Wall clock time and date at job start Tue Mar 31 2020 11:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53000 * 109.46793 * 2 1 4 4 C 1.50693 * 109.47210 * 119.99997 * 2 1 3 5 5 O 1.21286 * 119.99971 * 342.74246 * 4 2 1 6 6 N 1.34774 * 119.99874 * 162.73933 * 4 2 1 7 7 C 1.44689 * 118.54349 * 185.35674 * 6 4 2 8 8 C 1.54942 * 109.52762 * 269.10032 * 7 6 4 9 9 C 1.47542 * 109.73676 * 290.52880 * 8 7 6 10 10 N 1.46271 * 114.37500 * 62.21653 * 9 8 7 11 11 C 1.46894 * 110.99945 * 148.55663 * 10 9 8 12 12 C 1.53004 * 109.47570 * 64.51870 * 11 10 9 13 13 C 1.52996 * 109.47204 * 181.03539 * 12 11 10 14 14 S 1.81001 * 109.46839 * 179.97438 * 13 12 11 15 15 C 1.76205 * 100.00126 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99430 * 0.02562 * 15 14 13 17 17 C 1.38791 * 120.00124 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00357 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99937 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47060 * 60.00057 * 19 17 15 21 21 H 1.48501 * 109.46965 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47004 * 300.00286 * 19 17 15 23 23 C 1.44767 * 110.63961 * 272.25212 * 10 9 8 24 24 C 1.47777 * 118.55136 * 5.38476 * 6 4 2 25 25 H 1.08991 * 109.47102 * 299.99714 * 1 2 3 26 26 H 1.08995 * 109.46738 * 60.00095 * 1 2 3 27 27 H 1.08999 * 109.46788 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47102 * 240.00286 * 2 1 3 29 29 H 1.09006 * 109.47097 * 52.08916 * 3 2 1 30 30 H 1.09001 * 109.47163 * 172.08439 * 3 2 1 31 31 H 1.08999 * 109.47542 * 292.09176 * 3 2 1 32 32 H 1.08999 * 109.45644 * 149.08528 * 7 6 4 33 33 H 1.08990 * 109.45150 * 29.12013 * 7 6 4 34 34 H 1.08995 * 109.42954 * 170.44605 * 8 7 6 35 35 H 1.09008 * 109.38266 * 50.57853 * 8 7 6 36 36 H 1.08994 * 108.50210 * 300.95474 * 9 8 7 37 37 H 1.09003 * 108.38085 * 183.39182 * 9 8 7 38 38 H 1.09008 * 109.46892 * 304.51602 * 11 10 9 39 39 H 1.09002 * 109.47451 * 184.52111 * 11 10 9 40 40 H 1.09004 * 109.46880 * 301.03242 * 12 11 10 41 41 H 1.08997 * 109.46580 * 61.02891 * 12 11 10 42 42 H 1.09004 * 109.46960 * 299.99654 * 13 12 11 43 43 H 1.08992 * 109.47664 * 59.99719 * 13 12 11 44 44 H 0.96995 * 120.00760 * 179.97438 * 18 17 15 45 45 H 1.08999 * 109.43017 * 214.22813 * 23 10 9 46 46 H 1.09001 * 109.43596 * 334.09641 * 23 10 9 47 47 H 1.08998 * 109.06077 * 258.62292 * 24 6 4 48 48 H 1.09004 * 109.05519 * 17.55143 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2889 -0.8936 2.1709 6 7 3.3080 -1.1422 1.2856 7 6 3.7247 -1.9224 2.4306 8 6 4.2797 -0.9782 3.5266 9 6 5.5630 -0.4006 3.0835 10 7 5.4696 0.4260 1.8803 11 6 6.4675 1.5037 1.9033 12 6 7.8724 0.8991 1.8610 13 6 8.9120 2.0205 1.9110 14 16 10.5739 1.3052 1.8616 15 6 11.5422 2.7757 1.9294 16 1 11.0574 3.7394 1.9828 17 6 12.9277 2.6956 1.9152 18 7 13.5185 1.5211 1.8506 19 14 13.9542 4.2546 1.9877 20 1 13.6502 4.9895 3.2417 21 1 15.3959 3.8998 1.9584 22 1 13.6325 5.1139 0.8200 23 6 5.6110 -0.3866 0.6906 24 6 4.2191 -0.7973 0.1745 25 1 -0.3633 0.5137 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8899 29 1 1.5658 1.9956 0.8108 30 1 3.1208 1.4459 0.1415 31 1 1.7968 1.9140 -0.9522 32 1 4.5020 -2.6242 2.1282 33 1 2.8710 -2.4737 2.8244 34 1 4.4343 -1.5418 4.4465 35 1 3.5647 -0.1758 3.7087 36 1 6.2606 -1.2154 2.8899 37 1 5.9626 0.2105 3.8928 38 1 6.3506 2.0877 2.8163 39 1 6.3240 2.1504 1.0376 40 1 8.0094 0.2383 2.7169 41 1 7.9954 0.3303 0.9394 42 1 8.7749 2.6814 1.0550 43 1 8.7889 2.5894 2.8325 44 1 14.4867 1.4651 1.8403 45 1 6.1293 0.1848 -0.0793 46 1 6.1879 -1.2804 0.9283 47 1 4.3234 -1.6614 -0.4816 48 1 3.7916 0.0295 -0.3928 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:57 Heat of formation + Delta-G solvation = -44.253216 kcal Electronic energy + Delta-G solvation = -24745.003755 eV Core-core repulsion = 21346.639164 eV Total energy + Delta-G solvation = -3398.364592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69447 -38.78543 -35.67225 -34.97635 -33.12151 -32.49129 -32.26108 -28.64253 -27.52986 -26.63825 -25.70031 -24.65867 -23.67751 -22.24276 -21.50830 -19.87313 -18.72498 -17.60079 -17.47550 -16.66054 -15.92688 -15.50777 -15.40316 -14.84340 -14.83138 -14.65986 -14.36164 -14.05278 -13.68265 -13.50325 -13.21832 -13.06627 -12.77931 -12.54857 -12.44167 -12.17626 -12.09018 -11.96595 -11.56928 -11.54147 -11.43237 -11.28242 -11.19721 -11.07270 -11.00167 -10.89707 -10.74511 -10.73416 -10.39341 -9.77167 -9.70979 -9.08854 -8.71429 -8.43507 -8.21805 -6.58136 -6.26409 -3.97440 2.53703 2.90050 3.18939 3.20512 3.25212 3.52638 3.80890 4.18903 4.26716 4.60707 4.68778 4.73851 4.79181 4.80284 4.91394 5.02413 5.09712 5.14689 5.23339 5.28103 5.33805 5.37686 5.41020 5.44355 5.45461 5.53737 5.57079 5.59670 5.60645 5.66143 5.71030 5.74303 5.82930 5.92628 5.98689 6.01459 6.03627 6.18074 6.25705 6.43529 6.53123 6.64639 7.02337 7.07751 7.25292 7.56583 8.11498 8.32721 9.19860 10.81719 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.002376 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.805466 B =11780.281649 C =12194.520836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.518 3.482 5 O -0.546 6.546 6 N -0.593 5.593 7 C 0.119 3.881 8 C -0.130 4.130 9 C 0.056 3.944 10 N -0.529 5.529 11 C 0.061 3.939 12 C -0.133 4.133 13 C -0.109 4.109 14 S -0.137 6.137 15 C -0.516 4.516 16 H 0.072 0.928 17 C 0.071 3.929 18 N -0.870 5.870 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.039 3.961 24 C 0.106 3.894 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.268 0.732 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.393 -5.094 -4.351 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 C -0.205 4.205 4 C 0.306 3.694 5 O -0.423 6.423 6 N -0.325 5.325 7 C -0.005 4.005 8 C -0.169 4.169 9 C -0.072 4.072 10 N -0.251 5.251 11 C -0.068 4.068 12 C -0.173 4.173 13 C -0.259 4.259 14 S 0.091 5.909 15 C -0.664 4.664 16 H 0.090 0.910 17 C -0.138 4.138 18 N -0.506 5.506 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.091 4.091 24 C -0.017 4.017 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.710 -6.183 -3.916 23.860 hybrid contribution 1.411 1.874 0.115 2.349 sum -21.299 -4.309 -3.801 22.061 Atomic orbital electron populations 1.21623 0.92793 1.02343 1.02252 1.21305 0.98027 0.97731 0.96578 1.21892 1.02405 0.93605 1.02641 1.20689 0.81548 0.78260 0.88917 1.90664 1.56371 1.56727 1.38572 1.47567 1.10039 1.53122 1.21750 1.21410 0.99935 0.93030 0.86095 1.21338 0.97831 0.99806 0.97943 1.21002 0.96935 0.96307 0.92978 1.61110 1.49610 1.12727 1.01674 1.22422 0.88452 0.93070 1.02898 1.21987 0.94261 0.98474 1.02532 1.23181 0.99723 1.00154 1.02808 1.84614 0.94648 1.15004 1.96652 1.22635 0.93074 0.92275 1.58454 0.91010 1.25018 0.96996 0.97206 0.94573 1.70007 1.10224 1.23252 1.47091 0.86221 0.78576 0.81844 0.78883 1.19916 1.20803 1.19914 1.22380 0.95324 0.97248 0.94120 1.22332 0.90655 1.00537 0.88154 0.91662 0.92153 0.92542 0.89233 0.91975 0.90728 0.91683 0.91183 0.90163 0.90583 0.90887 0.94307 0.91415 0.90709 0.90614 0.91676 0.91618 0.92141 0.92191 0.92239 0.89602 0.93196 0.91749 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.62 37.16 0.32 -0.76 16 2 C -0.12 -0.95 2.39 -91.77 -0.22 -1.17 16 3 C -0.15 -1.14 8.70 37.16 0.32 -0.81 16 4 C 0.52 5.84 6.81 -10.99 -0.07 5.77 16 5 O -0.55 -8.09 15.47 5.55 0.09 -8.00 16 6 N -0.59 -5.86 2.54 -172.22 -0.44 -6.30 16 7 C 0.12 1.17 5.40 -3.99 -0.02 1.15 16 8 C -0.13 -1.33 6.02 -28.34 -0.17 -1.50 16 9 C 0.06 0.60 3.84 -6.80 -0.03 0.57 16 10 N -0.53 -5.69 4.37 -239.59 -1.05 -6.73 16 11 C 0.06 0.73 4.98 -3.83 -0.02 0.71 16 12 C -0.13 -1.97 4.72 -26.73 -0.13 -2.10 16 13 C -0.11 -2.11 5.67 37.16 0.21 -1.90 16 14 S -0.14 -3.52 21.44 -107.50 -2.30 -5.83 16 15 C -0.52 -14.65 9.50 30.94 0.29 -14.35 16 16 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 17 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 18 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 19 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.04 0.36 4.34 -4.44 -0.02 0.34 16 24 C 0.11 0.84 5.73 -2.81 -0.02 0.83 16 25 H 0.06 0.62 7.92 -51.93 -0.41 0.21 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.58 7.33 -51.93 -0.38 0.20 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 30 H 0.07 0.61 6.00 -51.93 -0.31 0.30 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.08 0.86 7.33 -51.93 -0.38 0.48 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 36 H 0.04 0.43 7.02 -51.93 -0.36 0.06 16 37 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 38 H 0.07 0.93 7.91 -51.92 -0.41 0.51 16 39 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.06 1.02 7.19 -51.93 -0.37 0.64 16 41 H 0.07 0.98 6.91 -51.93 -0.36 0.62 16 42 H 0.06 1.15 8.14 -51.91 -0.42 0.73 16 43 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 45 H 0.09 0.78 7.11 -51.93 -0.37 0.41 16 46 H 0.05 0.49 7.14 -51.93 -0.37 0.12 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.64 4.06 -51.93 -0.21 0.43 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -32.51 379.15 -10.44 -42.95 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -8.52 Total: -1.73 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 0.36 Total: -11.33 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.75 Total: -38.10 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.51 -10.44 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.299 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds