Wall clock time and date at job start Tue Mar 31 2020 11:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47272 * 2 1 4 4 C 1.53009 * 109.47058 * 119.99614 * 2 1 3 5 5 N 1.46499 * 109.47021 * 174.78213 * 4 2 1 6 6 C 1.46506 * 119.99835 * 277.45890 * 5 4 2 7 7 C 1.50697 * 109.46907 * 270.00486 * 6 5 4 8 8 H 1.07993 * 120.00467 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99665 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99722 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00172 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47078 * 59.99375 * 11 9 7 13 13 H 1.48496 * 109.47061 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46924 * 299.99713 * 11 9 7 15 15 C 1.34777 * 120.00153 * 97.46281 * 5 4 2 16 16 O 1.21277 * 119.99781 * 176.03891 * 15 5 4 17 17 C 1.50704 * 119.99834 * 356.31204 * 15 5 4 18 18 C 1.50700 * 109.46827 * 176.24995 * 17 15 5 19 19 C 1.34245 * 126.50144 * 265.02404 * 18 17 15 20 20 N 1.36822 * 109.92700 * 180.02562 * 19 18 17 21 21 H 0.97004 * 125.06551 * 180.02562 * 20 19 18 22 22 C 1.37691 * 109.87829 * 0.02562 * 20 19 18 23 23 C 1.39127 * 133.50694 * 180.02562 * 22 20 19 24 24 C 1.37741 * 119.78068 * 179.97438 * 23 22 20 25 25 C 1.38842 * 120.66200 * 359.97438 * 24 23 22 26 26 C 1.36620 * 120.53206 * 0.02562 * 25 24 23 27 27 C 1.39641 * 119.75986 * 359.69447 * 26 25 24 28 28 H 1.08998 * 109.46935 * 300.00339 * 1 2 3 29 29 H 1.08999 * 109.46468 * 60.00648 * 1 2 3 30 30 H 1.08998 * 109.46660 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47418 * 239.99481 * 2 1 3 32 32 H 1.09001 * 109.46311 * 294.55962 * 3 2 1 33 33 H 1.09000 * 109.46737 * 54.55015 * 3 2 1 34 34 H 1.09000 * 109.47344 * 174.55463 * 3 2 1 35 35 H 1.09001 * 109.46853 * 54.77950 * 4 2 1 36 36 H 1.09003 * 109.46695 * 294.78198 * 4 2 1 37 37 H 1.08998 * 109.46869 * 30.00340 * 6 5 4 38 38 H 1.08997 * 109.46934 * 150.00385 * 6 5 4 39 39 H 0.97002 * 119.99677 * 180.02562 * 10 9 7 40 40 H 1.08991 * 109.47054 * 296.24900 * 17 15 5 41 41 H 1.09002 * 109.47080 * 56.25349 * 17 15 5 42 42 H 1.07994 * 125.03414 * 0.02562 * 19 18 17 43 43 H 1.08003 * 120.10746 * 359.94389 * 23 22 20 44 44 H 1.07992 * 119.67127 * 179.97438 * 24 23 22 45 45 H 1.08003 * 119.73015 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.12092 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.4996 -0.8309 1.1882 6 6 4.1213 -1.9119 0.4192 7 6 4.3204 -3.1115 1.3095 8 1 4.0149 -3.0724 2.3445 9 6 4.8936 -4.2585 0.8027 10 7 5.2662 -4.3058 -0.4577 11 14 5.1398 -5.7457 1.9058 12 1 3.8246 -6.2006 2.4242 13 1 5.7701 -6.8412 1.1264 14 1 6.0199 -5.3775 3.0439 15 6 4.2705 0.0625 1.8394 16 8 5.4760 -0.0696 1.8485 17 6 3.6340 1.2221 2.5614 18 6 4.6981 2.0127 3.2782 19 6 5.0659 1.8758 4.5620 20 7 6.0624 2.7652 4.8589 21 1 6.4903 2.8540 5.7249 22 6 6.3674 3.5154 3.7453 23 6 7.2806 4.5356 3.4985 24 6 7.3503 5.1029 2.2453 25 6 6.5181 4.6666 1.2232 26 6 5.6141 3.6662 1.4436 27 6 5.5306 3.0729 2.7049 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.7584 1.9273 -0.9347 33 1 1.5992 1.9837 0.8372 34 1 3.1257 1.4441 0.0975 35 1 1.6023 -1.7183 1.2974 36 1 1.7550 -0.1561 2.1368 37 1 3.4748 -2.1823 -0.4156 38 1 5.0864 -1.5781 0.0381 39 1 5.6691 -5.1129 -0.8144 40 1 3.1272 1.8644 1.8413 41 1 2.9108 0.8465 3.2854 42 1 4.6386 1.1686 5.2573 43 1 7.9322 4.8820 4.2871 44 1 8.0595 5.8950 2.0558 45 1 6.5852 5.1223 0.2464 46 1 4.9703 3.3316 0.6437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037493697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:58 Heat of formation + Delta-G solvation = -7.054862 kcal Electronic energy + Delta-G solvation = -26460.097758 eV Core-core repulsion = 22927.902257 eV Total energy + Delta-G solvation = -3532.195501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16868 -40.65276 -37.78951 -37.58332 -35.51512 -34.04298 -33.92183 -31.31532 -30.18154 -29.61669 -28.39641 -27.50624 -26.74765 -24.69569 -23.70976 -22.63156 -21.40119 -20.85097 -19.48919 -18.68902 -18.47329 -17.92047 -17.30001 -17.01366 -16.45916 -16.15008 -16.09888 -15.54565 -15.25592 -14.94926 -14.67140 -14.45805 -14.41040 -14.37379 -13.73989 -13.69554 -13.67924 -13.21218 -13.08513 -12.85272 -12.76716 -12.59954 -12.52123 -12.49470 -12.31792 -12.17418 -11.94326 -11.77784 -11.60865 -11.58465 -11.45138 -10.68851 -10.62907 -10.29496 -9.31157 -9.07500 -8.50849 -8.19918 -6.34828 0.26423 0.76030 1.35221 1.39961 1.47141 1.70874 1.98644 2.31601 2.36334 2.60745 3.05131 3.08888 3.84415 3.91029 3.95037 4.02428 4.08898 4.15633 4.25605 4.35472 4.39014 4.47678 4.56200 4.64302 4.70242 4.76520 4.83774 4.86104 4.95126 4.97233 5.05266 5.08189 5.11396 5.12550 5.24726 5.28816 5.34492 5.46613 5.54483 5.60846 5.62390 5.73963 5.82545 5.88394 5.93312 6.10561 6.29772 6.73656 6.78472 6.92336 7.31687 7.63928 8.86640 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.004243 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.540932 B = 6598.170427 C = 7854.463911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C -0.147 4.147 4 C 0.110 3.890 5 N -0.602 5.602 6 C 0.267 3.733 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.006 3.994 10 N -0.931 5.931 11 Si 0.967 3.033 12 H -0.258 1.258 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.500 3.500 16 O -0.592 6.592 17 C -0.064 4.064 18 C -0.180 4.180 19 C 0.063 3.937 20 N -0.585 5.585 21 H 0.430 0.570 22 C 0.074 3.926 23 C -0.135 4.135 24 C -0.108 4.108 25 C -0.154 4.154 26 C -0.094 4.094 27 C -0.119 4.119 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.017 0.983 38 H -0.012 1.012 39 H 0.266 0.734 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.195 0.805 43 H 0.145 0.855 44 H 0.153 0.847 45 H 0.139 0.861 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.039 18.841 9.119 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.204 4.204 4 C -0.012 4.012 5 N -0.332 5.332 6 C 0.146 3.854 7 C -0.577 4.577 8 H 0.072 0.928 9 C -0.193 4.193 10 N -0.571 5.571 11 Si 0.791 3.209 12 H -0.182 1.182 13 H -0.204 1.204 14 H -0.204 1.204 15 C 0.290 3.710 16 O -0.473 6.473 17 C -0.104 4.104 18 C -0.187 4.187 19 C -0.064 4.064 20 N -0.189 5.189 21 H 0.269 0.731 22 C -0.033 4.033 23 C -0.155 4.155 24 C -0.127 4.127 25 C -0.173 4.173 26 C -0.112 4.112 27 C -0.124 4.124 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.035 0.965 38 H 0.006 0.994 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.212 0.788 43 H 0.163 0.837 44 H 0.171 0.829 45 H 0.156 0.844 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.309 18.631 9.124 21.683 hybrid contribution 0.812 -1.389 0.197 1.621 sum -5.498 17.242 9.321 20.356 Atomic orbital electron populations 1.21707 0.92188 1.02196 1.03127 1.21502 0.97623 0.96578 0.97573 1.22019 0.99752 0.95564 1.03055 1.21855 0.78546 1.01441 0.99369 1.48193 1.07416 1.27902 1.49733 1.18579 0.91717 0.84417 0.90719 1.21692 1.40588 0.98386 0.97031 0.92816 1.25876 0.94814 1.02010 0.96584 1.70063 1.42396 1.29551 1.15076 0.85484 0.78978 0.78082 0.78358 1.18237 1.20428 1.20450 1.21340 0.86828 0.83818 0.79058 1.90641 1.17343 1.76716 1.62601 1.20360 0.96546 0.93224 1.00236 1.19902 1.03402 1.01178 0.94247 1.21993 0.91997 0.95176 0.97262 1.41622 1.33717 1.31816 1.11771 0.73078 1.18555 0.99774 0.97319 0.87653 1.20370 0.99322 0.96775 0.99081 1.21150 0.99374 1.00339 0.91795 1.20913 0.97356 0.98546 1.00515 1.20433 0.99488 0.96400 0.94917 1.19376 0.99453 0.99027 0.94524 0.90465 0.91708 0.92836 0.93827 0.91774 0.89845 0.95041 0.91469 0.87682 0.96479 0.99371 0.92541 0.85982 0.86070 0.78771 0.83742 0.82897 0.84351 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.19 71.98 0.66 -1.96 16 2 C -0.11 -3.06 3.11 -10.79 -0.03 -3.09 16 3 C -0.15 -3.54 7.55 71.98 0.54 -3.00 16 4 C 0.11 3.48 4.89 86.38 0.42 3.90 16 5 N -0.60 -26.21 2.22 -826.13 -1.83 -28.04 16 6 C 0.27 15.00 5.15 85.63 0.44 15.44 16 7 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 8 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 9 C 0.01 0.34 5.46 84.66 0.46 0.80 16 10 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 11 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 15 C 0.50 21.69 6.54 87.66 0.57 22.26 16 16 O -0.59 -32.76 15.66 -3.02 -0.05 -32.80 16 17 C -0.06 -1.93 4.65 29.10 0.14 -1.79 16 18 C -0.18 -5.69 4.81 -18.62 -0.09 -5.78 16 19 C 0.06 1.63 11.73 83.00 0.97 2.61 16 20 N -0.59 -13.71 6.07 -187.62 -1.14 -14.85 16 21 H 0.43 6.68 8.96 -92.70 -0.83 5.85 16 22 C 0.07 2.09 7.28 39.03 0.28 2.38 16 23 C -0.14 -3.14 10.08 22.37 0.23 -2.91 16 24 C -0.11 -2.39 10.01 22.30 0.22 -2.17 16 25 C -0.15 -3.95 9.97 22.04 0.22 -3.73 16 26 C -0.09 -2.92 10.05 22.23 0.22 -2.70 16 27 C -0.12 -3.92 6.35 -20.20 -0.13 -4.05 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 1.46 7.94 -2.39 -0.02 1.44 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.53 7.18 -2.39 -0.02 1.51 16 34 H 0.03 0.94 5.63 -2.39 -0.01 0.93 16 35 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 36 H 0.11 2.49 6.09 -2.39 -0.01 2.48 16 37 H 0.02 0.99 7.87 -2.39 -0.02 0.97 16 38 H -0.01 -0.78 7.48 -2.39 -0.02 -0.80 16 39 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.12 3.20 4.24 -2.39 -0.01 3.19 16 41 H 0.12 2.80 7.09 -2.39 -0.02 2.78 16 42 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 44 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 46 H 0.11 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -83.46 373.89 4.83 -78.64 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.15 Total: 22.37 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 5.38 Total: -15.49 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -2.69 Total: -100.68 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.05 Total: -32.80 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -83.46 4.83 -78.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037493697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.581 kcal (2) G-P(sol) polarization free energy of solvation -83.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds