Wall clock time and date at job start Tue Mar 31 2020 10:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46754 * 2 1 4 4 C 1.53001 * 109.47088 * 240.00238 * 2 1 3 5 5 C 1.50697 * 109.47115 * 120.00256 * 2 1 3 6 6 C 1.38235 * 120.00250 * 60.00006 * 5 2 1 7 7 C 1.38235 * 119.99864 * 180.02562 * 6 5 2 8 8 C 1.38239 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99708 * 179.70245 * 8 7 6 10 10 C 1.52998 * 109.47109 * 90.00301 * 9 8 7 11 11 C 1.50700 * 109.47487 * 179.97438 * 10 9 8 12 12 O 1.21293 * 119.99773 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00177 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99650 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00480 * 17.71663 * 14 13 11 16 16 C 1.38949 * 119.99754 * 197.71990 * 14 13 11 17 17 N 1.31408 * 120.00234 * 21.39727 * 16 14 13 18 18 Si 1.86800 * 120.00137 * 201.40081 * 16 14 13 19 19 H 1.48499 * 109.47284 * 89.99731 * 18 16 14 20 20 H 1.48493 * 109.47384 * 210.00016 * 18 16 14 21 21 H 1.48500 * 109.47007 * 329.99791 * 18 16 14 22 22 C 1.46497 * 120.00104 * 359.97438 * 13 11 10 23 23 C 1.47193 * 109.46938 * 84.23576 * 22 13 11 24 24 N 8.75944 * 145.18692 * 121.60720 * 2 1 3 25 25 C 1.38227 * 120.00010 * 359.97438 * 8 7 6 26 26 C 1.38237 * 120.00236 * 0.04908 * 25 8 7 27 27 H 1.08998 * 109.47084 * 299.99513 * 1 2 3 28 28 H 1.09000 * 109.46821 * 60.00139 * 1 2 3 29 29 H 1.09002 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46921 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47343 * 299.99541 * 3 2 1 32 32 H 1.08998 * 109.47366 * 60.00086 * 3 2 1 33 33 H 1.09008 * 109.47080 * 299.99783 * 4 2 1 34 34 H 1.09000 * 109.47176 * 59.99767 * 4 2 1 35 35 H 1.08998 * 109.47283 * 180.02562 * 4 2 1 36 36 H 1.07998 * 119.99754 * 359.97438 * 6 5 2 37 37 H 1.08003 * 120.00037 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.47000 * 210.00226 * 9 8 7 39 39 H 1.08998 * 109.47499 * 330.00050 * 9 8 7 40 40 H 1.09005 * 109.47128 * 299.99847 * 10 9 8 41 41 H 1.08998 * 109.47145 * 59.99532 * 10 9 8 42 42 H 0.97002 * 120.00632 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.47433 * 204.23733 * 22 13 11 44 44 H 1.09003 * 109.47197 * 324.23269 * 22 13 11 45 45 H 1.08001 * 119.99893 * 179.97438 * 25 8 7 46 46 H 1.08001 * 120.00014 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.6985 -2.0339 1.4491 7 6 2.1589 -2.6854 2.5781 8 6 2.9536 -2.0135 3.4880 9 6 3.4500 -2.7218 4.7221 10 6 4.7961 -3.3845 4.4231 11 6 5.2929 -4.0924 5.6574 12 8 4.6350 -4.0686 6.6762 13 7 6.4685 -4.7508 5.6295 14 6 6.9200 -5.3952 6.7522 15 1 6.2353 -5.6251 7.5551 16 6 8.2587 -5.7523 6.8572 17 7 9.1620 -5.1372 6.1275 18 14 8.7743 -7.1071 8.0354 19 1 8.7374 -8.4148 7.3327 20 1 10.1533 -6.8440 8.5192 21 1 7.8421 -7.1395 9.1909 22 6 7.2633 -4.7790 4.3992 23 6 8.0862 -3.5613 4.3188 24 7 8.7218 -2.6209 4.2590 25 6 3.2884 -0.6905 3.2687 26 6 2.8276 -0.0388 2.1400 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7216 -1.2491 36 1 1.0772 -2.5586 0.7384 37 1 1.8977 -3.7193 2.7492 38 1 3.5715 -2.0009 5.5307 39 1 2.7284 -3.4828 5.0193 40 1 4.6746 -4.1054 3.6146 41 1 5.5177 -2.6236 4.1260 42 1 10.0966 -5.3867 6.2005 43 1 7.9110 -5.6556 4.4050 44 1 6.5974 -4.8251 3.5374 45 1 3.9090 -0.1655 3.9799 46 1 3.0889 0.9951 1.9690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162020532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:36 Heat of formation + Delta-G solvation = -11.799755 kcal Electronic energy + Delta-G solvation = -25421.747339 eV Core-core repulsion = 21889.346084 eV Total energy + Delta-G solvation = -3532.401255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97257 -40.47785 -37.82598 -37.44354 -36.18069 -34.25528 -33.60005 -31.94706 -30.16739 -29.09907 -28.19179 -28.04002 -27.02555 -25.09268 -23.18695 -22.43788 -20.66071 -19.99642 -19.73680 -18.29806 -18.01099 -17.18104 -16.60776 -16.47401 -15.96562 -15.78454 -15.58340 -15.11142 -14.92894 -14.71457 -14.57201 -14.41695 -14.33018 -14.03999 -13.79570 -13.64276 -13.37349 -13.18955 -13.12445 -12.89999 -12.82335 -12.59128 -12.48449 -12.37262 -12.34698 -12.30733 -12.13973 -12.09113 -11.81866 -11.74545 -11.41091 -11.28458 -11.11264 -10.43112 -9.92307 -9.74051 -9.33034 -8.40166 -5.96118 0.48422 0.57918 1.40064 1.48206 1.58358 1.81860 2.06505 2.24776 2.35910 2.86892 2.99992 3.15934 3.59523 3.70797 3.85923 3.87664 4.07682 4.16484 4.19440 4.22824 4.32390 4.38666 4.44746 4.52821 4.64486 4.67943 4.78305 4.83903 4.84505 4.89921 4.94737 5.01470 5.06059 5.07304 5.08158 5.20578 5.26394 5.27844 5.33334 5.42090 5.48960 5.49662 5.66127 5.80926 5.83936 6.04503 6.19579 6.40606 6.99695 7.12917 7.36462 7.93709 8.63599 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025632 B = 0.002668 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.109775 B =10493.887074 C =10976.548942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.080 4.080 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.090 4.090 9 C -0.053 4.053 10 C -0.115 4.115 11 C 0.449 3.551 12 O -0.617 6.617 13 N -0.457 5.457 14 C -0.341 4.341 15 H 0.082 0.918 16 C 0.004 3.996 17 N -0.893 5.893 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.222 3.778 23 C 0.258 3.742 24 N -0.509 5.509 25 C -0.130 4.130 26 C -0.127 4.127 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.274 0.726 43 H 0.124 0.876 44 H 0.138 0.862 45 H 0.113 0.887 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.629 5.245 -17.172 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.194 4.194 5 C -0.080 4.080 6 C -0.133 4.133 7 C -0.136 4.136 8 C -0.090 4.090 9 C -0.091 4.091 10 C -0.155 4.155 11 C 0.240 3.760 12 O -0.503 6.503 13 N -0.177 5.177 14 C -0.469 4.469 15 H 0.100 0.900 16 C -0.198 4.198 17 N -0.532 5.532 18 Si 0.812 3.188 19 H -0.183 1.183 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.096 3.904 23 C -0.060 4.060 24 N -0.189 5.189 25 C -0.148 4.148 26 C -0.145 4.145 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.142 0.858 44 H 0.155 0.845 45 H 0.131 0.869 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.800 6.620 -16.781 22.712 hybrid contribution 0.737 -0.778 1.352 1.726 sum -13.062 5.842 -15.429 21.042 Atomic orbital electron populations 1.21875 0.92978 1.02365 1.02081 1.19545 0.96196 0.95131 0.92077 1.21965 1.01024 0.94814 1.02362 1.21882 1.00788 1.00514 0.96209 1.20063 0.97324 0.94334 0.96240 1.21162 1.00274 0.94379 0.97461 1.21231 0.97624 1.00518 0.94186 1.19868 0.98484 0.94390 0.96308 1.20150 0.95443 0.99015 0.94483 1.21541 0.97707 1.00259 0.95981 1.21108 0.83097 0.81019 0.90826 1.90507 1.58963 1.64645 1.36191 1.43847 1.17390 1.45968 1.10512 1.19623 0.93905 1.34557 0.98794 0.90048 1.25895 0.94597 0.99522 0.99749 1.69944 1.02147 1.38394 1.42721 0.85014 0.76678 0.78907 0.78225 1.18285 1.21324 1.20327 1.19061 0.92571 0.90566 0.88234 1.29823 0.92257 0.93718 0.90196 1.80916 1.11868 1.14722 1.11429 1.21185 1.00506 0.94707 0.98395 1.21318 0.98402 1.00694 0.94049 0.93232 0.91130 0.92119 0.92703 0.91204 0.92508 0.92064 0.91140 0.93341 0.84284 0.84743 0.92784 0.90728 0.86536 0.90350 0.91594 0.85805 0.84505 0.86866 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.29 71.98 0.60 -1.10 16 2 C -0.03 -0.43 0.85 -52.93 -0.05 -0.48 16 3 C -0.14 -1.95 7.13 71.98 0.51 -1.43 16 4 C -0.14 -1.78 8.29 71.98 0.60 -1.18 16 5 C -0.08 -1.56 4.76 -19.87 -0.09 -1.65 16 6 C -0.12 -2.23 8.71 22.27 0.19 -2.04 16 7 C -0.12 -2.64 9.70 22.27 0.22 -2.42 16 8 C -0.09 -2.41 5.13 -19.87 -0.10 -2.51 16 9 C -0.05 -1.67 4.63 29.85 0.14 -1.53 16 10 C -0.11 -3.81 4.29 29.85 0.13 -3.68 16 11 C 0.45 20.19 7.57 87.66 0.66 20.86 16 12 O -0.62 -32.86 15.63 -3.07 -0.05 -32.91 16 13 N -0.46 -21.21 2.60 -645.44 -1.68 -22.88 16 14 C -0.34 -17.83 9.32 84.04 0.78 -17.05 16 15 H 0.08 4.61 7.39 -2.91 -0.02 4.59 16 16 C 0.00 0.22 4.87 84.93 0.41 0.63 16 17 N -0.89 -44.82 9.48 21.66 0.21 -44.62 16 18 Si 0.99 40.21 29.60 68.60 2.03 42.24 16 19 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 20 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 22 C 0.22 8.47 4.91 84.57 0.42 8.88 16 23 C 0.26 11.21 12.95 89.43 1.16 12.37 16 24 N -0.51 -24.14 18.54 20.01 0.37 -23.77 16 25 C -0.13 -3.39 9.70 22.27 0.22 -3.17 16 26 C -0.13 -2.82 8.98 22.27 0.20 -2.62 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.72 7.39 -2.39 -0.02 0.70 16 30 H 0.05 0.79 7.51 -2.39 -0.02 0.77 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.78 7.51 -2.39 -0.02 0.76 16 33 H 0.06 0.75 7.39 -2.38 -0.02 0.73 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.14 2.05 7.10 -2.91 -0.02 2.03 16 37 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.05 1.91 8.04 -2.38 -0.02 1.89 16 39 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 40 H 0.12 3.04 7.42 -2.38 -0.02 3.03 16 41 H 0.08 2.64 7.51 -2.39 -0.02 2.62 16 42 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 43 H 0.12 4.84 6.46 -2.39 -0.02 4.83 16 44 H 0.14 3.70 6.68 -2.39 -0.02 3.68 16 45 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 46 H 0.13 2.56 5.90 -2.91 -0.02 2.55 16 Total: -1.00 -66.88 376.74 7.84 -59.03 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.97 Total: 21.03 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.99 Total: 1.87 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -1.10 Total: -91.27 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.05 Total: -32.91 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -66.88 7.84 -59.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162020532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.234 kcal (2) G-P(sol) polarization free energy of solvation -66.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds