Wall clock time and date at job start Tue Mar 31 2020 10:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99973 * 2 1 4 4 C 1.53001 * 109.46960 * 124.99989 * 3 2 1 5 5 C 1.52994 * 109.46995 * 65.00411 * 4 3 2 6 6 C 1.50697 * 109.47218 * 217.64089 * 5 4 3 7 7 C 1.31006 * 120.00102 * 83.02422 * 6 5 4 8 8 C 1.50701 * 109.46666 * 184.99902 * 4 3 2 9 9 O 1.21283 * 120.00292 * 12.01382 * 8 4 3 10 10 N 1.34779 * 119.99603 * 192.00699 * 8 4 3 11 11 C 1.46500 * 120.00000 * 192.96264 * 10 8 4 12 12 C 1.50694 * 109.47662 * 96.50993 * 11 10 8 13 13 H 1.08006 * 119.99928 * 114.44877 * 12 11 10 14 14 C 1.37879 * 120.00269 * 294.45368 * 12 11 10 15 15 N 1.31510 * 119.99716 * 4.83394 * 14 12 11 16 16 Si 1.86798 * 119.99879 * 184.83534 * 14 12 11 17 17 H 1.48508 * 109.47180 * 60.00213 * 16 14 12 18 18 H 1.48498 * 109.46921 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47129 * 299.99954 * 16 14 12 20 20 C 1.46502 * 120.00058 * 12.95600 * 10 8 4 21 21 C 1.50692 * 109.47220 * 273.44379 * 20 10 8 22 22 C 1.38682 * 120.41721 * 253.70701 * 21 20 10 23 23 C 1.38629 * 118.41926 * 179.78482 * 22 21 20 24 24 C 1.38231 * 119.15765 * 0.51141 * 23 22 21 25 25 N 1.31852 * 120.76809 * 359.72769 * 24 23 22 26 26 C 1.31881 * 121.72447 * 0.02562 * 25 24 23 27 27 H 1.07995 * 120.00227 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99721 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00011 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46941 * 5.00214 * 3 2 1 31 31 H 1.08999 * 109.47045 * 245.00151 * 3 2 1 32 32 H 1.09001 * 109.47329 * 305.00236 * 4 3 2 33 33 H 1.09002 * 109.47052 * 337.63645 * 5 4 3 34 34 H 1.08998 * 109.47792 * 97.63910 * 5 4 3 35 35 H 1.08001 * 119.99841 * 263.03018 * 6 5 4 36 36 H 1.07997 * 119.99603 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.99567 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.46821 * 336.51093 * 11 10 8 39 39 H 1.08998 * 109.46921 * 216.51507 * 11 10 8 40 40 H 0.97000 * 119.99725 * 175.00536 * 15 14 12 41 41 H 1.09001 * 109.46881 * 33.44418 * 20 10 8 42 42 H 1.09000 * 109.46953 * 153.44479 * 20 10 8 43 43 H 1.07997 * 120.79164 * 0.02562 * 22 21 20 44 44 H 1.07998 * 120.41840 * 180.22299 * 23 22 21 45 45 H 1.08003 * 119.61591 * 179.74763 * 24 23 22 46 46 H 1.08002 * 119.61765 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0999 0.2510 0.9920 6 6 4.4298 -0.3683 2.3257 7 6 3.6737 -1.3223 2.8099 8 6 3.6990 2.6840 1.2541 9 8 3.2740 3.6051 0.5893 10 7 4.7651 2.8686 2.0578 11 6 5.2355 4.2248 2.3508 12 6 4.6590 4.6835 3.6653 13 1 5.3110 4.8642 4.5072 14 6 3.2992 4.8723 3.7935 15 7 2.4958 4.5618 2.7997 16 14 2.5983 5.5693 5.3785 17 1 3.1723 6.9169 5.6232 18 1 1.1216 5.6744 5.2626 19 1 2.9439 4.6712 6.5095 20 6 5.4535 1.7131 2.6385 21 6 4.7756 1.3192 3.9254 22 6 5.3743 1.5916 5.1463 23 6 4.7120 1.2151 6.3045 24 6 3.4907 0.5755 6.2043 25 7 2.9535 0.3281 5.0259 26 6 3.5526 0.6763 3.9038 27 1 -0.5400 0.9352 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 2.4883 1.1468 2.1061 33 1 3.7209 -0.5176 0.3184 34 1 4.9989 0.6964 0.5660 35 1 5.2895 -0.0256 2.8823 36 1 2.8142 -1.6651 2.2531 37 1 3.9100 -1.7658 3.7659 38 1 4.9141 4.9000 1.5577 39 1 6.3238 4.2268 2.4108 40 1 1.5348 4.6260 2.9148 41 1 5.4167 0.8786 1.9382 42 1 6.4927 1.9729 2.8400 43 1 6.3318 2.0888 5.1938 44 1 5.1470 1.4147 7.2727 45 1 2.9702 0.2753 7.1018 46 1 3.0815 0.4573 2.9569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127187303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:42 Heat of formation + Delta-G solvation = 196.481729 kcal Electronic energy + Delta-G solvation = -28811.682094 eV Core-core repulsion = 25288.312602 eV Total energy + Delta-G solvation = -3523.369492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.79190 -38.65043 -36.56421 -35.49566 -33.92757 -32.59161 -31.61767 -31.07915 -29.85572 -27.80945 -26.59683 -25.54995 -23.73513 -22.84248 -21.88196 -21.43315 -20.22345 -19.18422 -18.30115 -16.66812 -16.44093 -15.93692 -15.50732 -15.36479 -15.20654 -14.66680 -14.51743 -14.28216 -14.00175 -13.39441 -13.22669 -12.95372 -12.83413 -12.50662 -12.43070 -12.25450 -11.96558 -11.77656 -11.50692 -11.37370 -11.07593 -10.88373 -10.71452 -10.67531 -10.49042 -10.46994 -9.92993 -9.74445 -9.43971 -9.24867 -9.09353 -8.96939 -8.66835 -8.46022 -8.16505 -7.54476 -7.02193 -5.90448 -4.07850 1.70130 1.93846 2.36076 2.50274 3.30724 3.37002 3.38491 4.04983 4.26317 4.45190 4.52509 4.85811 4.95650 5.10175 5.18714 5.26690 5.32148 5.41083 5.46780 5.48021 5.54113 5.57518 5.62657 5.68060 5.82048 5.83665 5.95242 6.03614 6.07096 6.16130 6.21994 6.23624 6.33178 6.55708 6.59803 6.67378 6.72264 6.80793 6.86665 6.89672 6.91603 7.04347 7.31403 7.52281 7.86232 8.09259 8.28419 8.59827 8.90119 8.98695 9.59038 9.80159 11.06711 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.007866 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.727131 B = 3558.783118 C = 4493.253776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.073 4.073 4 C -0.122 4.122 5 C -0.103 4.103 6 C -0.179 4.179 7 C -0.201 4.201 8 C 0.539 3.461 9 O -0.512 6.512 10 N -0.589 5.589 11 C 0.238 3.762 12 C -0.541 4.541 13 H 0.051 0.949 14 C 0.082 3.918 15 N -0.838 5.838 16 Si 0.873 3.127 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.089 3.911 21 C -0.141 4.141 22 C -0.050 4.050 23 C -0.195 4.195 24 C 0.084 3.916 25 N -0.501 5.501 26 C 0.090 3.910 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.135 0.865 42 H 0.069 0.931 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.140 0.860 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 -13.059 -1.346 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.168 4.168 3 C -0.111 4.111 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.196 4.196 7 C -0.238 4.238 8 C 0.325 3.675 9 O -0.386 6.386 10 N -0.322 5.322 11 C 0.120 3.880 12 C -0.579 4.579 13 H 0.069 0.931 14 C -0.125 4.125 15 N -0.473 5.473 16 Si 0.701 3.299 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.035 4.035 21 C -0.145 4.145 22 C -0.076 4.076 23 C -0.215 4.215 24 C -0.072 4.072 25 N -0.211 5.211 26 C -0.065 4.065 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.172 0.828 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.152 0.848 42 H 0.087 0.913 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.157 0.843 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.545 -12.839 -1.851 13.219 hybrid contribution 0.147 0.916 1.849 2.068 sum 2.692 -11.923 -0.002 12.224 Atomic orbital electron populations 1.23831 0.96087 1.01566 1.02021 1.23071 0.96040 0.98562 0.99154 1.20554 0.98022 0.95158 0.97342 1.21836 0.96620 0.94893 1.00906 1.21189 0.99603 0.98123 0.95116 1.24470 1.02111 0.96130 0.96938 1.23878 1.00289 0.98436 1.01194 1.19479 0.80266 0.88027 0.79735 1.90566 1.62088 1.42973 1.42941 1.48583 1.30775 1.06634 1.46160 1.19205 0.91757 0.80128 0.96934 1.21250 0.92606 1.46053 0.98027 0.93124 1.25003 0.97537 0.94636 0.95372 1.70108 1.03214 1.44735 1.29222 0.86964 0.78182 0.79864 0.84886 1.20274 1.21380 1.20411 1.22392 0.95734 0.92770 0.92624 1.21167 0.97627 0.98872 0.96791 1.21265 0.99582 0.94981 0.91795 1.21858 0.97787 1.02947 0.98882 1.22530 0.92950 0.96040 0.95668 1.67773 1.33879 1.21264 0.98150 1.24804 0.92478 0.90794 0.98437 0.88523 0.88958 0.87664 0.89855 0.90897 0.87329 0.89962 0.89602 0.82770 0.88297 0.88300 0.93104 0.96605 0.93074 0.84822 0.91269 0.85751 0.86182 0.84255 0.78702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.55 14.32 29.01 0.42 -2.13 16 2 C -0.15 -1.99 8.95 -36.03 -0.32 -2.31 16 3 C -0.07 -1.19 4.55 -27.88 -0.13 -1.31 16 4 C -0.12 -2.12 1.78 -91.77 -0.16 -2.29 16 5 C -0.10 -1.37 4.53 -27.89 -0.13 -1.50 16 6 C -0.18 -2.35 4.71 -36.44 -0.17 -2.52 16 7 C -0.20 -2.57 10.81 29.01 0.31 -2.26 16 8 C 0.54 11.96 5.34 -10.98 -0.06 11.90 16 9 O -0.51 -13.49 13.63 5.55 0.08 -13.42 16 10 N -0.59 -12.64 2.38 -180.40 -0.43 -13.06 16 11 C 0.24 5.84 5.65 -5.20 -0.03 5.81 16 12 C -0.54 -14.44 9.27 -34.44 -0.32 -14.76 16 13 H 0.05 1.35 7.82 -52.48 -0.41 0.94 16 14 C 0.08 2.28 5.43 -17.82 -0.10 2.18 16 15 N -0.84 -24.16 9.69 55.43 0.54 -23.63 16 16 Si 0.87 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 C 0.09 1.50 4.57 -5.20 -0.02 1.48 16 21 C -0.14 -2.53 3.86 -104.48 -0.40 -2.93 16 22 C -0.05 -0.87 9.81 -39.27 -0.39 -1.26 16 23 C -0.19 -3.24 10.11 -39.44 -0.40 -3.64 16 24 C 0.08 1.45 11.18 -17.55 -0.20 1.25 16 25 N -0.50 -9.46 10.03 -13.53 -0.14 -9.60 16 26 C 0.09 1.66 5.65 -17.96 -0.10 1.55 16 27 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 28 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.11 1.18 6.89 -52.49 -0.36 0.82 16 30 H 0.08 1.58 7.44 -51.93 -0.39 1.20 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.11 2.12 4.77 -51.93 -0.25 1.87 16 33 H 0.08 0.91 6.16 -51.93 -0.32 0.59 16 34 H 0.09 1.11 6.31 -51.93 -0.33 0.78 16 35 H 0.16 2.07 3.53 -60.06 -0.21 1.86 16 36 H 0.10 1.18 8.05 -52.49 -0.42 0.75 16 37 H 0.10 1.31 7.81 -52.48 -0.41 0.90 16 38 H 0.05 1.41 7.14 -51.93 -0.37 1.04 16 39 H 0.02 0.35 7.97 -51.93 -0.41 -0.07 16 40 H 0.26 7.47 8.32 -40.82 -0.34 7.13 16 41 H 0.14 1.89 1.75 -102.21 -0.18 1.71 16 42 H 0.07 1.07 7.77 -51.93 -0.40 0.67 16 43 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 44 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.14 2.01 8.06 -52.48 -0.42 1.58 16 46 H 0.20 3.43 1.16 -73.59 -0.09 3.35 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -32.06 348.20 -8.13 -40.19 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.21 Total: 10.07 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.19 Total: -12.74 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.03 Total: -46.29 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.06 -8.13 -40.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127187303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.669 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 204.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds