Wall clock time and date at job start Tue Mar 31 2020 11:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47034 * 2 1 4 4 C 1.52997 * 109.47047 * 240.00225 * 2 1 3 5 5 C 1.52995 * 109.47110 * 119.99841 * 2 1 3 6 6 N 1.46500 * 109.47157 * 63.50996 * 5 2 1 7 7 C 1.46501 * 120.00079 * 269.05938 * 6 5 2 8 8 C 1.50705 * 109.46824 * 279.33040 * 7 6 5 9 9 H 1.07996 * 119.99613 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99834 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99460 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99947 * 0.02562 * 10 8 7 13 13 H 1.48490 * 109.47411 * 89.99838 * 12 10 8 14 14 H 1.48500 * 109.46776 * 209.99794 * 12 10 8 15 15 H 1.48500 * 109.47020 * 329.99275 * 12 10 8 16 16 C 1.34781 * 119.99664 * 89.05290 * 6 5 2 17 17 O 1.21589 * 119.99981 * 6.57867 * 16 6 5 18 18 C 1.47581 * 119.99849 * 186.58035 * 16 6 5 19 19 C 1.40242 * 119.83402 * 329.09842 * 18 16 6 20 20 C 1.36194 * 120.37965 * 180.22349 * 19 18 16 21 21 C 1.39921 * 119.95750 * 359.80665 * 20 19 18 22 22 C 1.46253 * 133.83628 * 179.97438 * 21 20 19 23 23 C 1.34452 * 107.03436 * 179.97438 * 22 21 20 24 24 N 1.36562 * 109.97479 * 0.02562 * 23 22 21 25 25 H 0.97000 * 125.06954 * 180.02562 * 24 23 22 26 26 C 1.37823 * 109.86300 * 359.97438 * 24 23 22 27 27 C 1.38678 * 133.37688 * 180.02562 * 26 24 23 28 28 H 1.09000 * 109.46859 * 300.00314 * 1 2 3 29 29 H 1.09004 * 109.47325 * 59.99717 * 1 2 3 30 30 H 1.08999 * 109.47228 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46962 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47295 * 300.00301 * 3 2 1 33 33 H 1.09004 * 109.46883 * 59.99880 * 3 2 1 34 34 H 1.09005 * 109.46708 * 305.37110 * 4 2 1 35 35 H 1.09001 * 109.47491 * 65.37225 * 4 2 1 36 36 H 1.08998 * 109.47063 * 185.37273 * 4 2 1 37 37 H 1.09001 * 109.47285 * 303.51151 * 5 2 1 38 38 H 1.08998 * 109.47206 * 183.50911 * 5 2 1 39 39 H 1.08995 * 109.47289 * 39.33390 * 7 6 5 40 40 H 1.09004 * 109.46779 * 159.33740 * 7 6 5 41 41 H 0.96998 * 119.99513 * 180.02562 * 11 10 8 42 42 H 1.07999 * 119.80733 * 0.02562 * 19 18 16 43 43 H 1.07997 * 120.01989 * 179.83069 * 20 19 18 44 44 H 1.07999 * 126.48339 * 0.02562 * 22 21 20 45 45 H 1.07997 * 125.01314 * 180.02562 * 23 22 21 46 46 H 1.08003 * 120.16424 * 359.94441 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.6220 -2.1247 1.2077 7 6 0.3519 -2.5290 1.8159 8 6 0.5336 -2.6810 3.3042 9 1 1.4985 -2.4946 3.7522 10 6 -0.5322 -3.0570 4.0940 11 7 -0.3737 -3.1891 5.3928 12 14 -2.2011 -3.3786 3.3191 13 1 -2.3012 -4.8094 2.9350 14 1 -3.2713 -3.0522 4.2955 15 1 -2.3578 -2.5295 2.1108 16 6 2.4057 -3.0438 0.6099 17 8 3.5116 -2.7331 0.2114 18 6 1.9216 -4.4275 0.4391 19 6 1.0372 -4.9781 1.3779 20 6 0.5870 -6.2554 1.2336 21 6 1.0042 -7.0240 0.1414 22 6 0.7228 -8.3886 -0.3035 23 6 1.4154 -8.5833 -1.4393 24 7 2.1170 -7.4555 -1.7570 25 1 2.6900 -7.3558 -2.5333 26 6 1.8887 -6.4798 -0.8107 27 6 2.3415 -5.1782 -0.6564 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6002 -1.7174 -1.2986 35 1 1.7574 -0.1548 -2.1366 36 1 3.1257 -0.8053 -1.2024 37 1 1.6262 -0.2450 2.1381 38 1 3.1282 -0.6671 1.2812 39 1 -0.4039 -1.7691 1.6178 40 1 0.0316 -3.4799 1.3900 41 1 -1.1234 -3.4540 5.9484 42 1 0.7138 -4.3870 2.2219 43 1 -0.0918 -6.6745 1.9615 44 1 0.0797 -9.1041 0.1871 45 1 1.4167 -9.4967 -2.0154 46 1 3.0203 -4.7504 -1.3794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104627367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:27 Heat of formation + Delta-G solvation = 41.419487 kcal Electronic energy + Delta-G solvation = -27249.780237 eV Core-core repulsion = 23719.686741 eV Total energy + Delta-G solvation = -3530.093496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03578 -39.70056 -37.03339 -36.08513 -34.47110 -32.43560 -31.66723 -29.53586 -28.78182 -28.17862 -26.98553 -26.82771 -25.77665 -22.96343 -22.48732 -21.61113 -20.52412 -19.22824 -18.29427 -17.62541 -17.13454 -16.58853 -15.74703 -15.24004 -15.00943 -14.41989 -14.26922 -14.16769 -13.90943 -13.70752 -13.49312 -13.18351 -13.12704 -12.84385 -12.78948 -12.50706 -12.22697 -12.02229 -11.87659 -11.32882 -11.22914 -11.17768 -11.08519 -10.89955 -10.76143 -10.67269 -10.43859 -10.24861 -10.17151 -9.84989 -9.61208 -9.47884 -9.06692 -8.78152 -7.83812 -7.69259 -7.42196 -6.28564 -4.30412 1.20830 1.95370 2.78489 3.15723 3.20495 3.24330 3.26659 3.56556 3.89494 4.21459 4.38474 4.91387 5.01007 5.04817 5.15678 5.16587 5.25280 5.32934 5.50662 5.60306 5.76464 5.85043 5.85956 5.89114 5.89893 6.06658 6.11422 6.17077 6.17524 6.24261 6.30679 6.34508 6.36469 6.43243 6.46505 6.53958 6.68787 6.75760 6.80495 6.87514 6.94989 7.02655 7.14085 7.32333 7.43223 7.53300 7.64034 8.10765 8.40875 8.79735 8.94092 9.29501 10.83006 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.006293 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.345550 B = 4448.318228 C = 6444.752351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.133 4.133 5 C 0.130 3.870 6 N -0.577 5.577 7 C 0.172 3.828 8 C -0.542 4.542 9 H 0.082 0.918 10 C 0.081 3.919 11 N -0.881 5.881 12 Si 0.859 3.141 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.260 1.260 16 C 0.563 3.437 17 O -0.564 6.564 18 C -0.105 4.105 19 C -0.129 4.129 20 C -0.094 4.094 21 C -0.090 4.090 22 C -0.211 4.211 23 C 0.048 3.952 24 N -0.597 5.597 25 H 0.412 0.588 26 C 0.072 3.928 27 C -0.078 4.078 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.268 0.732 42 H 0.195 0.805 43 H 0.123 0.877 44 H 0.144 0.856 45 H 0.166 0.834 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 -3.470 -13.586 14.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.190 4.190 5 C 0.007 3.993 6 N -0.305 5.305 7 C 0.051 3.949 8 C -0.580 4.580 9 H 0.100 0.900 10 C -0.124 4.124 11 N -0.517 5.517 12 Si 0.684 3.316 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.185 1.185 16 C 0.352 3.648 17 O -0.446 6.446 18 C -0.109 4.109 19 C -0.147 4.147 20 C -0.112 4.112 21 C -0.094 4.094 22 C -0.237 4.237 23 C -0.079 4.079 24 N -0.200 5.200 25 H 0.248 0.752 26 C -0.033 4.033 27 C -0.099 4.099 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.211 0.789 43 H 0.141 0.859 44 H 0.161 0.839 45 H 0.184 0.816 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.154 -3.334 -13.687 14.134 hybrid contribution -0.787 -0.324 -0.540 1.008 sum 0.367 -3.659 -14.227 14.694 Atomic orbital electron populations 1.21997 0.94692 1.02403 1.00957 1.20962 0.95971 0.95253 0.96411 1.21780 1.00888 0.95241 1.01433 1.21842 1.01707 0.99640 0.95832 1.21400 1.00131 0.80960 0.96808 1.47637 1.22025 1.06837 1.53971 1.20863 0.81958 0.97748 0.94311 1.21344 0.99078 1.47906 0.89670 0.89990 1.24889 0.98447 0.94377 0.94660 1.69888 1.32080 1.45572 1.04194 0.87097 0.84418 0.80035 0.80032 1.19102 1.20686 1.18470 1.18066 0.84391 0.84706 0.77599 1.90670 1.20181 1.81225 1.52508 1.19629 1.00298 0.94521 0.96480 1.22780 0.94668 0.95818 1.01427 1.20324 1.00853 0.93616 0.96455 1.19448 0.99413 0.94468 0.96118 1.21712 1.07095 0.96130 0.98753 1.21735 0.96858 0.90792 0.98525 1.41662 1.43179 1.11266 1.23929 0.75153 1.18014 1.01784 0.91253 0.92271 1.19919 1.00640 0.90584 0.98785 0.92498 0.93580 0.91843 0.92708 0.92947 0.92579 0.93145 0.93920 0.91876 0.89917 0.90672 0.94487 0.92258 0.92138 0.78884 0.85883 0.83852 0.81628 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.46 37.16 0.28 -1.92 16 2 C -0.08 -1.31 0.85 -154.51 -0.13 -1.44 16 3 C -0.14 -1.75 8.47 37.16 0.31 -1.44 16 4 C -0.13 -2.10 7.13 37.16 0.26 -1.83 16 5 C 0.13 2.39 4.59 -4.04 -0.02 2.38 16 6 N -0.58 -11.85 2.01 -176.27 -0.35 -12.20 16 7 C 0.17 3.75 3.00 -5.19 -0.02 3.73 16 8 C -0.54 -13.80 8.05 -34.44 -0.28 -14.08 16 9 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 10 C 0.08 2.12 5.37 -17.82 -0.10 2.02 16 11 N -0.88 -24.74 13.96 55.43 0.77 -23.97 16 12 Si 0.86 19.15 27.39 -169.99 -4.66 14.50 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 16 C 0.56 11.92 5.64 -12.45 -0.07 11.85 16 17 O -0.56 -12.62 14.68 5.29 0.08 -12.55 16 18 C -0.11 -2.11 5.57 -104.94 -0.58 -2.70 16 19 C -0.13 -2.65 7.37 -39.56 -0.29 -2.94 16 20 C -0.09 -1.75 10.03 -39.69 -0.40 -2.15 16 21 C -0.09 -1.52 6.37 -105.04 -0.67 -2.19 16 22 C -0.21 -2.84 11.08 -37.70 -0.42 -3.26 16 23 C 0.05 0.52 11.81 -16.78 -0.20 0.32 16 24 N -0.60 -7.15 6.07 -10.69 -0.06 -7.21 16 25 H 0.41 3.57 8.96 -40.82 -0.37 3.21 16 26 C 0.07 1.16 7.26 -84.00 -0.61 0.55 16 27 C -0.08 -1.37 9.61 -39.03 -0.37 -1.75 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.08 5.81 -51.93 -0.30 0.77 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.87 6.64 -51.93 -0.34 0.53 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 1.07 7.30 -51.93 -0.38 0.69 16 37 H 0.08 1.55 8.06 -51.93 -0.42 1.13 16 38 H 0.07 1.42 7.37 -51.93 -0.38 1.04 16 39 H 0.04 0.80 4.80 -51.93 -0.25 0.55 16 40 H 0.06 1.30 3.42 -52.15 -0.18 1.12 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.20 4.40 3.07 -52.49 -0.16 4.24 16 43 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 46 H 0.12 2.01 7.92 -52.48 -0.42 1.60 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -29.95 357.28 -8.73 -38.68 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -6.59 Total: 12.20 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.30 Total: -14.83 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.35 Total: -43.38 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.66 Total: 14.50 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.95 -8.73 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104627367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.098 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds