Wall clock time and date at job start Tue Mar 31 2020 11:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47290 * 2 1 4 4 C 1.53003 * 109.47076 * 120.00428 * 2 1 3 5 5 C 1.52997 * 109.46778 * 174.99949 * 4 2 1 6 6 N 1.46508 * 109.46695 * 179.97438 * 5 4 2 7 7 C 1.46500 * 119.99796 * 269.99549 * 6 5 4 8 8 C 1.50696 * 109.47435 * 270.00372 * 7 6 5 9 9 H 1.08004 * 120.00011 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00003 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00105 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99724 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47112 * 89.99818 * 12 10 8 14 14 H 1.48502 * 109.47020 * 209.99562 * 12 10 8 15 15 H 1.48494 * 109.47317 * 329.99700 * 12 10 8 16 16 C 1.34770 * 120.00035 * 90.00350 * 6 5 4 17 17 O 1.21281 * 120.00348 * 359.97438 * 16 6 5 18 18 C 1.50706 * 120.00011 * 179.97438 * 16 6 5 19 19 C 1.50696 * 109.46972 * 179.97438 * 18 16 6 20 20 C 1.38365 * 119.84509 * 90.00171 * 19 18 16 21 21 C 1.37947 * 120.14940 * 179.97438 * 20 19 18 22 22 C 1.39629 * 119.84839 * 359.97438 * 21 20 19 23 23 C 1.43205 * 120.15217 * 180.02562 * 22 21 20 24 24 N 9.65405 * 112.39916 * 232.25958 * 5 1 2 25 25 C 1.39630 * 119.69955 * 0.27680 * 22 21 20 26 26 C 1.37951 * 119.84578 * 359.46927 * 25 22 21 27 27 H 1.09003 * 109.47444 * 299.99876 * 1 2 3 28 28 H 1.08999 * 109.47399 * 60.00019 * 1 2 3 29 29 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47020 * 239.99997 * 2 1 3 31 31 H 1.08994 * 109.47356 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47335 * 300.00511 * 3 2 1 33 33 H 1.09008 * 109.46652 * 60.00149 * 3 2 1 34 34 H 1.08997 * 109.47030 * 54.99766 * 4 2 1 35 35 H 1.09003 * 109.46689 * 294.99724 * 4 2 1 36 36 H 1.08997 * 109.47489 * 60.00099 * 5 4 2 37 37 H 1.09003 * 109.47327 * 299.99385 * 5 4 2 38 38 H 1.08998 * 109.47249 * 30.00317 * 7 6 5 39 39 H 1.09000 * 109.47046 * 150.00300 * 7 6 5 40 40 H 0.96999 * 119.99722 * 180.02562 * 11 10 8 41 41 H 1.09000 * 109.46802 * 59.99772 * 18 16 6 42 42 H 1.08992 * 109.46939 * 299.99519 * 18 16 6 43 43 H 1.07992 * 119.92688 * 0.02562 * 20 19 18 44 44 H 1.08003 * 120.07687 * 179.97438 * 21 20 19 45 45 H 1.07999 * 120.08232 * 179.69881 * 25 22 21 46 46 H 1.08002 * 119.92809 * 180.23515 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0532 -1.5213 2.3843 7 6 4.4017 -0.7531 3.5821 8 6 5.8556 -0.3612 3.5222 9 1 6.4598 -0.6554 2.6767 10 6 6.4147 0.3719 4.5473 11 7 5.6792 0.7297 5.5772 12 14 8.2168 0.8583 4.4726 13 1 8.3470 2.1729 3.7943 14 1 8.7605 0.9566 5.8511 15 1 8.9754 -0.1679 3.7133 16 6 4.1820 -2.8629 2.3830 17 8 3.8931 -3.4989 1.3916 18 6 4.6849 -3.5728 3.6136 19 6 4.7349 -5.0561 3.3526 20 6 5.8848 -5.6258 2.8351 21 6 5.9377 -6.9830 2.5942 22 6 4.8275 -7.7823 2.8743 23 6 4.8755 -9.1921 2.6272 24 7 4.9144 -10.3102 2.4235 25 6 3.6686 -7.2000 3.3914 26 6 3.6312 -5.8422 3.6324 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6053 -1.7199 1.2951 35 1 1.7516 -0.1584 2.1370 36 1 3.9994 0.1674 1.1420 37 1 3.8532 -1.3941 0.3001 38 1 3.7852 0.1445 3.6302 39 1 4.2259 -1.3626 4.4685 40 1 6.0725 1.2457 6.2981 41 1 4.0127 -3.3735 4.4482 42 1 5.6841 -3.2126 3.8579 43 1 6.7431 -5.0067 2.6201 44 1 6.8357 -7.4264 2.1899 45 1 2.8047 -7.8117 3.6058 46 1 2.7368 -5.3910 4.0360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171548350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:01 Heat of formation + Delta-G solvation = -9.939048 kcal Electronic energy + Delta-G solvation = -25455.108343 eV Core-core repulsion = 21922.787774 eV Total energy + Delta-G solvation = -3532.320569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.86558 -38.81341 -36.71202 -36.33096 -34.75496 -32.83529 -32.56962 -31.05810 -29.63265 -27.78143 -27.09009 -26.78473 -23.57762 -23.10527 -22.73831 -21.93068 -19.76302 -18.90016 -18.38193 -16.69054 -16.37853 -15.90919 -15.62750 -15.00903 -14.98812 -14.51439 -14.44758 -14.25366 -14.02170 -13.72199 -13.55783 -13.44715 -12.90552 -12.85881 -12.64928 -12.48652 -12.40486 -12.09902 -11.99813 -11.76183 -11.61314 -11.45802 -11.28111 -11.15972 -10.97993 -10.90811 -10.81057 -10.66083 -10.48737 -10.28185 -10.11186 -9.77809 -9.22831 -8.98111 -8.67910 -8.55902 -7.76133 -6.25648 -4.33739 0.79439 1.40006 2.60114 2.92405 3.17601 3.25713 3.26923 3.35545 3.75999 3.87514 4.03476 4.28070 4.83802 4.87146 4.91026 5.04794 5.07278 5.10086 5.13548 5.38323 5.41329 5.43962 5.64557 5.71388 5.74405 5.74763 5.83890 5.88645 5.98126 5.99676 6.03583 6.09725 6.16576 6.23810 6.25026 6.29397 6.34252 6.37915 6.60375 6.65633 6.67149 6.73472 6.86302 7.10499 7.42426 7.47660 7.69262 7.97901 8.27956 8.71691 8.95453 9.35146 10.80760 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008464 B = 0.004145 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.149900 B = 6753.066648 C = 9428.434355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.594 5.594 7 C 0.236 3.764 8 C -0.541 4.541 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.895 3.105 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.520 3.480 17 O -0.568 6.568 18 C -0.109 4.109 19 C -0.015 4.015 20 C -0.107 4.107 21 C -0.068 4.068 22 C -0.047 4.047 23 C 0.264 3.736 24 N -0.435 5.435 25 C -0.068 4.068 26 C -0.110 4.110 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.266 0.734 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 -4.559 -4.065 8.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.165 4.165 5 C -0.003 4.003 6 N -0.324 5.324 7 C 0.116 3.884 8 C -0.579 4.579 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.722 3.278 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.308 3.692 17 O -0.449 6.449 18 C -0.148 4.148 19 C -0.016 4.016 20 C -0.125 4.125 21 C -0.088 4.088 22 C -0.051 4.051 23 C -0.051 4.051 24 N -0.110 5.110 25 C -0.089 4.089 26 C -0.128 4.128 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.151 0.849 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.499 -6.492 -4.696 9.718 hybrid contribution 1.017 1.010 0.255 1.456 sum -4.482 -5.482 -4.441 8.359 Atomic orbital electron populations 1.21822 0.95613 1.01427 1.01344 1.21045 0.95352 0.96361 0.98508 1.21903 1.01626 0.95841 1.01312 1.21984 0.96560 1.00401 0.97589 1.21350 0.92916 0.97651 0.88401 1.48223 1.62625 1.05784 1.15780 1.19446 0.95953 0.91663 0.81289 1.21492 0.95212 1.35182 1.06027 0.92058 1.24932 0.98246 0.95411 0.95076 1.69914 1.36232 1.37609 1.09014 0.86543 0.84667 0.79128 0.77440 1.20534 1.21041 1.19718 1.20177 0.77743 0.82509 0.88813 1.90629 1.52530 1.66271 1.35513 1.20808 1.05938 0.90104 0.97980 1.19835 0.93169 0.95006 0.93631 1.21011 0.98588 0.94181 0.98735 1.21081 0.96833 0.93467 0.97437 1.15942 0.96916 0.84625 1.07583 1.25868 0.93312 0.92765 0.93121 1.81270 1.08020 1.12098 1.09641 1.21055 0.96094 0.95110 0.96633 1.20957 0.98369 0.92861 1.00631 0.92794 0.93094 0.92926 0.91373 0.92096 0.93269 0.92614 0.92066 0.91824 0.90352 0.91224 0.94610 0.94367 0.92457 0.87871 0.86377 0.84860 0.85277 0.85322 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.09 -1.17 2.92 -90.62 -0.26 -1.43 16 3 C -0.15 -1.79 8.95 37.15 0.33 -1.45 16 4 C -0.13 -1.88 5.01 -26.73 -0.13 -2.02 16 5 C 0.12 2.06 5.16 -4.04 -0.02 2.04 16 6 N -0.59 -11.35 2.46 -175.06 -0.43 -11.78 16 7 C 0.24 5.10 4.96 -5.20 -0.03 5.07 16 8 C -0.54 -12.97 9.28 -34.44 -0.32 -13.29 16 9 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 10 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -23.09 13.29 55.43 0.74 -22.36 16 12 Si 0.89 19.42 29.54 -169.99 -5.02 14.40 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 C 0.52 9.64 7.67 -10.99 -0.08 9.55 16 17 O -0.57 -11.61 15.61 5.56 0.09 -11.52 16 18 C -0.11 -1.70 4.38 -29.03 -0.13 -1.83 16 19 C -0.02 -0.21 4.38 -104.53 -0.46 -0.67 16 20 C -0.11 -1.38 9.68 -39.64 -0.38 -1.76 16 21 C -0.07 -0.78 9.76 -39.17 -0.38 -1.16 16 22 C -0.05 -0.56 5.73 -106.93 -0.61 -1.17 16 23 C 0.26 3.36 15.34 -22.43 -0.34 3.02 16 24 N -0.43 -6.34 18.55 41.88 0.78 -5.56 16 25 C -0.07 -0.76 9.76 -39.17 -0.38 -1.14 16 26 C -0.11 -1.35 9.68 -39.64 -0.38 -1.73 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.36 6.49 -51.93 -0.34 1.02 16 37 H 0.07 1.23 7.42 -51.93 -0.39 0.85 16 38 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.04 0.83 6.44 -51.93 -0.33 0.50 16 40 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 41 H 0.10 1.49 7.34 -51.93 -0.38 1.11 16 42 H 0.12 1.93 7.94 -51.93 -0.41 1.52 16 43 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 45 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -27.85 391.82 -8.52 -36.38 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.23 Total: 2.19 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.35 Total: -7.65 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 1.08 Total: -39.69 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -27.85 -8.52 -36.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171548350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.436 kcal (2) G-P(sol) polarization free energy of solvation -27.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds