Wall clock time and date at job start Tue Mar 31 2020 10:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46754 * 2 1 4 4 C 1.53001 * 109.47088 * 240.00238 * 2 1 3 5 5 C 1.50697 * 109.47115 * 120.00256 * 2 1 3 6 6 C 1.38235 * 120.00250 * 60.00006 * 5 2 1 7 7 C 1.38235 * 119.99864 * 180.02562 * 6 5 2 8 8 C 1.38239 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99708 * 179.70245 * 8 7 6 10 10 C 1.52998 * 109.47109 * 90.00301 * 9 8 7 11 11 C 1.50700 * 109.47487 * 179.97438 * 10 9 8 12 12 O 1.21293 * 119.99773 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00177 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99650 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00480 * 17.71663 * 14 13 11 16 16 C 1.38949 * 119.99754 * 197.71990 * 14 13 11 17 17 N 1.31408 * 120.00234 * 21.39727 * 16 14 13 18 18 Si 1.86800 * 120.00137 * 201.40081 * 16 14 13 19 19 H 1.48499 * 109.47284 * 89.99731 * 18 16 14 20 20 H 1.48493 * 109.47384 * 210.00016 * 18 16 14 21 21 H 1.48500 * 109.47007 * 329.99791 * 18 16 14 22 22 C 1.46497 * 120.00104 * 359.97438 * 13 11 10 23 23 C 1.47193 * 109.46938 * 84.23576 * 22 13 11 24 24 N 8.75944 * 145.18692 * 121.60720 * 2 1 3 25 25 C 1.38227 * 120.00010 * 359.97438 * 8 7 6 26 26 C 1.38237 * 120.00236 * 0.04908 * 25 8 7 27 27 H 1.08998 * 109.47084 * 299.99513 * 1 2 3 28 28 H 1.09000 * 109.46821 * 60.00139 * 1 2 3 29 29 H 1.09002 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46921 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47343 * 299.99541 * 3 2 1 32 32 H 1.08998 * 109.47366 * 60.00086 * 3 2 1 33 33 H 1.09008 * 109.47080 * 299.99783 * 4 2 1 34 34 H 1.09000 * 109.47176 * 59.99767 * 4 2 1 35 35 H 1.08998 * 109.47283 * 180.02562 * 4 2 1 36 36 H 1.07998 * 119.99754 * 359.97438 * 6 5 2 37 37 H 1.08003 * 120.00037 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.47000 * 210.00226 * 9 8 7 39 39 H 1.08998 * 109.47499 * 330.00050 * 9 8 7 40 40 H 1.09005 * 109.47128 * 299.99847 * 10 9 8 41 41 H 1.08998 * 109.47145 * 59.99532 * 10 9 8 42 42 H 0.97002 * 120.00632 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.47433 * 204.23733 * 22 13 11 44 44 H 1.09003 * 109.47197 * 324.23269 * 22 13 11 45 45 H 1.08001 * 119.99893 * 179.97438 * 25 8 7 46 46 H 1.08001 * 120.00014 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.6985 -2.0339 1.4491 7 6 2.1589 -2.6854 2.5781 8 6 2.9536 -2.0135 3.4880 9 6 3.4500 -2.7218 4.7221 10 6 4.7961 -3.3845 4.4231 11 6 5.2929 -4.0924 5.6574 12 8 4.6350 -4.0686 6.6762 13 7 6.4685 -4.7508 5.6295 14 6 6.9200 -5.3952 6.7522 15 1 6.2353 -5.6251 7.5551 16 6 8.2587 -5.7523 6.8572 17 7 9.1620 -5.1372 6.1275 18 14 8.7743 -7.1071 8.0354 19 1 8.7374 -8.4148 7.3327 20 1 10.1533 -6.8440 8.5192 21 1 7.8421 -7.1395 9.1909 22 6 7.2633 -4.7790 4.3992 23 6 8.0862 -3.5613 4.3188 24 7 8.7218 -2.6209 4.2590 25 6 3.2884 -0.6905 3.2687 26 6 2.8276 -0.0388 2.1400 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7216 -1.2491 36 1 1.0772 -2.5586 0.7384 37 1 1.8977 -3.7193 2.7492 38 1 3.5715 -2.0009 5.5307 39 1 2.7284 -3.4828 5.0193 40 1 4.6746 -4.1054 3.6146 41 1 5.5177 -2.6236 4.1260 42 1 10.0966 -5.3867 6.2005 43 1 7.9110 -5.6556 4.4050 44 1 6.5974 -4.8251 3.5374 45 1 3.9090 -0.1655 3.9799 46 1 3.0889 0.9951 1.9690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162020532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:37 Heat of formation + Delta-G solvation = 2.246454 kcal Electronic energy + Delta-G solvation = -25421.138250 eV Core-core repulsion = 21889.346084 eV Total energy + Delta-G solvation = -3531.792166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.98824 -38.86161 -36.83818 -35.77446 -34.36158 -32.96222 -31.80025 -31.05879 -28.98115 -27.56182 -27.46332 -27.40589 -25.43277 -23.69059 -22.29299 -21.38712 -19.24908 -18.96668 -17.89329 -16.80976 -16.39745 -16.05482 -15.48339 -14.93374 -14.65452 -14.47255 -14.27984 -14.22460 -13.87282 -13.73819 -13.39165 -13.14177 -12.95608 -12.75137 -12.56648 -12.32931 -12.16159 -11.92664 -11.89653 -11.68821 -11.55578 -11.45622 -11.43037 -11.20380 -11.15855 -11.04798 -10.75529 -10.58451 -10.55391 -10.42769 -10.38687 -10.25570 -9.25714 -8.82225 -8.66321 -8.32581 -8.03660 -6.49794 -3.99162 1.42418 1.49861 3.10486 3.22527 3.26663 3.56496 3.78641 3.84374 3.99080 4.12821 4.43193 4.56407 4.74970 4.79568 4.89456 5.02413 5.08109 5.10766 5.15120 5.25266 5.33071 5.38828 5.49819 5.52917 5.53418 5.56801 5.63633 5.64780 5.70414 5.75542 5.81192 5.84744 5.94364 6.04722 6.08617 6.10756 6.16105 6.20262 6.34048 6.50856 6.54304 6.56902 6.66715 6.84960 7.11225 7.47800 7.91646 8.29165 8.74934 9.01416 9.21029 9.75590 10.56421 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025632 B = 0.002668 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.109775 B =10493.887074 C =10976.548942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.082 4.082 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.076 4.076 9 C -0.062 4.062 10 C -0.128 4.128 11 C 0.456 3.544 12 O -0.574 6.574 13 N -0.445 5.445 14 C -0.314 4.314 15 H 0.108 0.892 16 C 0.031 3.969 17 N -0.878 5.878 18 Si 0.927 3.073 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.222 3.778 23 C 0.246 3.754 24 N -0.473 5.473 25 C -0.114 4.114 26 C -0.120 4.120 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.273 0.727 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.721 5.730 -14.748 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.082 4.082 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.076 4.076 9 C -0.100 4.100 10 C -0.169 4.169 11 C 0.245 3.755 12 O -0.457 6.457 13 N -0.166 5.166 14 C -0.441 4.441 15 H 0.126 0.874 16 C -0.173 4.173 17 N -0.517 5.517 18 Si 0.754 3.246 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.194 1.194 22 C 0.094 3.906 23 C -0.072 4.072 24 N -0.154 5.154 25 C -0.132 4.132 26 C -0.138 4.138 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.144 0.856 44 H 0.101 0.899 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.898 7.103 -14.326 20.544 hybrid contribution 0.496 -0.989 0.607 1.262 sum -12.402 6.115 -13.719 19.478 Atomic orbital electron populations 1.21884 0.93899 1.01997 1.01676 1.19474 0.95525 0.94973 0.92904 1.21960 1.01315 0.95080 1.01752 1.21888 1.01378 1.00174 0.96083 1.19721 0.98455 0.94196 0.95855 1.20894 1.00545 0.94266 0.97597 1.21056 0.98166 0.99832 0.94240 1.20063 0.96840 0.94129 0.96557 1.20311 0.96144 0.99635 0.93910 1.21585 0.97351 1.00107 0.97830 1.20181 0.83786 0.81841 0.89714 1.90539 1.57805 1.63309 1.34068 1.43661 1.16871 1.46019 1.10010 1.19729 0.93697 1.32744 0.97904 0.87402 1.25274 0.95126 0.98390 0.98461 1.69862 1.02059 1.37910 1.41850 0.85901 0.77794 0.80681 0.80250 1.20162 1.21156 1.19361 1.18725 0.92139 0.91878 0.87858 1.29346 0.92858 0.93745 0.91265 1.80916 1.10659 1.13525 1.10255 1.21115 0.99899 0.94547 0.97679 1.21131 0.98287 0.99994 0.94365 0.92546 0.92568 0.92452 0.92207 0.92575 0.92293 0.92429 0.92570 0.92419 0.86528 0.86044 0.90504 0.90328 0.90010 0.90347 0.91660 0.85568 0.89854 0.86159 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.29 37.16 0.31 -0.74 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.12 7.13 37.16 0.26 -0.86 16 4 C -0.14 -1.09 8.29 37.16 0.31 -0.78 16 5 C -0.08 -0.89 4.76 -104.62 -0.50 -1.39 16 6 C -0.12 -1.26 8.71 -39.58 -0.34 -1.61 16 7 C -0.11 -1.40 9.70 -39.58 -0.38 -1.78 16 8 C -0.08 -1.04 5.13 -104.63 -0.54 -1.57 16 9 C -0.06 -0.98 4.63 -27.88 -0.13 -1.11 16 10 C -0.13 -2.19 4.29 -27.88 -0.12 -2.31 16 11 C 0.46 10.18 7.57 -10.99 -0.08 10.10 16 12 O -0.57 -14.81 15.63 5.55 0.09 -14.72 16 13 N -0.45 -10.33 2.60 -117.94 -0.31 -10.64 16 14 C -0.31 -8.07 9.32 -14.93 -0.14 -8.21 16 15 H 0.11 2.94 7.39 -52.49 -0.39 2.55 16 16 C 0.03 0.76 4.87 -17.47 -0.08 0.68 16 17 N -0.88 -22.19 9.48 55.50 0.53 -21.66 16 18 Si 0.93 19.65 29.60 -169.99 -5.03 14.61 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 C 0.22 4.38 4.91 -6.83 -0.03 4.35 16 23 C 0.25 5.45 12.95 -20.74 -0.27 5.18 16 24 N -0.47 -11.30 18.54 42.18 0.78 -10.52 16 25 C -0.11 -1.51 9.70 -39.59 -0.38 -1.89 16 26 C -0.12 -1.40 8.98 -39.58 -0.36 -1.75 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 30 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 33 H 0.06 0.44 7.39 -51.92 -0.38 0.06 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.12 1.06 7.10 -52.49 -0.37 0.69 16 37 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 39 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 40 H 0.08 1.19 7.42 -51.93 -0.39 0.80 16 41 H 0.08 1.36 7.51 -51.93 -0.39 0.97 16 42 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 43 H 0.13 2.55 6.46 -51.93 -0.34 2.22 16 44 H 0.08 1.26 6.68 -51.93 -0.35 0.92 16 45 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 46 H 0.12 1.23 5.90 -52.49 -0.31 0.92 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -30.47 376.74 -7.88 -38.36 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.00 Total: 2.95 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.61 Total: -4.06 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 1.00 Total: -42.82 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.09 Total: -14.72 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.47 -7.88 -38.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162020532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.606 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds