Wall clock time and date at job start Tue Mar 31 2020 11:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.52995 * 109.47054 * 239.99752 * 2 1 3 5 5 C 1.53000 * 109.46598 * 120.00166 * 2 1 3 6 6 N 1.46494 * 109.47352 * 63.53995 * 5 2 1 7 7 C 1.46507 * 119.99609 * 268.99584 * 6 5 2 8 8 C 1.50697 * 109.47241 * 278.98025 * 7 6 5 9 9 H 1.08005 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00167 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99728 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00016 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47237 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47123 * 120.00212 * 12 10 8 15 15 H 1.48499 * 109.46874 * 239.99752 * 12 10 8 16 16 C 1.34777 * 120.00290 * 88.99567 * 6 5 2 17 17 O 1.21574 * 119.99833 * 6.47795 * 16 6 5 18 18 C 1.47654 * 119.99739 * 186.47804 * 16 6 5 19 19 C 1.40208 * 119.97828 * 329.42980 * 18 16 6 20 20 C 1.36314 * 120.66986 * 180.02562 * 19 18 16 21 21 C 1.39374 * 120.24005 * 359.95061 * 20 19 18 22 22 N 1.37391 * 133.24661 * 179.97438 * 21 20 19 23 23 H 0.96993 * 125.01109 * 0.04250 * 22 21 20 24 24 C 1.36863 * 109.97507 * 180.30831 * 22 21 20 25 25 C 1.34186 * 109.96102 * 359.55097 * 24 22 21 26 26 C 1.40878 * 119.63526 * 0.02754 * 21 20 19 27 27 C 1.39153 * 119.97033 * 149.40896 * 18 16 6 28 28 H 1.09005 * 109.47488 * 300.00481 * 1 2 3 29 29 H 1.09006 * 109.46988 * 59.99755 * 1 2 3 30 30 H 1.08989 * 109.47821 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46812 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47510 * 299.99982 * 3 2 1 33 33 H 1.09000 * 109.47237 * 60.00128 * 3 2 1 34 34 H 1.08998 * 109.47314 * 305.38042 * 4 2 1 35 35 H 1.09006 * 109.47249 * 65.37801 * 4 2 1 36 36 H 1.08993 * 109.47072 * 185.37841 * 4 2 1 37 37 H 1.09002 * 109.47292 * 303.53217 * 5 2 1 38 38 H 1.09003 * 109.46847 * 183.53694 * 5 2 1 39 39 H 1.08996 * 109.47328 * 38.98284 * 7 6 5 40 40 H 1.09002 * 109.46775 * 158.98301 * 7 6 5 41 41 H 0.97000 * 119.99611 * 180.02562 * 11 10 8 42 42 H 1.07996 * 119.66116 * 359.97438 * 19 18 16 43 43 H 1.08003 * 119.87898 * 179.97438 * 20 19 18 44 44 H 1.08003 * 125.01955 * 179.73712 * 24 22 21 45 45 H 1.08004 * 126.54078 * 180.14920 * 25 24 22 46 46 H 1.07996 * 120.30442 * 0.04884 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 7 1.6224 -2.1249 1.2074 7 6 0.3530 -2.5299 1.8163 8 6 0.5378 -2.6910 3.3032 9 1 1.5042 -2.5093 3.7500 10 6 -0.5267 -3.0702 4.0932 11 7 -1.7032 -3.2919 3.5491 12 14 -0.2976 -3.2691 5.9364 13 1 1.1105 -2.9639 6.2961 14 1 -1.2051 -2.3363 6.6515 15 1 -0.6160 -4.6661 6.3268 16 6 2.4061 -3.0435 0.6086 17 8 3.5107 -2.7318 0.2079 18 6 1.9230 -4.4285 0.4395 19 6 1.0356 -4.9800 1.3745 20 6 0.5811 -6.2573 1.2324 21 6 0.9941 -7.0330 0.1506 22 7 0.7143 -8.3178 -0.2477 23 1 0.1251 -8.9297 0.2205 24 6 1.3942 -8.6088 -1.3993 25 6 2.1151 -7.5455 -1.7868 26 6 1.8852 -6.4902 -0.7960 27 6 2.3484 -5.1851 -0.6481 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6001 -1.7173 -1.2986 35 1 1.7574 -0.1549 -2.1366 36 1 3.1257 -0.8055 -1.2023 37 1 1.6257 -0.2454 2.1381 38 1 3.1281 -0.6668 1.2816 39 1 -0.4017 -1.7673 1.6245 40 1 0.0295 -3.4776 1.3857 41 1 -2.4522 -3.5583 4.1049 42 1 0.7096 -4.3872 2.2162 43 1 -0.1018 -6.6695 1.9605 44 1 1.3538 -9.5536 -1.9210 45 1 2.7481 -7.4812 -2.6595 46 1 3.0321 -4.7645 -1.3705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107595744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:20 Heat of formation + Delta-G solvation = 34.571359 kcal Electronic energy + Delta-G solvation = -27150.500581 eV Core-core repulsion = 23620.110129 eV Total energy + Delta-G solvation = -3530.390453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93146 -39.53965 -36.90935 -35.91291 -34.38774 -32.41908 -31.57554 -29.39701 -28.61236 -27.57004 -26.88378 -26.65526 -25.70120 -23.19587 -22.48776 -21.44357 -20.54969 -19.07319 -18.05967 -17.60534 -16.75347 -16.56852 -15.62733 -15.13254 -14.80795 -14.49692 -14.17074 -14.08290 -13.77308 -13.55055 -13.39781 -13.03638 -12.88653 -12.75715 -12.59743 -12.33329 -12.09940 -11.86653 -11.76979 -11.18583 -11.15605 -11.09782 -11.03900 -10.90555 -10.72781 -10.51380 -10.36317 -10.20647 -10.11567 -9.70406 -9.64804 -9.33027 -8.95588 -8.60605 -7.73590 -7.58224 -7.33816 -6.26784 -4.35418 1.51356 1.85622 3.00602 3.16971 3.26546 3.31563 3.37240 3.63971 4.01233 4.26994 4.55020 4.98984 5.03449 5.17596 5.26849 5.27921 5.39886 5.48294 5.56092 5.71142 5.90081 5.95217 5.95977 5.97530 6.00398 6.18425 6.22614 6.26084 6.27392 6.33510 6.39932 6.46997 6.57148 6.64334 6.66096 6.73401 6.84877 6.88139 6.95340 7.05085 7.16749 7.23687 7.27869 7.56288 7.63203 7.70512 7.76519 7.98250 8.42999 8.76147 9.11679 9.32909 10.76963 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.006218 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.015070 B = 4502.127921 C = 6847.452103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.135 4.135 4 C -0.132 4.132 5 C 0.131 3.869 6 N -0.585 5.585 7 C 0.201 3.799 8 C -0.541 4.541 9 H 0.065 0.935 10 C 0.068 3.932 11 N -0.881 5.881 12 Si 0.893 3.107 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.563 3.437 17 O -0.571 6.571 18 C -0.155 4.155 19 C -0.074 4.074 20 C -0.150 4.150 21 C 0.114 3.886 22 N -0.599 5.599 23 H 0.412 0.588 24 C 0.032 3.968 25 C -0.196 4.196 26 C -0.135 4.135 27 C -0.020 4.020 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.266 0.734 42 H 0.203 0.797 43 H 0.119 0.881 44 H 0.165 0.835 45 H 0.142 0.858 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 -4.008 -7.855 9.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.193 4.193 4 C -0.189 4.189 5 C 0.008 3.992 6 N -0.314 5.314 7 C 0.082 3.918 8 C -0.579 4.579 9 H 0.083 0.917 10 C -0.136 4.136 11 N -0.519 5.519 12 Si 0.721 3.279 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.353 3.647 17 O -0.453 6.453 18 C -0.159 4.159 19 C -0.092 4.092 20 C -0.171 4.171 21 C 0.006 3.994 22 N -0.202 5.202 23 H 0.248 0.752 24 C -0.093 4.093 25 C -0.221 4.221 26 C -0.140 4.140 27 C -0.039 4.039 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.219 0.781 43 H 0.137 0.863 44 H 0.182 0.818 45 H 0.160 0.840 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.381 -3.978 -7.973 9.223 hybrid contribution -0.481 -0.566 1.254 1.458 sum 1.900 -4.544 -6.719 8.331 Atomic orbital electron populations 1.21972 0.94454 1.02709 1.00675 1.20952 0.96119 0.95017 0.96452 1.21781 1.00754 0.95473 1.01316 1.21830 1.01613 0.99745 0.95752 1.21341 0.99764 0.81503 0.96633 1.47946 1.22737 1.06542 1.54153 1.20454 0.80298 0.98457 0.92619 1.21546 0.96833 1.47295 0.92210 0.91662 1.24976 0.94871 0.94763 0.99006 1.69948 1.00729 1.45196 1.35993 0.86495 0.78618 0.77949 0.84875 1.19468 1.20757 1.20734 1.18123 0.84284 0.84850 0.77476 1.90649 1.20527 1.81412 1.52707 1.19734 1.02813 0.95052 0.98299 1.22821 0.91467 0.94168 1.00775 1.19817 1.05182 0.94595 0.97473 1.18603 0.98592 0.85119 0.97048 1.41740 1.42564 1.12259 1.23592 0.75167 1.21661 0.98047 1.00021 0.89594 1.21649 1.06172 0.92795 1.01522 1.19017 1.02589 0.94899 0.97458 1.20507 0.96188 0.91076 0.96170 0.92680 0.93825 0.91473 0.92838 0.92999 0.92742 0.93014 0.94029 0.91975 0.90373 0.91044 0.94019 0.91468 0.92374 0.78057 0.86271 0.81808 0.83988 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.46 37.16 0.28 -2.04 16 2 C -0.08 -1.37 0.85 -154.51 -0.13 -1.50 16 3 C -0.14 -1.83 8.47 37.16 0.31 -1.52 16 4 C -0.13 -2.22 7.12 37.16 0.26 -1.95 16 5 C 0.13 2.47 4.59 -4.04 -0.02 2.45 16 6 N -0.59 -12.34 2.01 -176.25 -0.35 -12.70 16 7 C 0.20 4.60 3.92 -5.19 -0.02 4.58 16 8 C -0.54 -13.35 7.49 -34.44 -0.26 -13.60 16 9 H 0.07 1.67 7.81 -52.48 -0.41 1.26 16 10 C 0.07 1.70 5.35 -17.82 -0.10 1.60 16 11 N -0.88 -22.69 13.29 55.43 0.74 -21.96 16 12 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 C 0.56 12.29 5.65 -12.42 -0.07 12.22 16 17 O -0.57 -13.17 14.67 5.30 0.08 -13.10 16 18 C -0.16 -3.23 5.57 -104.97 -0.58 -3.82 16 19 C -0.07 -1.55 7.38 -39.53 -0.29 -1.84 16 20 C -0.15 -2.79 10.00 -39.85 -0.40 -3.19 16 21 C 0.11 1.93 7.27 -83.95 -0.61 1.32 16 22 N -0.60 -7.69 6.05 -10.61 -0.06 -7.75 16 23 H 0.41 3.98 8.96 -40.82 -0.37 3.62 16 24 C 0.03 0.37 11.81 -16.73 -0.20 0.17 16 25 C -0.20 -2.71 11.09 -37.65 -0.42 -3.13 16 26 C -0.14 -2.36 6.36 -105.16 -0.67 -3.03 16 27 C -0.02 -0.37 9.65 -38.86 -0.37 -0.75 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.24 5.82 -51.93 -0.30 0.94 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.96 6.64 -51.93 -0.34 0.62 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.10 7.29 -51.93 -0.38 0.73 16 37 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 38 H 0.07 1.38 7.37 -51.93 -0.38 0.99 16 39 H 0.04 0.99 5.76 -51.93 -0.30 0.69 16 40 H 0.07 1.60 4.02 -52.05 -0.21 1.40 16 41 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 42 H 0.20 4.68 3.11 -52.49 -0.16 4.51 16 43 H 0.12 2.06 8.06 -52.48 -0.42 1.63 16 44 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 46 H 0.12 2.24 7.92 -52.49 -0.42 1.82 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -28.39 361.02 -9.10 -37.49 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.63 Total: 11.91 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.28 Total: -14.02 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.32 Total: -42.40 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.39 -9.10 -37.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107595744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.059 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds