Wall clock time and date at job start Tue Mar 31 2020 11:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47388 * 2 1 4 4 C 1.53000 * 109.46914 * 119.99643 * 2 1 3 5 5 N 1.46898 * 109.47131 * 173.30144 * 4 2 1 6 6 C 1.46846 * 110.99976 * 317.74246 * 5 4 2 7 7 C 1.53038 * 109.52445 * 185.83685 * 6 5 4 8 8 C 1.53113 * 109.28004 * 300.82631 * 7 6 5 9 9 C 1.53115 * 109.15721 * 57.65750 * 8 7 6 10 10 C 1.46850 * 111.00042 * 81.95399 * 5 4 2 11 11 H 1.08999 * 109.46525 * 294.16620 * 10 5 4 12 12 C 1.53000 * 109.46277 * 54.14701 * 10 5 4 13 13 N 1.46504 * 109.47390 * 53.83989 * 12 10 5 14 14 C 1.34773 * 120.00125 * 174.82935 * 13 12 10 15 15 O 1.21281 * 120.00099 * 359.97438 * 14 13 12 16 16 C 1.50691 * 119.99902 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47114 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99895 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00252 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99496 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00092 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99602 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46957 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47090 * 300.00025 * 22 20 18 25 25 H 1.48502 * 109.47105 * 60.00082 * 22 20 18 26 26 H 1.09003 * 109.47154 * 300.00849 * 1 2 3 27 27 H 1.09003 * 109.46674 * 60.00342 * 1 2 3 28 28 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47162 * 239.99698 * 2 1 3 30 30 H 1.08997 * 109.47362 * 82.01175 * 3 2 1 31 31 H 1.08999 * 109.47361 * 202.01916 * 3 2 1 32 32 H 1.09003 * 109.46913 * 322.01481 * 3 2 1 33 33 H 1.08999 * 109.47362 * 53.30143 * 4 2 1 34 34 H 1.09004 * 109.47372 * 293.30270 * 4 2 1 35 35 H 1.08996 * 109.46678 * 305.85410 * 6 5 4 36 36 H 1.09002 * 109.46080 * 65.83561 * 6 5 4 37 37 H 1.09006 * 109.50051 * 60.76433 * 7 6 5 38 38 H 1.08995 * 109.50670 * 180.84044 * 7 6 5 39 39 H 1.09009 * 109.52439 * 177.55693 * 8 7 6 40 40 H 1.09006 * 109.52496 * 297.67889 * 8 7 6 41 41 H 1.08997 * 109.50163 * 182.39558 * 9 8 7 42 42 H 1.09006 * 109.51228 * 62.27439 * 9 8 7 43 43 H 1.09003 * 109.46876 * 293.84329 * 12 10 5 44 44 H 1.09000 * 109.47218 * 173.84282 * 12 10 5 45 45 H 0.96998 * 119.99949 * 354.83206 * 13 12 10 46 46 H 1.09000 * 109.47797 * 60.00304 * 16 14 13 47 47 H 1.09002 * 109.47580 * 299.99544 * 16 14 13 48 48 H 0.97000 * 119.99437 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8627 1.1713 6 6 3.9195 -1.2516 -0.1812 7 6 5.4242 -1.5307 -0.1895 8 6 6.1743 -0.2723 0.2558 9 6 5.6842 0.1390 1.6469 10 6 4.1720 0.3700 1.6019 11 1 3.9478 1.1710 0.8974 12 6 3.6745 0.7620 2.9947 13 7 3.8415 -0.3701 3.9094 14 6 3.5670 -0.2232 5.2207 15 8 3.1821 0.8464 5.6435 16 6 3.7393 -1.3875 6.1617 17 16 3.2935 -0.8778 7.8403 18 6 3.5790 -2.3867 8.7042 19 1 3.9267 -3.2579 8.1690 20 6 3.3570 -2.4556 10.0726 21 7 2.9336 -1.3936 10.7250 22 14 3.6590 -4.0555 10.9884 23 1 3.3491 -3.8675 12.4285 24 1 2.7855 -5.1184 10.4293 25 1 5.0817 -4.4525 10.8354 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 2.0265 1.8327 1.0177 31 1 3.0594 1.4675 -0.3853 32 1 1.3975 2.0550 -0.6325 33 1 1.5820 -1.7084 1.3113 34 1 1.7777 -0.1428 2.1352 35 1 3.3819 -2.1500 -0.4840 36 1 3.6965 -0.4429 -0.8772 37 1 5.6464 -2.3485 0.4961 38 1 5.7380 -1.8048 -1.1967 39 1 7.2438 -0.4797 0.2930 40 1 5.9842 0.5347 -0.4519 41 1 6.1838 1.0585 1.9516 42 1 5.9103 -0.6527 2.3613 43 1 2.6201 1.0331 2.9409 44 1 4.2502 1.6123 3.3601 45 1 4.1497 -1.2255 3.5714 46 1 4.7782 -1.7171 6.1456 47 1 3.0931 -2.2073 5.8477 48 1 2.7781 -1.4419 11.6812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154079649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:40 Heat of formation + Delta-G solvation = -66.737889 kcal Electronic energy + Delta-G solvation = -25004.151240 eV Core-core repulsion = 21604.811640 eV Total energy + Delta-G solvation = -3399.339600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41129 -40.10868 -36.73607 -35.75316 -34.57433 -33.08803 -32.55662 -30.55251 -28.43936 -27.74121 -27.38001 -26.56016 -24.19850 -22.35256 -21.84697 -21.10192 -20.00397 -19.82272 -17.83819 -17.46261 -16.90682 -16.86438 -16.62725 -16.19099 -15.91228 -15.62717 -15.37490 -15.16827 -14.81185 -14.55988 -14.38391 -14.26418 -13.77923 -13.60542 -13.38839 -13.15850 -13.09470 -13.04826 -12.85069 -12.83843 -12.63802 -12.58567 -12.38012 -12.09232 -11.79882 -11.74295 -11.46692 -11.44395 -11.14389 -11.13203 -11.11757 -10.90338 -10.26591 -9.98568 -9.06858 -8.65112 -8.33425 -6.11391 1.28526 1.44633 1.47903 1.58325 1.67174 2.28140 2.37009 2.96668 3.00422 3.35482 3.66333 3.77283 3.89595 3.97160 4.03570 4.07047 4.14847 4.23657 4.31616 4.32063 4.42847 4.53043 4.55894 4.61356 4.63386 4.72052 4.74337 4.79886 4.87770 4.89827 4.97124 4.97450 5.07260 5.09853 5.14200 5.23645 5.28774 5.31953 5.37476 5.42499 5.44907 5.50063 5.55408 6.17015 6.20745 6.22706 6.61231 7.07575 7.31825 8.75620 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.018503 B = 0.002859 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.895563 B = 9789.916432 C =10232.957837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C -0.154 4.154 4 C 0.051 3.949 5 N -0.533 5.533 6 C 0.055 3.945 7 C -0.116 4.116 8 C -0.116 4.116 9 C -0.114 4.114 10 C 0.068 3.932 11 H 0.084 0.916 12 C 0.126 3.874 13 N -0.697 5.697 14 C 0.532 3.468 15 O -0.571 6.571 16 C -0.127 4.127 17 S -0.149 6.149 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.278 1.278 24 H -0.262 1.262 25 H -0.262 1.262 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.417 0.583 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -0.202 -29.347 29.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.210 4.210 4 C -0.077 4.077 5 N -0.257 5.257 6 C -0.072 4.072 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.152 4.152 10 C -0.040 4.040 11 H 0.101 0.899 12 C 0.001 3.999 13 N -0.351 5.351 14 C 0.317 3.683 15 O -0.450 6.450 16 C -0.279 4.279 17 S 0.078 5.922 18 C -0.696 4.696 19 H 0.100 0.900 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.203 1.203 24 H -0.187 1.187 25 H -0.186 1.186 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.255 0.745 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.566 1.271 -28.203 28.348 hybrid contribution 0.204 -1.457 -0.106 1.475 sum 2.770 -0.185 -28.310 28.445 Atomic orbital electron populations 1.21789 0.94816 1.01931 1.01685 1.21787 0.96561 0.96662 0.99633 1.22158 1.01094 0.96141 1.01643 1.22434 0.87268 1.00635 0.97387 1.62093 1.05721 1.31912 1.26011 1.22183 0.96276 1.00412 0.88370 1.21605 0.93928 0.97958 1.01904 1.21543 1.00102 0.97966 0.95744 1.21653 0.93321 1.01866 0.98400 1.22192 0.94954 0.92970 0.93861 0.89905 1.21519 1.00572 0.88911 0.88863 1.45620 1.67992 1.15922 1.05535 1.20034 0.76479 0.88426 0.83331 1.90678 1.47279 1.29440 1.77585 1.23341 1.06128 1.00256 0.98135 1.85529 1.88057 1.19892 0.98729 1.23186 1.52380 0.97748 0.96306 0.90025 1.26128 0.93941 1.01547 0.97472 1.70179 1.43845 1.31173 1.09588 0.85008 0.79340 0.76985 0.76685 1.20331 1.18660 1.18638 0.93605 0.92017 0.92409 0.89745 0.93362 0.91808 0.92120 0.90807 0.91749 0.90370 0.93506 0.91890 0.90301 0.91289 0.91651 0.91405 0.91920 0.92392 0.92019 0.74526 0.87581 0.87649 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.08 71.98 0.65 -1.30 16 2 C -0.13 -1.66 2.40 -10.79 -0.03 -1.69 16 3 C -0.15 -2.01 7.61 71.98 0.55 -1.46 16 4 C 0.05 0.83 4.98 86.30 0.43 1.26 16 5 N -0.53 -8.14 4.01 -871.10 -3.49 -11.63 16 6 C 0.05 0.65 4.21 86.33 0.36 1.01 16 7 C -0.12 -1.28 6.09 30.65 0.19 -1.09 16 8 C -0.12 -1.34 6.00 30.67 0.18 -1.16 16 9 C -0.11 -1.74 5.27 30.65 0.16 -1.58 16 10 C 0.07 1.11 1.46 44.94 0.07 1.17 16 11 H 0.08 1.20 4.29 -2.39 -0.01 1.19 16 12 C 0.13 2.93 4.45 86.38 0.38 3.32 16 13 N -0.70 -18.90 5.07 -463.06 -2.35 -21.25 16 14 C 0.53 20.41 7.85 87.65 0.69 21.10 16 15 O -0.57 -27.18 15.86 -3.03 -0.05 -27.22 16 16 C -0.13 -5.26 6.16 71.23 0.44 -4.82 16 17 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 18 C -0.55 -31.91 9.50 67.96 0.65 -31.27 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -56.69 13.22 21.65 0.29 -56.41 16 22 Si 1.00 44.11 29.55 68.60 2.03 46.13 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 26 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.97 6.03 -2.39 -0.01 0.96 16 30 H 0.05 0.76 6.40 -2.39 -0.02 0.75 16 31 H 0.06 0.75 5.37 -2.39 -0.01 0.73 16 32 H 0.06 0.74 7.94 -2.39 -0.02 0.72 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.34 5.16 -2.38 -0.01 1.33 16 35 H 0.08 0.89 8.11 -2.39 -0.02 0.87 16 36 H 0.05 0.50 5.48 -2.39 -0.01 0.49 16 37 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.10 7.37 -2.38 -0.02 1.08 16 43 H 0.06 1.47 5.45 -2.39 -0.01 1.46 16 44 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 45 H 0.42 9.60 7.45 -92.71 -0.69 8.91 16 46 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 47 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 48 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -73.19 373.01 0.71 -72.48 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.26 Total: 22.76 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 5.19 Total: -15.23 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -5.55 Total: -89.28 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -73.19 0.71 -72.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154079649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.743 kcal (2) G-P(sol) polarization free energy of solvation -73.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds