Wall clock time and date at job start Tue Mar 31 2020 11:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53000 * 109.46793 * 2 1 4 4 C 1.50693 * 109.47210 * 119.99997 * 2 1 3 5 5 O 1.21286 * 119.99971 * 342.74246 * 4 2 1 6 6 N 1.34774 * 119.99874 * 162.73933 * 4 2 1 7 7 C 1.44689 * 118.54349 * 185.35674 * 6 4 2 8 8 C 1.54942 * 109.52762 * 269.10032 * 7 6 4 9 9 C 1.47542 * 109.73676 * 290.52880 * 8 7 6 10 10 N 1.46271 * 114.37500 * 62.21653 * 9 8 7 11 11 C 1.46894 * 110.99945 * 148.55663 * 10 9 8 12 12 C 1.53004 * 109.47570 * 64.51870 * 11 10 9 13 13 C 1.52996 * 109.47204 * 181.03539 * 12 11 10 14 14 S 1.81001 * 109.46839 * 179.97438 * 13 12 11 15 15 C 1.76205 * 100.00126 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99430 * 0.02562 * 15 14 13 17 17 C 1.38791 * 120.00124 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00357 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99937 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47060 * 60.00057 * 19 17 15 21 21 H 1.48501 * 109.46965 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47004 * 300.00286 * 19 17 15 23 23 C 1.44767 * 110.63961 * 272.25212 * 10 9 8 24 24 C 1.47777 * 118.55136 * 5.38476 * 6 4 2 25 25 H 1.08991 * 109.47102 * 299.99714 * 1 2 3 26 26 H 1.08995 * 109.46738 * 60.00095 * 1 2 3 27 27 H 1.08999 * 109.46788 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47102 * 240.00286 * 2 1 3 29 29 H 1.09006 * 109.47097 * 52.08916 * 3 2 1 30 30 H 1.09001 * 109.47163 * 172.08439 * 3 2 1 31 31 H 1.08999 * 109.47542 * 292.09176 * 3 2 1 32 32 H 1.08999 * 109.45644 * 149.08528 * 7 6 4 33 33 H 1.08990 * 109.45150 * 29.12013 * 7 6 4 34 34 H 1.08995 * 109.42954 * 170.44605 * 8 7 6 35 35 H 1.09008 * 109.38266 * 50.57853 * 8 7 6 36 36 H 1.08994 * 108.50210 * 300.95474 * 9 8 7 37 37 H 1.09003 * 108.38085 * 183.39182 * 9 8 7 38 38 H 1.09008 * 109.46892 * 304.51602 * 11 10 9 39 39 H 1.09002 * 109.47451 * 184.52111 * 11 10 9 40 40 H 1.09004 * 109.46880 * 301.03242 * 12 11 10 41 41 H 1.08997 * 109.46580 * 61.02891 * 12 11 10 42 42 H 1.09004 * 109.46960 * 299.99654 * 13 12 11 43 43 H 1.08992 * 109.47664 * 59.99719 * 13 12 11 44 44 H 0.96995 * 120.00760 * 179.97438 * 18 17 15 45 45 H 1.08999 * 109.43017 * 214.22813 * 23 10 9 46 46 H 1.09001 * 109.43596 * 334.09641 * 23 10 9 47 47 H 1.08998 * 109.06077 * 258.62292 * 24 6 4 48 48 H 1.09004 * 109.05519 * 17.55143 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2889 -0.8936 2.1709 6 7 3.3080 -1.1422 1.2856 7 6 3.7247 -1.9224 2.4306 8 6 4.2797 -0.9782 3.5266 9 6 5.5630 -0.4006 3.0835 10 7 5.4696 0.4260 1.8803 11 6 6.4675 1.5037 1.9033 12 6 7.8724 0.8991 1.8610 13 6 8.9120 2.0205 1.9110 14 16 10.5739 1.3052 1.8616 15 6 11.5422 2.7757 1.9294 16 1 11.0574 3.7394 1.9828 17 6 12.9277 2.6956 1.9152 18 7 13.5185 1.5211 1.8506 19 14 13.9542 4.2546 1.9877 20 1 13.6502 4.9895 3.2417 21 1 15.3959 3.8998 1.9584 22 1 13.6325 5.1139 0.8200 23 6 5.6110 -0.3866 0.6906 24 6 4.2191 -0.7973 0.1745 25 1 -0.3633 0.5137 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8899 29 1 1.5658 1.9956 0.8108 30 1 3.1208 1.4459 0.1415 31 1 1.7968 1.9140 -0.9522 32 1 4.5020 -2.6242 2.1282 33 1 2.8710 -2.4737 2.8244 34 1 4.4343 -1.5418 4.4465 35 1 3.5647 -0.1758 3.7087 36 1 6.2606 -1.2154 2.8899 37 1 5.9626 0.2105 3.8928 38 1 6.3506 2.0877 2.8163 39 1 6.3240 2.1504 1.0376 40 1 8.0094 0.2383 2.7169 41 1 7.9954 0.3303 0.9394 42 1 8.7749 2.6814 1.0550 43 1 8.7889 2.5894 2.8325 44 1 14.4867 1.4651 1.8403 45 1 6.1293 0.1848 -0.0793 46 1 6.1879 -1.2804 0.9283 47 1 4.3234 -1.6614 -0.4816 48 1 3.7916 0.0295 -0.3928 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074990152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:56 Heat of formation + Delta-G solvation = -64.016513 kcal Electronic energy + Delta-G solvation = -24745.860756 eV Core-core repulsion = 21346.639164 eV Total energy + Delta-G solvation = -3399.221592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51691 -39.69616 -36.60949 -35.71474 -34.62128 -34.04315 -33.32549 -29.57756 -28.18210 -27.84496 -27.41119 -25.77127 -24.45111 -23.38912 -22.27564 -20.85572 -19.56988 -19.48631 -18.33821 -17.50447 -16.91258 -16.90225 -16.46400 -16.29308 -15.85268 -15.76432 -15.58536 -15.04052 -14.92198 -14.47768 -14.27547 -13.95981 -13.75635 -13.54428 -13.46383 -13.28178 -13.05830 -12.94994 -12.85435 -12.80882 -12.65068 -12.50339 -12.42265 -12.18190 -11.98705 -11.91972 -11.77703 -11.68397 -11.55471 -11.50970 -11.14204 -10.57980 -10.35797 -9.52480 -9.21972 -8.67589 -8.38183 -6.14456 1.30934 1.39860 1.46850 1.70417 1.75649 2.14864 2.28017 2.93588 2.96032 3.30870 3.55998 3.85727 3.93601 3.98694 4.01080 4.04036 4.11684 4.14676 4.23289 4.34399 4.38625 4.48393 4.52166 4.63874 4.64668 4.69057 4.76016 4.80224 4.81181 4.83233 4.91215 4.94362 4.95671 5.00127 5.04933 5.11362 5.14237 5.28106 5.31901 5.34775 5.38627 5.41258 5.75277 6.10628 6.16933 6.21711 6.46965 7.04162 7.29017 8.70714 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.002376 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.805466 B =11780.281649 C =12194.520836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.112 4.112 3 C -0.142 4.142 4 C 0.509 3.491 5 O -0.591 6.591 6 N -0.592 5.592 7 C 0.118 3.882 8 C -0.122 4.122 9 C 0.058 3.942 10 N -0.528 5.528 11 C 0.073 3.927 12 C -0.118 4.118 13 C -0.085 4.085 14 S -0.203 6.203 15 C -0.538 4.538 16 H 0.072 0.928 17 C 0.015 3.985 18 N -0.907 5.907 19 Si 0.992 3.008 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.263 1.263 23 C 0.035 3.965 24 C 0.106 3.894 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.116 0.884 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.271 0.729 45 H 0.094 0.906 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.783 -4.177 -5.876 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.133 4.133 3 C -0.200 4.200 4 C 0.299 3.701 5 O -0.472 6.472 6 N -0.322 5.322 7 C -0.006 4.006 8 C -0.161 4.161 9 C -0.070 4.070 10 N -0.250 5.250 11 C -0.057 4.057 12 C -0.158 4.158 13 C -0.234 4.234 14 S 0.026 5.974 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.190 4.190 18 N -0.544 5.544 19 Si 0.814 3.186 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.188 1.188 23 C -0.094 4.094 24 C -0.016 4.016 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.095 -5.273 -5.461 24.310 hybrid contribution 1.463 1.538 0.602 2.206 sum -21.632 -3.735 -4.859 22.484 Atomic orbital electron populations 1.21612 0.92892 1.01950 1.02374 1.21372 0.97963 0.97999 0.95930 1.21857 1.01897 0.92985 1.03240 1.21311 0.81600 0.77870 0.89358 1.90641 1.57585 1.58577 1.40359 1.47697 1.10086 1.52413 1.22046 1.21405 0.99837 0.93138 0.86207 1.21251 0.96858 0.99236 0.98754 1.20987 0.97014 0.96153 0.92854 1.61180 1.48595 1.12949 1.02282 1.22293 0.86569 0.93401 1.03394 1.21910 0.94638 0.96938 1.02309 1.23132 0.96167 1.01256 1.02853 1.84610 0.99536 1.16442 1.96817 1.23000 0.94049 0.92851 1.58646 0.90958 1.26057 0.98292 1.00829 0.93819 1.70140 1.10655 1.25660 1.47931 0.85092 0.76759 0.77391 0.79356 1.19049 1.20040 1.18806 1.22478 0.96337 0.96979 0.93575 1.22484 0.89390 1.02078 0.87613 0.93759 0.89738 0.93229 0.86617 0.93691 0.91015 0.89376 0.89579 0.91408 0.89463 0.93285 0.94229 0.92247 0.91001 0.89307 0.92523 0.91324 0.91607 0.92371 0.91994 0.88765 0.93489 0.89483 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.62 71.99 0.62 -1.36 16 2 C -0.11 -1.63 2.39 -11.54 -0.03 -1.66 16 3 C -0.14 -1.87 8.70 71.98 0.63 -1.24 16 4 C 0.51 11.09 6.81 87.65 0.60 11.69 16 5 O -0.59 -17.89 15.47 -3.05 -0.05 -17.94 16 6 N -0.59 -10.83 2.54 -817.18 -2.07 -12.90 16 7 C 0.12 2.24 5.40 87.38 0.47 2.71 16 8 C -0.12 -2.46 6.02 29.55 0.18 -2.28 16 9 C 0.06 1.19 3.84 84.72 0.33 1.52 16 10 N -0.53 -10.42 4.37 -911.93 -3.99 -14.41 16 11 C 0.07 1.61 4.98 86.31 0.43 2.04 16 12 C -0.12 -3.35 4.72 30.59 0.14 -3.21 16 13 C -0.08 -3.19 5.67 71.98 0.41 -2.79 16 14 S -0.20 -10.52 21.44 -56.49 -1.21 -11.73 16 15 C -0.54 -30.64 9.50 67.95 0.65 -30.00 16 16 H 0.07 3.96 7.80 -2.91 -0.02 3.94 16 17 C 0.01 0.84 5.49 84.86 0.47 1.31 16 18 N -0.91 -54.32 13.22 21.65 0.29 -54.03 16 19 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 C 0.04 0.57 4.34 87.05 0.38 0.95 16 24 C 0.11 1.38 5.73 86.48 0.50 1.87 16 25 H 0.04 0.85 7.92 -2.39 -0.02 0.83 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.12 1.10 7.33 -2.39 -0.02 1.08 16 29 H 0.04 0.75 8.13 -2.38 -0.02 0.73 16 30 H 0.07 0.99 6.00 -2.39 -0.01 0.97 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 33 H 0.07 1.47 7.33 -2.39 -0.02 1.45 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.04 0.82 7.02 -2.39 -0.02 0.80 16 37 H 0.06 1.33 7.53 -2.39 -0.02 1.31 16 38 H 0.07 1.66 7.91 -2.38 -0.02 1.64 16 39 H 0.09 1.78 8.08 -2.39 -0.02 1.76 16 40 H 0.06 1.72 7.19 -2.38 -0.02 1.70 16 41 H 0.07 1.93 6.91 -2.39 -0.02 1.92 16 42 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.06 2.21 8.14 -2.40 -0.02 2.19 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.09 1.40 7.11 -2.39 -0.02 1.39 16 46 H 0.05 0.80 7.14 -2.39 -0.02 0.79 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 48 H 0.11 1.11 4.06 -2.38 -0.01 1.10 16 Total: -1.00 -71.84 379.15 1.67 -70.17 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.91 Total: 15.85 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 5.76 Total: -20.44 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -5.77 Total: -81.34 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.05 Total: -17.94 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -10.52 SS G_CDS: -1.21 Total: -11.73 kcal Total: -71.84 1.67 -70.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.155 kcal (2) G-P(sol) polarization free energy of solvation -71.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds