Wall clock time and date at job start Tue Mar 31 2020 10:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46826 * 146.52605 * 3 2 1 5 5 C 1.53003 * 109.46815 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47182 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47084 * 179.97438 * 6 5 4 8 8 C 1.34784 * 119.99864 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99858 * 359.72927 * 8 7 6 10 10 N 1.34777 * 119.99964 * 179.73002 * 8 7 6 11 11 C 1.46496 * 119.99614 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47513 * 34.99437 * 11 10 8 13 13 C 1.53005 * 109.46999 * 154.99671 * 11 10 8 14 14 C 1.50695 * 109.46978 * 294.99563 * 13 11 10 15 15 H 1.08001 * 120.00091 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99897 * 179.97438 * 14 13 11 17 17 N 1.31523 * 120.00218 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00156 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47166 * 89.99628 * 18 16 14 20 20 H 1.48496 * 109.47292 * 209.99722 * 18 16 14 21 21 H 1.48496 * 109.47230 * 330.00002 * 18 16 14 22 22 C 1.50698 * 109.47133 * 274.99546 * 11 10 8 23 23 C 1.38236 * 119.99733 * 319.73012 * 22 11 10 24 24 C 1.38236 * 119.99905 * 179.78750 * 23 22 11 25 25 C 1.38235 * 120.00221 * 0.44254 * 24 23 22 26 26 C 1.38245 * 119.99811 * 359.81002 * 25 24 23 27 27 C 1.38231 * 120.00269 * 140.00231 * 22 11 10 28 28 H 4.44649 * 5.63406 * 180.02562 * 4 1 2 29 29 H 1.08993 * 109.47072 * 26.52655 * 3 2 1 30 30 H 1.09001 * 109.47070 * 266.52334 * 3 2 1 31 31 H 1.08993 * 109.47254 * 60.00162 * 4 3 2 32 32 H 1.09001 * 109.47075 * 299.99726 * 4 3 2 33 33 H 1.09007 * 109.47291 * 60.00109 * 5 4 3 34 34 H 1.08993 * 109.47243 * 300.00018 * 5 4 3 35 35 H 1.09007 * 109.46593 * 60.00081 * 6 5 4 36 36 H 1.09006 * 109.47216 * 300.00539 * 6 5 4 37 37 H 0.97000 * 120.00740 * 359.72857 * 7 6 5 38 38 H 0.96996 * 119.99887 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.47071 * 54.99707 * 13 11 10 40 40 H 1.09000 * 109.46960 * 174.99671 * 13 11 10 41 41 H 0.96993 * 120.00047 * 180.02562 * 17 16 14 42 42 H 1.08004 * 120.00443 * 359.97438 * 23 22 11 43 43 H 1.08002 * 120.00624 * 180.27464 * 24 23 22 44 44 H 1.07994 * 120.00724 * 179.83443 * 25 24 23 45 45 H 1.07994 * 119.99799 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.99949 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.2042 -0.7957 5 6 4.6854 1.2052 -0.7951 6 6 5.1949 2.4083 -1.5913 7 7 6.6598 2.4096 -1.5902 8 6 7.3333 3.3837 -2.2339 9 8 6.7250 4.2586 -2.8195 10 7 8.6811 3.3880 -2.2283 11 6 9.4130 4.4471 -2.9274 12 1 8.8623 5.3842 -2.8459 13 6 10.7971 4.6124 -2.2966 14 6 10.6478 5.1002 -0.8786 15 1 9.6642 5.2745 -0.4682 16 6 11.7670 5.3230 -0.1049 17 7 11.6368 5.7483 1.1329 18 14 13.4684 5.0209 -0.8144 19 1 13.9667 6.2657 -1.4528 20 1 14.3944 4.6180 0.2743 21 1 13.3966 3.9389 -1.8290 22 6 9.5641 4.0781 -4.3807 23 6 9.8499 2.7732 -4.7364 24 6 9.9842 2.4339 -6.0697 25 6 9.8417 3.4012 -7.0469 26 6 9.5611 4.7072 -6.6909 27 6 9.4226 5.0456 -5.3578 28 1 -1.0502 -0.0002 0.0004 29 1 3.0097 -0.9186 -0.4589 30 1 3.0093 0.0631 1.0258 31 1 2.7917 2.1234 -0.3367 32 1 2.7921 1.1417 -1.8214 33 1 5.0496 0.2859 -1.2538 34 1 5.0483 1.2679 0.2307 35 1 4.8307 3.3278 -1.1329 36 1 4.8319 2.3453 -2.6172 37 1 7.1452 1.7120 -1.1228 38 1 9.1663 2.6903 -1.7608 39 1 11.3141 3.6527 -2.2982 40 1 11.3741 5.3369 -2.8713 41 1 12.4242 5.9054 1.6771 42 1 9.9652 2.0182 -3.9728 43 1 10.2030 1.4135 -6.3480 44 1 9.9493 3.1367 -8.0884 45 1 9.4503 5.4630 -7.4543 46 1 9.2032 6.0660 -5.0797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134178970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:59 Heat of formation + Delta-G solvation = 25.968749 kcal Electronic energy + Delta-G solvation = -24913.464605 eV Core-core repulsion = 21382.701114 eV Total energy + Delta-G solvation = -3530.763490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.80637 -38.67471 -36.77114 -35.36351 -34.38019 -32.71047 -32.34491 -31.01492 -30.50761 -29.32918 -28.50910 -25.13655 -23.83901 -22.29642 -21.74326 -21.56275 -20.63467 -19.77586 -18.37666 -17.78798 -17.10252 -16.42753 -16.14113 -15.87488 -15.07590 -14.76015 -14.67424 -14.54948 -14.31084 -13.92645 -13.74700 -13.43779 -13.10493 -13.03483 -12.93233 -12.58787 -12.37869 -12.05804 -11.95170 -11.71813 -11.52873 -11.32526 -11.07755 -10.97609 -10.71292 -10.61827 -10.44101 -10.35599 -10.14370 -9.84723 -9.65658 -9.31706 -8.85952 -8.62425 -8.57879 -8.33473 -8.23230 -6.10473 -4.09930 1.71217 1.74174 2.53881 2.58353 3.15875 3.26478 3.34292 3.36444 3.75385 4.07813 4.15826 4.38400 4.66343 4.69343 4.72119 5.00591 5.15925 5.20489 5.21825 5.23572 5.29434 5.31784 5.38253 5.48030 5.51542 5.67815 5.76669 5.84957 5.85403 5.87131 6.02985 6.04613 6.10231 6.27466 6.33977 6.46550 6.76654 6.77694 6.79261 6.86361 6.96463 7.07551 7.29995 7.34214 7.35841 7.50827 7.66396 8.44717 8.54741 8.96216 9.13866 9.50425 11.02361 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.003123 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.942317 B = 8963.627862 C =11124.766800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.184 4.184 3 C -0.014 4.014 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.141 3.859 7 N -0.753 5.753 8 C 0.705 3.295 9 O -0.598 6.598 10 N -0.717 5.717 11 C 0.213 3.787 12 H 0.091 0.909 13 C -0.014 4.014 14 C -0.518 4.518 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.076 4.076 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.107 4.107 28 H 0.216 0.784 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.394 0.606 38 H 0.396 0.604 39 H 0.023 0.977 40 H 0.030 0.970 41 H 0.263 0.737 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.057 -12.510 -7.792 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.184 4.184 3 C -0.051 4.051 4 C -0.149 4.149 5 C -0.169 4.169 6 C 0.017 3.983 7 N -0.409 5.409 8 C 0.405 3.595 9 O -0.476 6.476 10 N -0.369 5.369 11 C 0.107 3.893 12 H 0.109 0.891 13 C -0.052 4.052 14 C -0.556 4.556 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.077 4.077 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.232 0.768 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.230 0.770 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.502 -11.623 -8.165 18.923 hybrid contribution 1.228 -0.765 0.246 1.467 sum -11.274 -12.388 -7.919 18.528 Atomic orbital electron populations 1.24918 0.96020 1.01047 1.01298 1.23207 0.94673 1.00322 1.00230 1.18774 0.84592 0.99739 1.01948 1.21437 0.94664 0.97925 1.00891 1.21805 0.95360 0.98505 1.01279 1.21069 0.79069 0.98038 1.00169 1.45058 1.06756 1.30254 1.58863 1.15952 0.82164 0.81891 0.79511 1.90875 1.68046 1.38877 1.49822 1.45023 1.03800 1.31088 1.57015 1.19802 0.94797 0.89935 0.84736 0.89071 1.19881 0.90618 0.97539 0.97149 1.21020 0.95122 1.44684 0.94761 0.90588 1.24995 0.98971 0.94538 0.94690 1.69910 1.29907 1.45975 1.07947 0.86856 0.84655 0.79281 0.78954 1.20211 1.21408 1.18976 1.20640 0.96584 0.93603 0.96879 1.20909 0.99744 0.96185 0.95762 1.21044 1.01261 0.98939 0.93194 1.21009 1.01884 0.93564 0.98806 1.21062 1.00703 0.96302 0.96042 1.21048 0.99501 0.99539 0.92453 0.76752 0.89494 0.89373 0.91059 0.91193 0.91102 0.90847 0.91835 0.92000 0.77262 0.76983 0.95889 0.95206 0.92673 0.86588 0.86761 0.86823 0.86538 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.80 19.25 29.55 0.57 -1.23 16 2 C -0.18 -1.69 13.34 -37.12 -0.50 -2.18 16 3 C -0.01 -0.10 5.70 -29.51 -0.17 -0.27 16 4 C -0.11 -0.85 5.17 -26.73 -0.14 -0.99 16 5 C -0.13 -1.05 5.33 -26.73 -0.14 -1.19 16 6 C 0.14 1.68 5.67 -4.04 -0.02 1.65 16 7 N -0.75 -10.31 5.56 -65.22 -0.36 -10.67 16 8 C 0.70 12.93 8.52 -86.91 -0.74 12.19 16 9 O -0.60 -13.26 16.01 5.29 0.08 -13.17 16 10 N -0.72 -12.92 4.05 -59.81 -0.24 -13.16 16 11 C 0.21 4.26 2.11 -69.08 -0.15 4.11 16 12 H 0.09 2.05 7.44 -51.93 -0.39 1.66 16 13 C -0.01 -0.32 3.56 -27.88 -0.10 -0.42 16 14 C -0.52 -13.88 9.39 -34.44 -0.32 -14.20 16 15 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 18 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.01 6.54 56.52 0.37 -5.65 16 22 C -0.08 -1.36 4.91 -104.63 -0.51 -1.88 16 23 C -0.11 -1.74 9.32 -39.58 -0.37 -2.10 16 24 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 25 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 26 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 27 C -0.11 -1.81 9.67 -39.58 -0.38 -2.19 16 28 H 0.22 1.09 7.80 -54.08 -0.42 0.66 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.39 4.30 8.49 -40.82 -0.35 3.96 16 38 H 0.40 6.40 8.62 -40.82 -0.35 6.05 16 39 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 40 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.12 1.72 7.73 -52.48 -0.41 1.32 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.12 1.98 8.04 -52.48 -0.42 1.55 16 LS Contribution 393.85 15.07 5.94 5.94 Total: -1.00 -33.90 393.85 -10.08 -43.98 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.34 Total: 10.45 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -4.26 Total: -13.49 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.17 Total: -49.87 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.90 -10.08 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134178970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.947 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds