Wall clock time and date at job start Tue Mar 31 2020 10:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99973 * 2 1 4 4 C 1.53001 * 109.46960 * 124.99989 * 3 2 1 5 5 C 1.52994 * 109.46995 * 65.00411 * 4 3 2 6 6 C 1.50697 * 109.47218 * 217.64089 * 5 4 3 7 7 C 1.31006 * 120.00102 * 83.02422 * 6 5 4 8 8 C 1.50701 * 109.46666 * 184.99902 * 4 3 2 9 9 O 1.21283 * 120.00292 * 12.01382 * 8 4 3 10 10 N 1.34779 * 119.99603 * 192.00699 * 8 4 3 11 11 C 1.46500 * 120.00000 * 192.96264 * 10 8 4 12 12 C 1.50694 * 109.47662 * 96.50993 * 11 10 8 13 13 H 1.08006 * 119.99928 * 114.44877 * 12 11 10 14 14 C 1.37879 * 120.00269 * 294.45368 * 12 11 10 15 15 N 1.31510 * 119.99716 * 4.83394 * 14 12 11 16 16 Si 1.86798 * 119.99879 * 184.83534 * 14 12 11 17 17 H 1.48508 * 109.47180 * 60.00213 * 16 14 12 18 18 H 1.48498 * 109.46921 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47129 * 299.99954 * 16 14 12 20 20 C 1.46502 * 120.00058 * 12.95600 * 10 8 4 21 21 C 1.50692 * 109.47220 * 273.44379 * 20 10 8 22 22 C 1.38682 * 120.41721 * 253.70701 * 21 20 10 23 23 C 1.38629 * 118.41926 * 179.78482 * 22 21 20 24 24 C 1.38231 * 119.15765 * 0.51141 * 23 22 21 25 25 N 1.31852 * 120.76809 * 359.72769 * 24 23 22 26 26 C 1.31881 * 121.72447 * 0.02562 * 25 24 23 27 27 H 1.07995 * 120.00227 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99721 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00011 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46941 * 5.00214 * 3 2 1 31 31 H 1.08999 * 109.47045 * 245.00151 * 3 2 1 32 32 H 1.09001 * 109.47329 * 305.00236 * 4 3 2 33 33 H 1.09002 * 109.47052 * 337.63645 * 5 4 3 34 34 H 1.08998 * 109.47792 * 97.63910 * 5 4 3 35 35 H 1.08001 * 119.99841 * 263.03018 * 6 5 4 36 36 H 1.07997 * 119.99603 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.99567 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.46821 * 336.51093 * 11 10 8 39 39 H 1.08998 * 109.46921 * 216.51507 * 11 10 8 40 40 H 0.97000 * 119.99725 * 175.00536 * 15 14 12 41 41 H 1.09001 * 109.46881 * 33.44418 * 20 10 8 42 42 H 1.09000 * 109.46953 * 153.44479 * 20 10 8 43 43 H 1.07997 * 120.79164 * 0.02562 * 22 21 20 44 44 H 1.07998 * 120.41840 * 180.22299 * 23 22 21 45 45 H 1.08003 * 119.61591 * 179.74763 * 24 23 22 46 46 H 1.08002 * 119.61765 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0999 0.2510 0.9920 6 6 4.4298 -0.3683 2.3257 7 6 3.6737 -1.3223 2.8099 8 6 3.6990 2.6840 1.2541 9 8 3.2740 3.6051 0.5893 10 7 4.7651 2.8686 2.0578 11 6 5.2355 4.2248 2.3508 12 6 4.6590 4.6835 3.6653 13 1 5.3110 4.8642 4.5072 14 6 3.2992 4.8723 3.7935 15 7 2.4958 4.5618 2.7997 16 14 2.5983 5.5693 5.3785 17 1 3.1723 6.9169 5.6232 18 1 1.1216 5.6744 5.2626 19 1 2.9439 4.6712 6.5095 20 6 5.4535 1.7131 2.6385 21 6 4.7756 1.3192 3.9254 22 6 5.3743 1.5916 5.1463 23 6 4.7120 1.2151 6.3045 24 6 3.4907 0.5755 6.2043 25 7 2.9535 0.3281 5.0259 26 6 3.5526 0.6763 3.9038 27 1 -0.5400 0.9352 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 2.4883 1.1468 2.1061 33 1 3.7209 -0.5176 0.3184 34 1 4.9989 0.6964 0.5660 35 1 5.2895 -0.0256 2.8823 36 1 2.8142 -1.6651 2.2531 37 1 3.9100 -1.7658 3.7659 38 1 4.9141 4.9000 1.5577 39 1 6.3238 4.2268 2.4108 40 1 1.5348 4.6260 2.9148 41 1 5.4167 0.8786 1.9382 42 1 6.4927 1.9729 2.8400 43 1 6.3318 2.0888 5.1938 44 1 5.1470 1.4147 7.2727 45 1 2.9702 0.2753 7.1018 46 1 3.0815 0.4573 2.9569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127187303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:41 Heat of formation + Delta-G solvation = 178.141284 kcal Electronic energy + Delta-G solvation = -28812.477396 eV Core-core repulsion = 25288.312602 eV Total energy + Delta-G solvation = -3524.164794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.10560 -40.13456 -38.04928 -36.93763 -35.40415 -34.38286 -33.16973 -32.34181 -31.19444 -29.48667 -28.11004 -26.80740 -25.36192 -24.32509 -23.41392 -22.80992 -21.48141 -20.35901 -19.67208 -18.42635 -18.02459 -17.30307 -16.99022 -16.70492 -16.64044 -16.44035 -15.95361 -15.83447 -15.26183 -14.81749 -14.60201 -14.30646 -14.17754 -14.09154 -13.80295 -13.75100 -13.49538 -13.25980 -13.12736 -12.89052 -12.72065 -12.65657 -12.30790 -11.99467 -11.78574 -11.73475 -11.65948 -11.50403 -11.17135 -10.66079 -10.52021 -10.31713 -10.17869 -9.91130 -9.88704 -8.90256 -8.63647 -8.00939 -6.23098 0.37017 0.62168 1.28948 1.31216 1.31491 1.35762 1.46529 2.34880 2.39691 2.74155 3.06839 3.36948 3.62098 3.77583 3.85782 3.99860 4.06464 4.12025 4.19802 4.28733 4.30781 4.33554 4.40108 4.48131 4.54951 4.65755 4.67308 4.78231 4.90405 4.97464 4.99890 5.00752 5.05933 5.16706 5.28643 5.31560 5.38743 5.45907 5.57032 5.67881 5.70054 5.76948 5.79594 6.00370 6.00946 6.16865 6.33492 6.83671 7.24908 7.25998 7.47570 8.08554 8.91917 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.007866 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.727131 B = 3558.783118 C = 4493.253776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.069 4.069 4 C -0.108 4.108 5 C -0.096 4.096 6 C -0.187 4.187 7 C -0.188 4.188 8 C 0.529 3.471 9 O -0.565 6.565 10 N -0.591 5.591 11 C 0.241 3.759 12 C -0.540 4.540 13 H 0.052 0.948 14 C 0.039 3.961 15 N -0.861 5.861 16 Si 0.921 3.079 17 H -0.271 1.271 18 H -0.297 1.297 19 H -0.274 1.274 20 C 0.084 3.916 21 C -0.153 4.153 22 C -0.063 4.063 23 C -0.199 4.199 24 C 0.071 3.929 25 N -0.523 5.523 26 C 0.080 3.920 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.139 0.861 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.009 0.991 39 H 0.040 0.960 40 H 0.247 0.753 41 H 0.168 0.832 42 H 0.085 0.915 43 H 0.137 0.863 44 H 0.147 0.853 45 H 0.164 0.836 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 -15.577 -0.543 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.107 4.107 4 C -0.129 4.129 5 C -0.133 4.133 6 C -0.204 4.204 7 C -0.225 4.225 8 C 0.317 3.683 9 O -0.443 6.443 10 N -0.322 5.322 11 C 0.121 3.879 12 C -0.579 4.579 13 H 0.070 0.930 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.748 3.252 17 H -0.196 1.196 18 H -0.223 1.223 19 H -0.200 1.200 20 C -0.038 4.038 21 C -0.156 4.156 22 C -0.089 4.089 23 C -0.219 4.219 24 C -0.084 4.084 25 N -0.233 5.233 26 C -0.075 4.075 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.156 0.844 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.170 0.830 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.027 0.973 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.184 0.816 42 H 0.104 0.896 43 H 0.155 0.845 44 H 0.164 0.836 45 H 0.182 0.818 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.456 -15.384 -1.017 15.800 hybrid contribution -0.095 1.703 1.629 2.359 sum 3.361 -13.681 0.612 14.101 Atomic orbital electron populations 1.24015 0.96223 1.02162 1.01109 1.23063 0.96088 0.97942 0.99856 1.20463 0.97333 0.95774 0.97132 1.21663 0.97418 0.93318 1.00493 1.21153 0.98571 0.97494 0.96072 1.24328 1.02507 0.96608 0.96957 1.23961 1.00180 0.97614 1.00786 1.20295 0.79850 0.89363 0.78800 1.90532 1.63399 1.45231 1.45100 1.48316 1.30999 1.06778 1.46098 1.18936 0.92930 0.81383 0.94622 1.21458 0.92426 1.45461 0.98590 0.92998 1.25567 0.98158 0.95327 0.97473 1.70298 1.02435 1.46485 1.30463 0.86197 0.76993 0.79579 0.82386 1.19618 1.22345 1.19982 1.22836 0.95887 0.91931 0.93165 1.21229 0.97806 0.99329 0.97227 1.21578 1.00325 0.95007 0.92028 1.22184 0.97567 1.02213 0.99904 1.23027 0.93451 0.95827 0.96080 1.67785 1.34510 1.22210 0.98818 1.24989 0.92757 0.91000 0.98716 0.90227 0.86152 0.84366 0.93925 0.90434 0.89038 0.86702 0.88813 0.82977 0.86880 0.88747 0.97321 0.94208 0.94333 0.81590 0.89627 0.84485 0.83569 0.81837 0.78229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.78 14.32 67.78 0.97 -3.81 16 2 C -0.15 -3.70 8.95 25.64 0.23 -3.47 16 3 C -0.07 -2.25 4.55 29.85 0.14 -2.11 16 4 C -0.11 -3.72 1.78 -11.54 -0.02 -3.74 16 5 C -0.10 -2.29 4.53 29.84 0.14 -2.16 16 6 C -0.19 -4.37 4.71 25.38 0.12 -4.25 16 7 C -0.19 -4.26 10.81 67.77 0.73 -3.53 16 8 C 0.53 23.90 5.34 87.66 0.47 24.37 16 9 O -0.56 -31.23 13.63 -3.04 -0.04 -31.27 16 10 N -0.59 -25.31 2.38 -843.04 -2.00 -27.31 16 11 C 0.24 11.99 5.65 85.63 0.48 12.47 16 12 C -0.54 -28.92 9.27 25.60 0.24 -28.68 16 13 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 14 C 0.04 2.20 5.43 84.66 0.46 2.65 16 15 N -0.86 -51.30 9.69 21.45 0.21 -51.10 16 16 Si 0.92 45.46 29.54 68.60 2.03 47.49 16 17 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 18 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 19 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 20 C 0.08 2.69 4.57 85.63 0.39 3.08 16 21 C -0.15 -5.22 3.86 -19.77 -0.08 -5.30 16 22 C -0.06 -2.08 9.81 22.47 0.22 -1.86 16 23 C -0.20 -6.15 10.11 22.36 0.23 -5.93 16 24 C 0.07 2.32 11.18 84.69 0.95 3.27 16 25 N -0.52 -18.97 10.03 -196.71 -1.97 -20.95 16 26 C 0.08 2.84 5.65 84.41 0.48 3.31 16 27 H 0.08 2.17 7.84 -2.91 -0.02 2.15 16 28 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.14 2.48 6.89 -2.91 -0.02 2.46 16 30 H 0.04 1.71 7.44 -2.39 -0.02 1.69 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.09 3.55 4.77 -2.39 -0.01 3.54 16 33 H 0.11 2.04 6.16 -2.39 -0.01 2.03 16 34 H 0.09 2.14 6.31 -2.39 -0.02 2.13 16 35 H 0.15 3.68 3.53 -10.02 -0.04 3.65 16 36 H 0.11 2.25 8.05 -2.91 -0.02 2.22 16 37 H 0.09 2.27 7.81 -2.91 -0.02 2.24 16 38 H 0.01 0.49 7.14 -2.39 -0.02 0.48 16 39 H 0.04 1.73 7.97 -2.39 -0.02 1.71 16 40 H 0.25 14.88 8.32 -92.71 -0.77 14.11 16 41 H 0.17 4.29 1.75 -49.62 -0.09 4.20 16 42 H 0.09 2.45 7.77 -2.39 -0.02 2.43 16 43 H 0.14 4.03 8.04 -2.91 -0.02 4.01 16 44 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 45 H 0.16 4.31 8.06 -2.91 -0.02 4.28 16 46 H 0.20 6.74 1.16 -22.73 -0.03 6.72 16 Total: -1.00 -72.21 348.20 5.22 -66.99 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.86 Total: 31.83 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 6.14 Total: -15.69 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -3.77 Total: -99.35 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.04 Total: -31.27 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.21 5.22 -66.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127187303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.133 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds