Wall clock time and date at job start Tue Mar 31 2020 11:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.52995 * 109.47054 * 239.99752 * 2 1 3 5 5 C 1.53000 * 109.46598 * 120.00166 * 2 1 3 6 6 N 1.46494 * 109.47352 * 63.53995 * 5 2 1 7 7 C 1.46507 * 119.99609 * 268.99584 * 6 5 2 8 8 C 1.50697 * 109.47241 * 278.98025 * 7 6 5 9 9 H 1.08005 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00167 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99728 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00016 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47237 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47123 * 120.00212 * 12 10 8 15 15 H 1.48499 * 109.46874 * 239.99752 * 12 10 8 16 16 C 1.34777 * 120.00290 * 88.99567 * 6 5 2 17 17 O 1.21574 * 119.99833 * 6.47795 * 16 6 5 18 18 C 1.47654 * 119.99739 * 186.47804 * 16 6 5 19 19 C 1.40208 * 119.97828 * 329.42980 * 18 16 6 20 20 C 1.36314 * 120.66986 * 180.02562 * 19 18 16 21 21 C 1.39374 * 120.24005 * 359.95061 * 20 19 18 22 22 N 1.37391 * 133.24661 * 179.97438 * 21 20 19 23 23 H 0.96993 * 125.01109 * 0.04250 * 22 21 20 24 24 C 1.36863 * 109.97507 * 180.30831 * 22 21 20 25 25 C 1.34186 * 109.96102 * 359.55097 * 24 22 21 26 26 C 1.40878 * 119.63526 * 0.02754 * 21 20 19 27 27 C 1.39153 * 119.97033 * 149.40896 * 18 16 6 28 28 H 1.09005 * 109.47488 * 300.00481 * 1 2 3 29 29 H 1.09006 * 109.46988 * 59.99755 * 1 2 3 30 30 H 1.08989 * 109.47821 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46812 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47510 * 299.99982 * 3 2 1 33 33 H 1.09000 * 109.47237 * 60.00128 * 3 2 1 34 34 H 1.08998 * 109.47314 * 305.38042 * 4 2 1 35 35 H 1.09006 * 109.47249 * 65.37801 * 4 2 1 36 36 H 1.08993 * 109.47072 * 185.37841 * 4 2 1 37 37 H 1.09002 * 109.47292 * 303.53217 * 5 2 1 38 38 H 1.09003 * 109.46847 * 183.53694 * 5 2 1 39 39 H 1.08996 * 109.47328 * 38.98284 * 7 6 5 40 40 H 1.09002 * 109.46775 * 158.98301 * 7 6 5 41 41 H 0.97000 * 119.99611 * 180.02562 * 11 10 8 42 42 H 1.07996 * 119.66116 * 359.97438 * 19 18 16 43 43 H 1.08003 * 119.87898 * 179.97438 * 20 19 18 44 44 H 1.08003 * 125.01955 * 179.73712 * 24 22 21 45 45 H 1.08004 * 126.54078 * 180.14920 * 25 24 22 46 46 H 1.07996 * 120.30442 * 0.04884 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 7 1.6224 -2.1249 1.2074 7 6 0.3530 -2.5299 1.8163 8 6 0.5378 -2.6910 3.3032 9 1 1.5042 -2.5093 3.7500 10 6 -0.5267 -3.0702 4.0932 11 7 -1.7032 -3.2919 3.5491 12 14 -0.2976 -3.2691 5.9364 13 1 1.1105 -2.9639 6.2961 14 1 -1.2051 -2.3363 6.6515 15 1 -0.6160 -4.6661 6.3268 16 6 2.4061 -3.0435 0.6086 17 8 3.5107 -2.7318 0.2079 18 6 1.9230 -4.4285 0.4395 19 6 1.0356 -4.9800 1.3745 20 6 0.5811 -6.2573 1.2324 21 6 0.9941 -7.0330 0.1506 22 7 0.7143 -8.3178 -0.2477 23 1 0.1251 -8.9297 0.2205 24 6 1.3942 -8.6088 -1.3993 25 6 2.1151 -7.5455 -1.7868 26 6 1.8852 -6.4902 -0.7960 27 6 2.3484 -5.1851 -0.6481 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6001 -1.7173 -1.2986 35 1 1.7574 -0.1549 -2.1366 36 1 3.1257 -0.8055 -1.2023 37 1 1.6257 -0.2454 2.1381 38 1 3.1281 -0.6668 1.2816 39 1 -0.4017 -1.7673 1.6245 40 1 0.0295 -3.4776 1.3857 41 1 -2.4522 -3.5583 4.1049 42 1 0.7096 -4.3872 2.2162 43 1 -0.1018 -6.6695 1.9605 44 1 1.3538 -9.5536 -1.9210 45 1 2.7481 -7.4812 -2.6595 46 1 3.0321 -4.7645 -1.3705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107595744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:19 Heat of formation + Delta-G solvation = 20.516042 kcal Electronic energy + Delta-G solvation = -27151.110066 eV Core-core repulsion = 23620.110129 eV Total energy + Delta-G solvation = -3530.999937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.20970 -41.10592 -38.31398 -37.49553 -36.02466 -34.26587 -32.87295 -30.80277 -30.02685 -29.18687 -28.13969 -28.07271 -27.20597 -24.98473 -23.93038 -22.89905 -21.69522 -20.52002 -19.54881 -18.86383 -18.58524 -18.12012 -17.27693 -16.61489 -16.50736 -16.14074 -15.51768 -15.40167 -15.13426 -14.96922 -14.77004 -14.46690 -14.39722 -14.17243 -14.10939 -13.88091 -13.44014 -13.23448 -13.04220 -12.85001 -12.76654 -12.58079 -12.49199 -12.43295 -12.24669 -12.00785 -11.97599 -11.71857 -11.52447 -11.45984 -11.26870 -10.76069 -10.67475 -10.40366 -9.36063 -9.05869 -8.61542 -8.19029 -6.33991 0.09651 0.43992 1.39453 1.44113 1.53962 1.88520 2.01879 2.28382 2.34973 2.49038 3.02014 3.09568 3.74601 3.86475 3.93077 3.98585 4.08409 4.09356 4.35775 4.44263 4.50897 4.58640 4.60762 4.77237 4.78238 4.83463 4.92551 4.94293 4.95398 4.98818 5.05692 5.07391 5.09497 5.23288 5.26128 5.27131 5.38144 5.49586 5.53158 5.56992 5.65981 5.70409 5.79845 5.82981 5.94749 6.07079 6.22249 6.62130 6.76181 6.85845 7.31877 7.45564 8.83914 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.006218 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.015070 B = 4502.127921 C = 6847.452103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 C -0.129 4.129 4 C -0.123 4.123 5 C 0.127 3.873 6 N -0.585 5.585 7 C 0.217 3.783 8 C -0.546 4.546 9 H 0.049 0.951 10 C 0.034 3.966 11 N -0.905 5.905 12 Si 0.948 3.052 13 H -0.275 1.275 14 H -0.277 1.277 15 H -0.275 1.275 16 C 0.559 3.441 17 O -0.592 6.592 18 C -0.179 4.179 19 C -0.100 4.100 20 C -0.148 4.148 21 C 0.103 3.897 22 N -0.585 5.585 23 H 0.430 0.570 24 C 0.066 3.934 25 C -0.221 4.221 26 C -0.148 4.148 27 C -0.025 4.025 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.029 0.971 40 H 0.061 0.939 41 H 0.270 0.730 42 H 0.178 0.822 43 H 0.127 0.873 44 H 0.220 0.780 45 H 0.165 0.835 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 -5.681 -9.078 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.081 4.081 3 C -0.187 4.187 4 C -0.180 4.180 5 C 0.004 3.996 6 N -0.313 5.313 7 C 0.097 3.903 8 C -0.584 4.584 9 H 0.067 0.933 10 C -0.168 4.168 11 N -0.543 5.543 12 Si 0.774 3.226 13 H -0.200 1.200 14 H -0.202 1.202 15 H -0.201 1.201 16 C 0.350 3.650 17 O -0.476 6.476 18 C -0.184 4.184 19 C -0.119 4.119 20 C -0.169 4.169 21 C -0.006 4.006 22 N -0.189 5.189 23 H 0.269 0.731 24 C -0.059 4.059 25 C -0.246 4.246 26 C -0.152 4.152 27 C -0.045 4.045 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.194 0.806 43 H 0.145 0.855 44 H 0.237 0.763 45 H 0.182 0.818 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.091 -5.661 -9.189 10.993 hybrid contribution -0.390 -0.212 1.545 1.608 sum 1.702 -5.873 -7.643 9.788 Atomic orbital electron populations 1.21888 0.94412 1.01183 1.01683 1.20931 0.96029 0.96528 0.94656 1.21732 1.00986 0.93233 1.02714 1.21729 1.00443 0.98800 0.97057 1.21493 0.99284 0.80733 0.98081 1.47938 1.22082 1.07455 1.53798 1.20160 0.80644 0.97658 0.91811 1.21579 0.96198 1.47477 0.93196 0.93291 1.25524 0.94576 0.94417 1.02281 1.70016 1.01236 1.45810 1.37211 0.85651 0.78094 0.78101 0.80757 1.20020 1.20238 1.20073 1.18383 0.84039 0.85501 0.77112 1.90608 1.21214 1.81945 1.53818 1.19720 1.04186 0.94807 0.99642 1.22481 0.93281 0.95381 1.00756 1.19837 1.04773 0.94042 0.98251 1.18533 0.98692 0.86887 0.96481 1.41854 1.42303 1.10845 1.23879 0.73054 1.22521 0.94619 1.01046 0.87733 1.22001 1.08169 0.92243 1.02148 1.19439 1.02213 0.94863 0.98723 1.20581 0.96275 0.92006 0.95606 0.92916 0.91457 0.94251 0.92485 0.90960 0.91985 0.95578 0.91520 0.93307 0.90916 0.91837 0.95296 0.92184 0.92103 0.80583 0.85486 0.76328 0.81768 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.46 71.98 0.54 -3.91 16 2 C -0.08 -2.64 0.85 -52.18 -0.04 -2.68 16 3 C -0.13 -3.31 8.47 71.98 0.61 -2.70 16 4 C -0.12 -4.17 7.12 71.98 0.51 -3.66 16 5 C 0.13 5.01 4.59 86.38 0.40 5.40 16 6 N -0.58 -26.21 2.01 -829.79 -1.67 -27.87 16 7 C 0.22 10.55 3.92 85.63 0.34 10.88 16 8 C -0.55 -28.25 7.49 25.60 0.19 -28.06 16 9 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 10 C 0.03 1.75 5.35 84.66 0.45 2.20 16 11 N -0.90 -47.67 13.29 21.45 0.28 -47.39 16 12 Si 0.95 41.09 29.54 68.60 2.03 43.11 16 13 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 16 C 0.56 25.91 5.65 86.73 0.49 26.40 16 17 O -0.59 -28.77 14.67 -3.95 -0.06 -28.82 16 18 C -0.18 -7.91 5.57 -20.09 -0.11 -8.02 16 19 C -0.10 -4.43 7.38 22.30 0.16 -4.27 16 20 C -0.15 -5.62 10.00 22.09 0.22 -5.40 16 21 C 0.10 3.39 7.27 39.19 0.28 3.67 16 22 N -0.58 -12.97 6.05 -187.48 -1.13 -14.10 16 23 H 0.43 6.62 8.96 -92.71 -0.83 5.79 16 24 C 0.07 1.20 11.81 82.98 0.98 2.18 16 25 C -0.22 -5.43 11.09 23.52 0.26 -5.16 16 26 C -0.15 -5.02 6.36 -20.21 -0.13 -5.15 16 27 C -0.03 -0.98 9.65 22.74 0.22 -0.76 16 28 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.04 1.51 5.82 -2.39 -0.01 1.49 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.03 0.99 6.64 -2.39 -0.02 0.98 16 35 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.05 1.77 7.29 -2.39 -0.02 1.75 16 37 H 0.07 2.89 8.06 -2.39 -0.02 2.87 16 38 H 0.06 2.57 7.37 -2.39 -0.02 2.56 16 39 H 0.03 1.47 5.76 -2.39 -0.01 1.45 16 40 H 0.06 3.07 4.02 -2.50 -0.01 3.06 16 41 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 42 H 0.18 8.71 3.11 -2.91 -0.01 8.70 16 43 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.22 1.61 8.06 -2.91 -0.02 1.58 16 45 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 46 H 0.13 4.70 7.92 -2.91 -0.02 4.68 16 Total: -1.00 -64.69 361.02 4.99 -59.69 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.17 Total: 34.41 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 5.37 Total: -19.02 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -2.52 Total: -89.36 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.06 Total: -28.82 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -64.69 4.99 -59.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107595744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.207 kcal (2) G-P(sol) polarization free energy of solvation -64.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds