Wall clock time and date at job start Tue Mar 31 2020 11:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47388 * 2 1 4 4 C 1.53000 * 109.46914 * 119.99643 * 2 1 3 5 5 N 1.46898 * 109.47131 * 173.30144 * 4 2 1 6 6 C 1.46846 * 110.99976 * 317.74246 * 5 4 2 7 7 C 1.53038 * 109.52445 * 185.83685 * 6 5 4 8 8 C 1.53113 * 109.28004 * 300.82631 * 7 6 5 9 9 C 1.53115 * 109.15721 * 57.65750 * 8 7 6 10 10 C 1.46850 * 111.00042 * 81.95399 * 5 4 2 11 11 H 1.08999 * 109.46525 * 294.16620 * 10 5 4 12 12 C 1.53000 * 109.46277 * 54.14701 * 10 5 4 13 13 N 1.46504 * 109.47390 * 53.83989 * 12 10 5 14 14 C 1.34773 * 120.00125 * 174.82935 * 13 12 10 15 15 O 1.21281 * 120.00099 * 359.97438 * 14 13 12 16 16 C 1.50691 * 119.99902 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47114 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99895 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00252 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99496 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00092 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99602 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46957 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47090 * 300.00025 * 22 20 18 25 25 H 1.48502 * 109.47105 * 60.00082 * 22 20 18 26 26 H 1.09003 * 109.47154 * 300.00849 * 1 2 3 27 27 H 1.09003 * 109.46674 * 60.00342 * 1 2 3 28 28 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47162 * 239.99698 * 2 1 3 30 30 H 1.08997 * 109.47362 * 82.01175 * 3 2 1 31 31 H 1.08999 * 109.47361 * 202.01916 * 3 2 1 32 32 H 1.09003 * 109.46913 * 322.01481 * 3 2 1 33 33 H 1.08999 * 109.47362 * 53.30143 * 4 2 1 34 34 H 1.09004 * 109.47372 * 293.30270 * 4 2 1 35 35 H 1.08996 * 109.46678 * 305.85410 * 6 5 4 36 36 H 1.09002 * 109.46080 * 65.83561 * 6 5 4 37 37 H 1.09006 * 109.50051 * 60.76433 * 7 6 5 38 38 H 1.08995 * 109.50670 * 180.84044 * 7 6 5 39 39 H 1.09009 * 109.52439 * 177.55693 * 8 7 6 40 40 H 1.09006 * 109.52496 * 297.67889 * 8 7 6 41 41 H 1.08997 * 109.50163 * 182.39558 * 9 8 7 42 42 H 1.09006 * 109.51228 * 62.27439 * 9 8 7 43 43 H 1.09003 * 109.46876 * 293.84329 * 12 10 5 44 44 H 1.09000 * 109.47218 * 173.84282 * 12 10 5 45 45 H 0.96998 * 119.99949 * 354.83206 * 13 12 10 46 46 H 1.09000 * 109.47797 * 60.00304 * 16 14 13 47 47 H 1.09002 * 109.47580 * 299.99544 * 16 14 13 48 48 H 0.97000 * 119.99437 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8627 1.1713 6 6 3.9195 -1.2516 -0.1812 7 6 5.4242 -1.5307 -0.1895 8 6 6.1743 -0.2723 0.2558 9 6 5.6842 0.1390 1.6469 10 6 4.1720 0.3700 1.6019 11 1 3.9478 1.1710 0.8974 12 6 3.6745 0.7620 2.9947 13 7 3.8415 -0.3701 3.9094 14 6 3.5670 -0.2232 5.2207 15 8 3.1821 0.8464 5.6435 16 6 3.7393 -1.3875 6.1617 17 16 3.2935 -0.8778 7.8403 18 6 3.5790 -2.3867 8.7042 19 1 3.9267 -3.2579 8.1690 20 6 3.3570 -2.4556 10.0726 21 7 2.9336 -1.3936 10.7250 22 14 3.6590 -4.0555 10.9884 23 1 3.3491 -3.8675 12.4285 24 1 2.7855 -5.1184 10.4293 25 1 5.0817 -4.4525 10.8354 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 2.0265 1.8327 1.0177 31 1 3.0594 1.4675 -0.3853 32 1 1.3975 2.0550 -0.6325 33 1 1.5820 -1.7084 1.3113 34 1 1.7777 -0.1428 2.1352 35 1 3.3819 -2.1500 -0.4840 36 1 3.6965 -0.4429 -0.8772 37 1 5.6464 -2.3485 0.4961 38 1 5.7380 -1.8048 -1.1967 39 1 7.2438 -0.4797 0.2930 40 1 5.9842 0.5347 -0.4519 41 1 6.1838 1.0585 1.9516 42 1 5.9103 -0.6527 2.3613 43 1 2.6201 1.0331 2.9409 44 1 4.2502 1.6123 3.3601 45 1 4.1497 -1.2255 3.5714 46 1 4.7782 -1.7171 6.1456 47 1 3.0931 -2.2073 5.8477 48 1 2.7781 -1.4419 11.6812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154079649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:41 Heat of formation + Delta-G solvation = -45.002749 kcal Electronic energy + Delta-G solvation = -25003.208734 eV Core-core repulsion = 21604.811640 eV Total energy + Delta-G solvation = -3398.397094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57655 -38.70912 -36.07906 -34.59179 -32.41499 -32.38180 -31.50356 -29.12340 -27.81184 -26.71219 -25.79136 -25.32618 -23.56313 -21.58855 -20.59989 -20.30475 -19.24348 -17.79790 -16.62212 -16.31900 -15.79990 -15.66619 -15.05425 -14.97939 -14.76505 -14.66348 -14.43688 -13.98777 -13.75402 -13.66057 -13.01659 -13.00525 -12.78256 -12.57669 -12.47592 -12.45500 -12.10730 -11.95913 -11.74905 -11.64151 -11.45739 -11.20196 -11.00352 -10.99812 -10.85860 -10.81520 -10.70523 -10.52272 -10.41046 -9.76992 -9.28854 -9.01737 -8.68641 -8.39276 -8.17457 -6.44072 -6.17089 -3.86895 3.13023 3.22750 3.26759 3.30749 3.36176 3.60867 3.93671 4.25352 4.38346 4.49509 4.55561 4.57761 4.68328 4.74041 4.87217 4.99071 5.06200 5.17849 5.19970 5.28287 5.31528 5.33422 5.36527 5.38716 5.46318 5.51069 5.55840 5.64353 5.66673 5.67504 5.73451 5.74654 5.82712 5.88052 5.89824 5.93051 5.97551 6.00306 6.11328 6.15821 6.23852 6.73115 6.87403 6.94073 7.63932 7.93672 8.39788 8.76728 9.28118 10.90312 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.018503 B = 0.002859 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.895563 B = 9789.916432 C =10232.957837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C -0.156 4.156 4 C 0.048 3.952 5 N -0.527 5.527 6 C 0.054 3.946 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.114 4.114 10 C 0.057 3.943 11 H 0.072 0.928 12 C 0.126 3.874 13 N -0.724 5.724 14 C 0.529 3.471 15 O -0.525 6.525 16 C -0.151 4.151 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.283 1.283 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.405 0.595 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 1.548 -27.116 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.212 4.212 4 C -0.079 4.079 5 N -0.251 5.251 6 C -0.074 4.074 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.152 4.152 10 C -0.052 4.052 11 H 0.089 0.911 12 C 0.002 3.998 13 N -0.380 5.380 14 C 0.315 3.685 15 O -0.400 6.400 16 C -0.302 4.302 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.209 1.209 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.241 0.759 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.617 3.042 -25.910 26.138 hybrid contribution 0.494 -2.035 -0.664 2.197 sum 2.112 1.007 -26.574 26.677 Atomic orbital electron populations 1.21792 0.94790 1.01836 1.01843 1.21849 0.96630 0.96750 1.00098 1.22187 1.00576 0.96194 1.02285 1.22518 0.86935 1.00997 0.97494 1.62092 1.05974 1.32288 1.24705 1.22132 0.95926 1.00009 0.89291 1.21614 0.94356 0.98451 1.01246 1.21570 0.99816 0.97604 0.96789 1.21648 0.93837 1.02216 0.97461 1.22304 0.94699 0.92282 0.95881 0.91102 1.21371 1.00766 0.90005 0.87704 1.45865 1.70230 1.14735 1.07166 1.20292 0.76473 0.89679 0.82022 1.90689 1.44730 1.28038 1.76552 1.23504 1.04946 0.99293 1.02448 1.85363 1.87202 1.17957 0.92973 1.22844 1.52212 0.97671 0.95606 0.91011 1.24985 0.94646 0.97436 0.96509 1.70014 1.42719 1.28484 1.09167 0.86236 0.78839 0.82162 0.78324 1.20857 1.19952 1.19954 0.92430 0.92883 0.92602 0.90780 0.92076 0.92451 0.92698 0.90535 0.89672 0.90834 0.94276 0.90996 0.91821 0.91790 0.92489 0.91364 0.90783 0.91854 0.91138 0.75891 0.89405 0.89344 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.08 37.16 0.34 -0.72 16 2 C -0.13 -0.99 2.40 -90.62 -0.22 -1.21 16 3 C -0.16 -1.14 7.61 37.16 0.28 -0.86 16 4 C 0.05 0.43 4.98 -3.82 -0.02 0.41 16 5 N -0.53 -4.49 4.01 -226.69 -0.91 -5.40 16 6 C 0.05 0.39 4.21 -3.83 -0.02 0.38 16 7 C -0.12 -0.82 6.09 -26.65 -0.16 -0.98 16 8 C -0.12 -0.85 6.00 -26.61 -0.16 -1.01 16 9 C -0.11 -0.97 5.27 -26.65 -0.14 -1.11 16 10 C 0.06 0.50 1.46 -67.72 -0.10 0.40 16 11 H 0.07 0.58 4.29 -51.93 -0.22 0.36 16 12 C 0.13 1.50 4.45 -4.04 -0.02 1.48 16 13 N -0.72 -10.05 5.07 -60.29 -0.31 -10.35 16 14 C 0.53 10.11 7.85 -10.99 -0.09 10.02 16 15 O -0.52 -12.13 15.86 5.56 0.09 -12.04 16 16 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.54 -15.48 9.50 30.94 0.29 -15.19 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 22 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.53 6.03 -51.93 -0.31 0.22 16 30 H 0.06 0.50 6.40 -51.93 -0.33 0.17 16 31 H 0.06 0.41 5.37 -51.93 -0.28 0.13 16 32 H 0.05 0.38 7.94 -51.93 -0.41 -0.03 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.90 5.16 -51.93 -0.27 0.63 16 35 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 36 H 0.04 0.28 5.48 -51.93 -0.28 -0.01 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.71 7.37 -51.93 -0.38 0.33 16 43 H 0.06 0.80 5.45 -51.93 -0.28 0.51 16 44 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 45 H 0.41 4.96 7.45 -40.82 -0.30 4.66 16 46 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 47 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 48 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -33.06 373.01 -10.00 -43.07 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.12 Total: 1.43 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 0.12 Total: -9.29 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.48 Total: -41.51 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.06 -10.00 -43.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154079649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.936 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds