Wall clock time and date at job start Tue Mar 31 2020 11:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47034 * 2 1 4 4 C 1.52997 * 109.47047 * 240.00225 * 2 1 3 5 5 C 1.52995 * 109.47110 * 119.99841 * 2 1 3 6 6 N 1.46500 * 109.47157 * 63.50996 * 5 2 1 7 7 C 1.46501 * 120.00079 * 269.05938 * 6 5 2 8 8 C 1.50705 * 109.46824 * 279.33040 * 7 6 5 9 9 H 1.07996 * 119.99613 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99834 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99460 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99947 * 0.02562 * 10 8 7 13 13 H 1.48490 * 109.47411 * 89.99838 * 12 10 8 14 14 H 1.48500 * 109.46776 * 209.99794 * 12 10 8 15 15 H 1.48500 * 109.47020 * 329.99275 * 12 10 8 16 16 C 1.34781 * 119.99664 * 89.05290 * 6 5 2 17 17 O 1.21589 * 119.99981 * 6.57867 * 16 6 5 18 18 C 1.47581 * 119.99849 * 186.58035 * 16 6 5 19 19 C 1.40242 * 119.83402 * 329.09842 * 18 16 6 20 20 C 1.36194 * 120.37965 * 180.22349 * 19 18 16 21 21 C 1.39921 * 119.95750 * 359.80665 * 20 19 18 22 22 C 1.46253 * 133.83628 * 179.97438 * 21 20 19 23 23 C 1.34452 * 107.03436 * 179.97438 * 22 21 20 24 24 N 1.36562 * 109.97479 * 0.02562 * 23 22 21 25 25 H 0.97000 * 125.06954 * 180.02562 * 24 23 22 26 26 C 1.37823 * 109.86300 * 359.97438 * 24 23 22 27 27 C 1.38678 * 133.37688 * 180.02562 * 26 24 23 28 28 H 1.09000 * 109.46859 * 300.00314 * 1 2 3 29 29 H 1.09004 * 109.47325 * 59.99717 * 1 2 3 30 30 H 1.08999 * 109.47228 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46962 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47295 * 300.00301 * 3 2 1 33 33 H 1.09004 * 109.46883 * 59.99880 * 3 2 1 34 34 H 1.09005 * 109.46708 * 305.37110 * 4 2 1 35 35 H 1.09001 * 109.47491 * 65.37225 * 4 2 1 36 36 H 1.08998 * 109.47063 * 185.37273 * 4 2 1 37 37 H 1.09001 * 109.47285 * 303.51151 * 5 2 1 38 38 H 1.08998 * 109.47206 * 183.50911 * 5 2 1 39 39 H 1.08995 * 109.47289 * 39.33390 * 7 6 5 40 40 H 1.09004 * 109.46779 * 159.33740 * 7 6 5 41 41 H 0.96998 * 119.99513 * 180.02562 * 11 10 8 42 42 H 1.07999 * 119.80733 * 0.02562 * 19 18 16 43 43 H 1.07997 * 120.01989 * 179.83069 * 20 19 18 44 44 H 1.07999 * 126.48339 * 0.02562 * 22 21 20 45 45 H 1.07997 * 125.01314 * 180.02562 * 23 22 21 46 46 H 1.08003 * 120.16424 * 359.94441 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.6220 -2.1247 1.2077 7 6 0.3519 -2.5290 1.8159 8 6 0.5336 -2.6810 3.3042 9 1 1.4985 -2.4946 3.7522 10 6 -0.5322 -3.0570 4.0940 11 7 -0.3737 -3.1891 5.3928 12 14 -2.2011 -3.3786 3.3191 13 1 -2.3012 -4.8094 2.9350 14 1 -3.2713 -3.0522 4.2955 15 1 -2.3578 -2.5295 2.1108 16 6 2.4057 -3.0438 0.6099 17 8 3.5116 -2.7331 0.2114 18 6 1.9216 -4.4275 0.4391 19 6 1.0372 -4.9781 1.3779 20 6 0.5870 -6.2554 1.2336 21 6 1.0042 -7.0240 0.1414 22 6 0.7228 -8.3886 -0.3035 23 6 1.4154 -8.5833 -1.4393 24 7 2.1170 -7.4555 -1.7570 25 1 2.6900 -7.3558 -2.5333 26 6 1.8887 -6.4798 -0.8107 27 6 2.3415 -5.1782 -0.6564 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6002 -1.7174 -1.2986 35 1 1.7574 -0.1548 -2.1366 36 1 3.1257 -0.8053 -1.2024 37 1 1.6262 -0.2450 2.1381 38 1 3.1282 -0.6671 1.2812 39 1 -0.4039 -1.7691 1.6178 40 1 0.0316 -3.4799 1.3900 41 1 -1.1234 -3.4540 5.9484 42 1 0.7138 -4.3870 2.2219 43 1 -0.0918 -6.6745 1.9615 44 1 0.0797 -9.1041 0.1871 45 1 1.4167 -9.4967 -2.0154 46 1 3.0203 -4.7504 -1.3794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104627367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:25 Heat of formation + Delta-G solvation = 24.730791 kcal Electronic energy + Delta-G solvation = -27250.503913 eV Core-core repulsion = 23719.686741 eV Total energy + Delta-G solvation = -3530.817172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.26686 -41.19814 -38.36782 -37.61538 -36.05734 -34.36363 -32.91132 -30.97612 -30.06857 -29.81608 -28.15466 -28.12086 -27.20612 -24.66691 -23.91160 -23.06750 -21.60724 -20.63154 -19.65345 -19.11673 -18.93518 -17.90903 -17.36093 -16.74875 -16.61304 -16.01100 -15.66300 -15.43326 -15.21171 -15.04386 -14.81469 -14.62079 -14.49802 -14.43209 -14.15524 -13.87659 -13.60218 -13.40214 -13.08584 -12.84829 -12.64453 -12.54103 -12.52576 -12.49533 -12.16034 -12.13295 -11.83644 -11.77661 -11.58518 -11.54121 -11.37097 -10.86180 -10.70995 -10.62815 -9.37370 -9.13431 -8.63724 -8.32864 -6.39164 -0.12908 0.54269 1.38388 1.40058 1.48741 1.67111 2.03344 2.13200 2.31641 2.43975 2.92184 3.02113 3.64980 3.82722 3.88960 3.94703 4.03388 4.06334 4.32088 4.38699 4.44472 4.53829 4.57691 4.68779 4.73285 4.78187 4.81161 4.86327 4.88948 4.92392 4.96660 5.04791 5.06219 5.07650 5.08411 5.20935 5.30480 5.39259 5.48173 5.50206 5.53757 5.62924 5.70640 5.78963 5.82201 6.15854 6.17217 6.61506 6.69253 6.73784 7.19987 7.33003 8.82844 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.006293 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.345550 B = 4448.318228 C = 6444.752351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.130 4.130 4 C -0.124 4.124 5 C 0.126 3.874 6 N -0.579 5.579 7 C 0.185 3.815 8 C -0.537 4.537 9 H 0.032 0.968 10 C 0.033 3.967 11 N -0.932 5.932 12 Si 0.919 3.081 13 H -0.253 1.253 14 H -0.280 1.280 15 H -0.241 1.241 16 C 0.559 3.441 17 O -0.585 6.585 18 C -0.137 4.137 19 C -0.150 4.150 20 C -0.104 4.104 21 C -0.102 4.102 22 C -0.240 4.240 23 C 0.086 3.914 24 N -0.582 5.582 25 H 0.431 0.569 26 C 0.062 3.938 27 C -0.067 4.067 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.271 0.729 42 H 0.167 0.833 43 H 0.126 0.874 44 H 0.163 0.837 45 H 0.223 0.777 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 -5.140 -17.296 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.188 4.188 4 C -0.182 4.182 5 C 0.003 3.997 6 N -0.307 5.307 7 C 0.064 3.936 8 C -0.575 4.575 9 H 0.050 0.950 10 C -0.168 4.168 11 N -0.570 5.570 12 Si 0.741 3.259 13 H -0.178 1.178 14 H -0.206 1.206 15 H -0.164 1.164 16 C 0.350 3.650 17 O -0.469 6.469 18 C -0.141 4.141 19 C -0.169 4.169 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.264 4.264 23 C -0.041 4.041 24 N -0.186 5.186 25 H 0.271 0.729 26 C -0.045 4.045 27 C -0.089 4.089 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.183 0.817 43 H 0.144 0.856 44 H 0.181 0.819 45 H 0.239 0.761 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.021 -4.992 -17.434 18.134 hybrid contribution -0.285 0.030 0.552 0.622 sum -0.264 -4.963 -16.881 17.597 Atomic orbital electron populations 1.21959 0.94158 1.01484 1.02179 1.20933 0.96341 0.96431 0.94428 1.21744 1.00946 0.93321 1.02785 1.21746 1.00445 0.98996 0.96971 1.21535 0.99417 0.80378 0.98335 1.47670 1.21623 1.07704 1.53703 1.20649 0.82757 0.98401 0.91786 1.21361 0.97001 1.47397 0.91745 0.95010 1.25652 1.02405 0.93909 0.94821 1.70031 1.33472 1.47544 1.05971 0.86128 0.79171 0.80885 0.79741 1.17767 1.20569 1.16371 1.18350 0.84101 0.85356 0.77192 1.90632 1.20818 1.81764 1.53651 1.19558 1.02117 0.94293 0.98151 1.22418 0.96405 0.96818 1.01223 1.20377 1.01122 0.93207 0.97535 1.19812 0.99170 0.96279 0.95441 1.22042 1.09203 0.94871 1.00313 1.22600 0.93166 0.91282 0.97091 1.41777 1.42867 1.10482 1.23490 0.72893 1.17997 1.01736 0.91336 0.93421 1.19973 0.99908 0.91181 0.97830 0.92620 0.90974 0.93773 0.92680 0.90698 0.92095 0.95127 0.91283 0.93453 0.91041 0.91935 0.93640 0.91371 0.92007 0.81663 0.85582 0.81937 0.76093 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 7.46 71.98 0.54 -3.60 16 2 C -0.08 -2.46 0.85 -52.18 -0.04 -2.50 16 3 C -0.13 -3.17 8.47 71.98 0.61 -2.56 16 4 C -0.12 -3.85 7.13 71.98 0.51 -3.34 16 5 C 0.13 4.86 4.59 86.38 0.40 5.26 16 6 N -0.58 -25.08 2.01 -829.85 -1.67 -26.75 16 7 C 0.19 8.42 3.00 85.63 0.26 8.68 16 8 C -0.54 -29.10 8.05 25.60 0.21 -28.89 16 9 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 10 C 0.03 1.78 5.37 84.66 0.45 2.23 16 11 N -0.93 -55.00 13.96 21.45 0.30 -54.70 16 12 Si 0.92 40.04 27.39 68.60 1.88 41.92 16 13 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 14 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 16 C 0.56 24.86 5.64 86.71 0.49 25.35 16 17 O -0.59 -27.35 14.68 -3.99 -0.06 -27.41 16 18 C -0.14 -5.70 5.57 -20.07 -0.11 -5.81 16 19 C -0.15 -6.43 7.37 22.28 0.16 -6.26 16 20 C -0.10 -3.91 10.03 22.20 0.22 -3.69 16 21 C -0.10 -3.29 6.37 -20.14 -0.13 -3.42 16 22 C -0.24 -5.56 11.08 23.49 0.26 -5.29 16 23 C 0.09 1.40 11.81 83.09 0.98 2.38 16 24 N -0.58 -11.43 6.07 -187.73 -1.14 -12.57 16 25 H 0.43 5.43 8.96 -92.71 -0.83 4.60 16 26 C 0.06 1.87 7.26 38.96 0.28 2.15 16 27 C -0.07 -2.36 9.61 22.63 0.22 -2.15 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.04 1.46 5.81 -2.39 -0.01 1.45 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.03 1.05 6.64 -2.38 -0.02 1.04 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.60 7.30 -2.39 -0.02 1.58 16 37 H 0.07 2.85 8.06 -2.39 -0.02 2.83 16 38 H 0.06 2.52 7.37 -2.39 -0.02 2.51 16 39 H 0.05 1.99 4.80 -2.39 -0.01 1.98 16 40 H 0.07 3.09 3.42 -2.59 -0.01 3.08 16 41 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.17 8.00 3.07 -2.91 -0.01 7.99 16 43 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 44 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 45 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.13 4.25 7.92 -2.91 -0.02 4.23 16 Total: -1.00 -70.60 357.28 4.74 -65.86 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.12 Total: 35.12 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.31 Total: -21.47 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -2.51 Total: -94.02 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.88 Total: 41.92 kcal Total: -70.60 4.74 -65.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104627367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.594 kcal (2) G-P(sol) polarization free energy of solvation -70.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds