Wall clock time and date at job start Tue Mar 31 2020 11:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47290 * 2 1 4 4 C 1.53003 * 109.47076 * 120.00428 * 2 1 3 5 5 C 1.52997 * 109.46778 * 174.99949 * 4 2 1 6 6 N 1.46508 * 109.46695 * 179.97438 * 5 4 2 7 7 C 1.46500 * 119.99796 * 269.99549 * 6 5 4 8 8 C 1.50696 * 109.47435 * 270.00372 * 7 6 5 9 9 H 1.08004 * 120.00011 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00003 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00105 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99724 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47112 * 89.99818 * 12 10 8 14 14 H 1.48502 * 109.47020 * 209.99562 * 12 10 8 15 15 H 1.48494 * 109.47317 * 329.99700 * 12 10 8 16 16 C 1.34770 * 120.00035 * 90.00350 * 6 5 4 17 17 O 1.21281 * 120.00348 * 359.97438 * 16 6 5 18 18 C 1.50706 * 120.00011 * 179.97438 * 16 6 5 19 19 C 1.50696 * 109.46972 * 179.97438 * 18 16 6 20 20 C 1.38365 * 119.84509 * 90.00171 * 19 18 16 21 21 C 1.37947 * 120.14940 * 179.97438 * 20 19 18 22 22 C 1.39629 * 119.84839 * 359.97438 * 21 20 19 23 23 C 1.43205 * 120.15217 * 180.02562 * 22 21 20 24 24 N 9.65405 * 112.39916 * 232.25958 * 5 1 2 25 25 C 1.39630 * 119.69955 * 0.27680 * 22 21 20 26 26 C 1.37951 * 119.84578 * 359.46927 * 25 22 21 27 27 H 1.09003 * 109.47444 * 299.99876 * 1 2 3 28 28 H 1.08999 * 109.47399 * 60.00019 * 1 2 3 29 29 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47020 * 239.99997 * 2 1 3 31 31 H 1.08994 * 109.47356 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47335 * 300.00511 * 3 2 1 33 33 H 1.09008 * 109.46652 * 60.00149 * 3 2 1 34 34 H 1.08997 * 109.47030 * 54.99766 * 4 2 1 35 35 H 1.09003 * 109.46689 * 294.99724 * 4 2 1 36 36 H 1.08997 * 109.47489 * 60.00099 * 5 4 2 37 37 H 1.09003 * 109.47327 * 299.99385 * 5 4 2 38 38 H 1.08998 * 109.47249 * 30.00317 * 7 6 5 39 39 H 1.09000 * 109.47046 * 150.00300 * 7 6 5 40 40 H 0.96999 * 119.99722 * 180.02562 * 11 10 8 41 41 H 1.09000 * 109.46802 * 59.99772 * 18 16 6 42 42 H 1.08992 * 109.46939 * 299.99519 * 18 16 6 43 43 H 1.07992 * 119.92688 * 0.02562 * 20 19 18 44 44 H 1.08003 * 120.07687 * 179.97438 * 21 20 19 45 45 H 1.07999 * 120.08232 * 179.69881 * 25 22 21 46 46 H 1.08002 * 119.92809 * 180.23515 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0532 -1.5213 2.3843 7 6 4.4017 -0.7531 3.5821 8 6 5.8556 -0.3612 3.5222 9 1 6.4598 -0.6554 2.6767 10 6 6.4147 0.3719 4.5473 11 7 5.6792 0.7297 5.5772 12 14 8.2168 0.8583 4.4726 13 1 8.3470 2.1729 3.7943 14 1 8.7605 0.9566 5.8511 15 1 8.9754 -0.1679 3.7133 16 6 4.1820 -2.8629 2.3830 17 8 3.8931 -3.4989 1.3916 18 6 4.6849 -3.5728 3.6136 19 6 4.7349 -5.0561 3.3526 20 6 5.8848 -5.6258 2.8351 21 6 5.9377 -6.9830 2.5942 22 6 4.8275 -7.7823 2.8743 23 6 4.8755 -9.1921 2.6272 24 7 4.9144 -10.3102 2.4235 25 6 3.6686 -7.2000 3.3914 26 6 3.6312 -5.8422 3.6324 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6053 -1.7199 1.2951 35 1 1.7516 -0.1584 2.1370 36 1 3.9994 0.1674 1.1420 37 1 3.8532 -1.3941 0.3001 38 1 3.7852 0.1445 3.6302 39 1 4.2259 -1.3626 4.4685 40 1 6.0725 1.2457 6.2981 41 1 4.0127 -3.3735 4.4482 42 1 5.6841 -3.2126 3.8579 43 1 6.7431 -5.0067 2.6201 44 1 6.8357 -7.4264 2.1899 45 1 2.8047 -7.8117 3.6058 46 1 2.7368 -5.3910 4.0360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171548350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:00 Heat of formation + Delta-G solvation = -20.706305 kcal Electronic energy + Delta-G solvation = -25455.575247 eV Core-core repulsion = 21922.787774 eV Total energy + Delta-G solvation = -3532.787472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11798 -40.02738 -37.87883 -37.43603 -36.29773 -34.43007 -33.89877 -31.98981 -30.93131 -29.21297 -28.36225 -27.95118 -24.91408 -24.74169 -23.67580 -23.09068 -20.84480 -19.88313 -19.85896 -18.52795 -17.86410 -17.30084 -16.76621 -16.33248 -16.13759 -15.97690 -15.61573 -15.46002 -15.07572 -14.81461 -14.70286 -14.38710 -14.29196 -14.06007 -13.97074 -13.88131 -13.62284 -13.35016 -13.17239 -13.05117 -12.87067 -12.80061 -12.63697 -12.58149 -12.34408 -12.21727 -11.99908 -11.91504 -11.80756 -11.57220 -11.51476 -11.35031 -10.74302 -10.51297 -9.90406 -9.66581 -9.36877 -8.15692 -6.29724 -0.19907 0.47322 1.44698 1.48479 1.56188 1.58603 1.84379 1.89633 2.37539 2.51356 2.86111 2.96115 3.15215 3.80446 3.88576 3.91719 3.98398 4.01606 4.08128 4.12366 4.39033 4.41461 4.45206 4.63294 4.69634 4.73929 4.76578 4.80534 4.86231 4.89785 4.98290 5.02092 5.06968 5.11069 5.16544 5.19868 5.24548 5.30076 5.35225 5.36823 5.50435 5.54918 5.66678 5.71510 5.89531 5.92445 6.11451 6.42140 6.64393 6.87881 7.36644 7.48260 8.89310 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008464 B = 0.004145 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.149900 B = 6753.066648 C = 9428.434355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.115 4.115 5 C 0.119 3.881 6 N -0.600 5.600 7 C 0.253 3.747 8 C -0.544 4.544 9 H 0.053 0.947 10 C 0.026 3.974 11 N -0.918 5.918 12 Si 0.950 3.050 13 H -0.279 1.279 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.517 3.483 17 O -0.586 6.586 18 C -0.101 4.101 19 C -0.033 4.033 20 C -0.119 4.119 21 C -0.062 4.062 22 C -0.049 4.049 23 C 0.285 3.715 24 N -0.467 5.467 25 C -0.060 4.060 26 C -0.115 4.115 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.135 0.865 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 -4.952 -4.482 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.154 4.154 5 C -0.004 4.004 6 N -0.329 5.329 7 C 0.132 3.868 8 C -0.583 4.583 9 H 0.071 0.929 10 C -0.174 4.174 11 N -0.557 5.557 12 Si 0.776 3.224 13 H -0.205 1.205 14 H -0.208 1.208 15 H -0.193 1.193 16 C 0.306 3.694 17 O -0.469 6.469 18 C -0.141 4.141 19 C -0.034 4.034 20 C -0.137 4.137 21 C -0.082 4.082 22 C -0.053 4.053 23 C -0.029 4.029 24 N -0.143 5.143 25 C -0.081 4.081 26 C -0.133 4.133 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.153 0.847 44 H 0.168 0.832 45 H 0.172 0.828 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.721 -6.889 -5.125 10.318 hybrid contribution 1.070 1.129 0.351 1.594 sum -4.651 -5.761 -4.774 8.810 Atomic orbital electron populations 1.21789 0.94069 1.01761 1.02231 1.21037 0.96614 0.96302 0.97048 1.21882 1.00900 0.95612 1.02083 1.21867 0.94696 1.00089 0.98727 1.21432 0.94492 0.97011 0.87469 1.48248 1.62916 1.06171 1.15594 1.19090 0.94467 0.91075 0.82179 1.21675 0.96227 1.34852 1.05554 0.92883 1.25558 1.01549 0.95491 0.94850 1.69995 1.37654 1.38409 1.09612 0.85676 0.80704 0.78672 0.77364 1.20513 1.20804 1.19311 1.20647 0.77107 0.82151 0.89486 1.90607 1.53356 1.66429 1.36479 1.20721 1.05209 0.91335 0.96788 1.19824 0.94426 0.93992 0.95173 1.21109 0.98530 0.94920 0.99145 1.21261 0.97554 0.92832 0.96597 1.16019 0.97370 0.84090 1.07807 1.25863 0.92303 0.92599 0.92132 1.81299 1.09113 1.13039 1.10840 1.21302 0.96621 0.94834 0.95300 1.21129 0.98335 0.93278 1.00544 0.92736 0.91394 0.92895 0.91230 0.93217 0.91334 0.92996 0.93007 0.92547 0.90859 0.91825 0.96353 0.94574 0.92394 0.86973 0.87419 0.84702 0.83232 0.82819 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.19 71.98 0.66 -2.19 16 2 C -0.09 -2.18 2.92 -10.79 -0.03 -2.21 16 3 C -0.15 -3.39 8.95 71.98 0.64 -2.74 16 4 C -0.12 -3.43 5.01 30.59 0.15 -3.28 16 5 C 0.12 4.14 5.16 86.38 0.45 4.58 16 6 N -0.60 -23.23 2.46 -826.15 -2.03 -25.26 16 7 C 0.25 11.08 4.96 85.63 0.43 11.50 16 8 C -0.54 -26.32 9.28 25.60 0.24 -26.08 16 9 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 10 C 0.03 1.30 5.46 84.65 0.46 1.76 16 11 N -0.92 -47.77 13.29 21.45 0.28 -47.49 16 12 Si 0.95 39.59 29.54 68.60 2.03 41.62 16 13 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 16 C 0.52 19.26 7.67 87.66 0.67 19.93 16 17 O -0.59 -23.91 15.61 -3.03 -0.05 -23.96 16 18 C -0.10 -3.16 4.38 29.10 0.13 -3.03 16 19 C -0.03 -0.89 4.38 -19.81 -0.09 -0.97 16 20 C -0.12 -2.95 9.68 22.23 0.22 -2.74 16 21 C -0.06 -1.32 9.76 22.54 0.22 -1.10 16 22 C -0.05 -1.06 5.73 -21.36 -0.12 -1.18 16 23 C 0.29 6.75 15.34 88.32 1.35 8.10 16 24 N -0.47 -12.98 18.55 19.02 0.35 -12.63 16 25 C -0.06 -1.20 9.76 22.54 0.22 -0.98 16 26 C -0.11 -2.62 9.68 22.23 0.22 -2.41 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.24 6.56 -2.39 -0.02 1.22 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 2.60 6.49 -2.39 -0.02 2.58 16 37 H 0.06 2.28 7.42 -2.39 -0.02 2.26 16 38 H 0.02 0.87 8.07 -2.39 -0.02 0.85 16 39 H 0.04 1.60 6.44 -2.39 -0.02 1.59 16 40 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 41 H 0.11 3.23 7.34 -2.39 -0.02 3.22 16 42 H 0.11 3.58 7.94 -2.39 -0.02 3.56 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 44 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 45 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -58.33 391.82 7.36 -50.97 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.96 Total: 19.80 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 5.81 Total: -3.05 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -1.39 Total: -85.37 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -58.33 7.36 -50.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171548350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.260 kcal (2) G-P(sol) polarization free energy of solvation -58.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds