.42 16 18 C -0.14 -2.21 4.81 -102.71 -0.49 -2.71 16 19 C 0.05 0.75 11.73 -16.73 -0.20 0.55 16 20 N -0.60 -7.45 6.07 -10.65 -0.06 -7.52 16 21 H 0.41 3.66 8.96 -40.82 -0.37 3.29 16 22 C 0.09 1.38 7.28 -83.99 -0.61 0.77 16 23 C -0.13 -1.69 10.08 -39.43 -0.40 -2.09 16 24 C -0.10 -1.25 10.01 -39.54 -0.40 -1.65 16 25 C -0.15 -1.98 9.97 -39.94 -0.40 -2.38 16 26 C -0.06 -0.95 10.05 -39.64 -0.40 -1.34 16 27 C -0.09 -1.41 6.35 -105.14 -0.67 -2.08 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.23 7.94 -51.93 -0.41 0.82 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.59 7.18 -51.93 -0.37 0.21 16 34 H 0.06 0.90 5.63 -51.93 -0.29 0.61 16 35 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.07 0.88 6.09 -51.93 -0.32 0.57 16 37 H 0.03 0.80 7.87 -51.93 -0.41 0.39 16 38 H 0.04 1.20 7.48 -51.93 -0.39 0.81 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.10 1.43 4.24 -51.93 -0.22 1.20 16 41 H 0.09 1.16 7.09 -51.93 -0.37 0.79 16 42 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 46 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -35.64 373.89 -9.83 -45.47 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.92 Total: 4.01 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -3.89 Total: -11.77 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.28 Total: -46.72 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.64 -9.83 -45.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037493697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.609 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds