Wall clock time and date at job start Tue Mar 31 2020 10:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46826 * 146.52605 * 3 2 1 5 5 C 1.53003 * 109.46815 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47182 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47084 * 179.97438 * 6 5 4 8 8 C 1.34784 * 119.99864 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99858 * 359.72927 * 8 7 6 10 10 N 1.34777 * 119.99964 * 179.73002 * 8 7 6 11 11 C 1.46496 * 119.99614 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47513 * 34.99437 * 11 10 8 13 13 C 1.53005 * 109.46999 * 154.99671 * 11 10 8 14 14 C 1.50695 * 109.46978 * 294.99563 * 13 11 10 15 15 H 1.08001 * 120.00091 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99897 * 179.97438 * 14 13 11 17 17 N 1.31523 * 120.00218 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00156 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47166 * 89.99628 * 18 16 14 20 20 H 1.48496 * 109.47292 * 209.99722 * 18 16 14 21 21 H 1.48496 * 109.47230 * 330.00002 * 18 16 14 22 22 C 1.50698 * 109.47133 * 274.99546 * 11 10 8 23 23 C 1.38236 * 119.99733 * 319.73012 * 22 11 10 24 24 C 1.38236 * 119.99905 * 179.78750 * 23 22 11 25 25 C 1.38235 * 120.00221 * 0.44254 * 24 23 22 26 26 C 1.38245 * 119.99811 * 359.81002 * 25 24 23 27 27 C 1.38231 * 120.00269 * 140.00231 * 22 11 10 28 28 H 4.44649 * 5.63406 * 180.02562 * 4 1 2 29 29 H 1.08993 * 109.47072 * 26.52655 * 3 2 1 30 30 H 1.09001 * 109.47070 * 266.52334 * 3 2 1 31 31 H 1.08993 * 109.47254 * 60.00162 * 4 3 2 32 32 H 1.09001 * 109.47075 * 299.99726 * 4 3 2 33 33 H 1.09007 * 109.47291 * 60.00109 * 5 4 3 34 34 H 1.08993 * 109.47243 * 300.00018 * 5 4 3 35 35 H 1.09007 * 109.46593 * 60.00081 * 6 5 4 36 36 H 1.09006 * 109.47216 * 300.00539 * 6 5 4 37 37 H 0.97000 * 120.00740 * 359.72857 * 7 6 5 38 38 H 0.96996 * 119.99887 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.47071 * 54.99707 * 13 11 10 40 40 H 1.09000 * 109.46960 * 174.99671 * 13 11 10 41 41 H 0.96993 * 120.00047 * 180.02562 * 17 16 14 42 42 H 1.08004 * 120.00443 * 359.97438 * 23 22 11 43 43 H 1.08002 * 120.00624 * 180.27464 * 24 23 22 44 44 H 1.07994 * 120.00724 * 179.83443 * 25 24 23 45 45 H 1.07994 * 119.99799 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.99949 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.2042 -0.7957 5 6 4.6854 1.2052 -0.7951 6 6 5.1949 2.4083 -1.5913 7 7 6.6598 2.4096 -1.5902 8 6 7.3333 3.3837 -2.2339 9 8 6.7250 4.2586 -2.8195 10 7 8.6811 3.3880 -2.2283 11 6 9.4130 4.4471 -2.9274 12 1 8.8623 5.3842 -2.8459 13 6 10.7971 4.6124 -2.2966 14 6 10.6478 5.1002 -0.8786 15 1 9.6642 5.2745 -0.4682 16 6 11.7670 5.3230 -0.1049 17 7 11.6368 5.7483 1.1329 18 14 13.4684 5.0209 -0.8144 19 1 13.9667 6.2657 -1.4528 20 1 14.3944 4.6180 0.2743 21 1 13.3966 3.9389 -1.8290 22 6 9.5641 4.0781 -4.3807 23 6 9.8499 2.7732 -4.7364 24 6 9.9842 2.4339 -6.0697 25 6 9.8417 3.4012 -7.0469 26 6 9.5611 4.7072 -6.6909 27 6 9.4226 5.0456 -5.3578 28 1 -1.0502 -0.0002 0.0004 29 1 3.0097 -0.9186 -0.4589 30 1 3.0093 0.0631 1.0258 31 1 2.7917 2.1234 -0.3367 32 1 2.7921 1.1417 -1.8214 33 1 5.0496 0.2859 -1.2538 34 1 5.0483 1.2679 0.2307 35 1 4.8307 3.3278 -1.1329 36 1 4.8319 2.3453 -2.6172 37 1 7.1452 1.7120 -1.1228 38 1 9.1663 2.6903 -1.7608 39 1 11.3141 3.6527 -2.2982 40 1 11.3741 5.3369 -2.8713 41 1 12.4242 5.9054 1.6771 42 1 9.9652 2.0182 -3.9728 43 1 10.2030 1.4135 -6.3480 44 1 9.9493 3.1367 -8.0884 45 1 9.4503 5.4630 -7.4543 46 1 9.2032 6.0660 -5.0797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134178970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:58 Heat of formation + Delta-G solvation = 5.588992 kcal Electronic energy + Delta-G solvation = -24914.348337 eV Core-core repulsion = 21382.701114 eV Total energy + Delta-G solvation = -3531.647223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.22427 -39.91157 -37.65274 -36.76087 -35.50139 -34.67284 -33.38151 -32.26039 -31.66974 -30.95439 -29.43109 -26.72264 -24.81751 -23.57799 -23.24418 -22.36666 -22.02914 -21.22926 -19.29532 -19.03415 -18.83565 -17.78960 -17.24028 -16.94051 -16.37720 -16.23422 -15.93389 -15.76548 -15.38393 -15.07721 -14.97209 -14.70800 -14.56640 -14.22312 -14.13817 -13.86517 -13.75003 -13.51581 -13.05912 -12.88632 -12.70433 -12.51554 -12.39604 -12.26817 -11.91664 -11.72872 -11.72190 -11.67931 -11.40043 -11.28725 -11.04754 -10.95439 -10.76409 -10.27339 -9.75676 -9.68152 -9.50585 -8.26569 -6.31177 0.51490 0.57660 1.38695 1.39857 1.50896 1.79744 1.94260 1.95630 2.27999 2.37057 2.96077 3.08269 3.41617 3.58797 3.91527 3.96181 4.03344 4.05408 4.22376 4.31584 4.34079 4.39226 4.43837 4.60379 4.61473 4.71631 4.75411 4.78109 4.79333 4.93665 5.04153 5.06741 5.16636 5.20297 5.22882 5.29146 5.33002 5.37178 5.56573 5.59035 5.63020 5.66044 5.67650 5.88524 6.14604 6.19885 6.28918 6.73541 6.75873 7.21480 7.33037 7.70489 8.89842 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.003123 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.942317 B = 8963.627862 C =11124.766800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.216 4.216 3 C -0.012 4.012 4 C -0.106 4.106 5 C -0.116 4.116 6 C 0.139 3.861 7 N -0.736 5.736 8 C 0.698 3.302 9 O -0.641 6.641 10 N -0.713 5.713 11 C 0.223 3.777 12 H 0.051 0.949 13 C -0.004 4.004 14 C -0.517 4.517 15 H 0.030 0.970 16 C 0.010 3.990 17 N -0.949 5.949 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.240 1.240 22 C -0.100 4.100 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.132 4.132 28 H 0.240 0.760 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.410 0.590 38 H 0.406 0.594 39 H 0.039 0.961 40 H 0.029 0.971 41 H 0.265 0.735 42 H 0.125 0.875 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.142 0.858 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 -15.308 -9.978 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.216 4.216 3 C -0.049 4.049 4 C -0.144 4.144 5 C -0.154 4.154 6 C 0.015 3.985 7 N -0.392 5.392 8 C 0.398 3.602 9 O -0.524 6.524 10 N -0.366 5.366 11 C 0.117 3.883 12 H 0.070 0.930 13 C -0.042 4.042 14 C -0.555 4.555 15 H 0.048 0.952 16 C -0.187 4.187 17 N -0.589 5.589 18 Si 0.769 3.231 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.164 1.164 22 C -0.101 4.101 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.151 4.151 28 H 0.256 0.744 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.247 0.753 38 H 0.241 0.759 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.160 0.840 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.546 -14.473 -10.340 21.206 hybrid contribution 0.785 0.140 0.913 1.213 sum -10.760 -14.334 -9.426 20.251 Atomic orbital electron populations 1.25704 0.97062 1.00332 1.00627 1.23828 0.95771 1.01069 1.00959 1.18820 0.83770 0.99837 1.02440 1.21362 0.94269 0.97970 1.00821 1.21704 0.95383 0.97210 1.01109 1.21205 0.77764 0.99175 1.00379 1.44963 1.07517 1.29257 1.57500 1.16182 0.82139 0.82250 0.79615 1.90837 1.68832 1.40847 1.51841 1.44881 1.03891 1.30786 1.57040 1.19383 0.92907 0.89147 0.86843 0.93042 1.19737 0.92380 0.97760 0.94311 1.21183 0.93173 1.44196 0.96916 0.95162 1.25908 1.03596 0.94315 0.94865 1.70069 1.31273 1.47853 1.09746 0.85733 0.78818 0.79880 0.78645 1.19921 1.21114 1.16365 1.20445 0.99319 0.95137 0.95237 1.21083 0.99894 0.95291 0.97327 1.21444 0.99827 1.00720 0.92218 1.21477 0.99777 0.92763 1.00619 1.21381 0.99760 0.97787 0.95304 1.21182 1.00844 0.99179 0.93847 0.74398 0.87999 0.88501 0.92128 0.91486 0.89074 0.90004 0.93860 0.92711 0.75348 0.75876 0.94282 0.95241 0.92565 0.85687 0.83508 0.83234 0.84017 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.47 19.25 74.32 1.43 -2.04 16 2 C -0.22 -3.77 13.34 31.13 0.42 -3.36 16 3 C -0.01 -0.16 5.70 28.79 0.16 0.00 16 4 C -0.11 -1.55 5.17 30.60 0.16 -1.39 16 5 C -0.12 -1.70 5.33 30.60 0.16 -1.54 16 6 C 0.14 3.33 5.67 86.38 0.49 3.82 16 7 N -0.74 -20.18 5.56 -478.52 -2.66 -22.84 16 8 C 0.70 26.51 8.52 179.05 1.53 28.04 16 9 O -0.64 -29.99 16.01 -3.99 -0.06 -30.06 16 10 N -0.71 -26.40 4.05 -461.41 -1.87 -28.27 16 11 C 0.22 9.28 2.11 44.25 0.09 9.37 16 12 H 0.05 2.51 7.44 -2.39 -0.02 2.49 16 13 C 0.00 -0.19 3.56 29.85 0.11 -0.08 16 14 C -0.52 -28.67 9.39 25.60 0.24 -28.43 16 15 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 16 C 0.01 0.58 5.47 84.65 0.46 1.04 16 17 N -0.95 -58.34 13.96 21.45 0.30 -58.04 16 18 Si 0.95 42.72 27.47 68.60 1.88 44.61 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 22 C -0.10 -3.60 4.91 -19.87 -0.10 -3.70 16 23 C -0.12 -3.57 9.32 22.27 0.21 -3.36 16 24 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 25 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 26 C -0.12 -3.35 10.05 22.27 0.22 -3.13 16 27 C -0.13 -4.48 9.67 22.27 0.22 -4.26 16 28 H 0.24 2.06 7.80 -4.41 -0.03 2.03 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 1.21 8.14 -2.38 -0.02 1.20 16 36 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.41 8.53 8.49 -92.71 -0.79 7.75 16 38 H 0.41 13.13 8.62 -92.71 -0.80 12.33 16 39 H 0.04 1.65 7.20 -2.39 -0.02 1.63 16 40 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 42 H 0.13 3.44 7.73 -2.91 -0.02 3.41 16 43 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 44 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 45 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 46 H 0.11 3.84 8.04 -2.91 -0.02 3.82 16 Total: -1.00 -77.23 393.85 3.17 -74.06 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: -0.67 Total: 35.20 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 6.25 Total: -14.66 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.23 Total: -109.15 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.06 Total: -30.06 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.61 kcal Total: -77.23 3.17 -74.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134178970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.650 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds