Wall clock time and date at job start Tue Mar 31 2020 11:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47229 * 2 1 4 4 C 1.53003 * 109.46748 * 119.99909 * 2 1 3 5 5 C 1.53001 * 109.46948 * 175.00029 * 4 2 1 6 6 N 1.46497 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00300 * 274.96426 * 6 5 4 8 8 C 1.50704 * 109.47284 * 269.99931 * 7 6 5 9 9 H 1.08000 * 119.99835 * 0.02562 * 8 7 6 10 10 C 1.37870 * 119.99996 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00198 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00182 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46892 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47311 * 120.00147 * 12 10 8 15 15 H 1.48498 * 109.47259 * 240.00655 * 12 10 8 16 16 C 1.34780 * 119.99975 * 94.96670 * 6 5 4 17 17 O 1.21589 * 120.00226 * 185.55279 * 16 6 5 18 18 C 1.47506 * 119.99662 * 5.27717 * 16 6 5 19 19 C 1.39343 * 120.21168 * 55.28779 * 18 16 6 20 20 C 1.38322 * 120.50259 * 179.97438 * 19 18 16 21 21 C 1.37909 * 120.58743 * 0.02562 * 20 19 18 22 22 C 1.39543 * 119.99044 * 359.97438 * 21 20 19 23 23 C 1.46576 * 133.95226 * 179.97438 * 22 21 20 24 24 C 1.34207 * 106.88728 * 180.02562 * 23 22 21 25 25 N 1.36906 * 109.88872 * 359.97438 * 24 23 22 26 26 H 0.96994 * 125.01842 * 180.02562 * 25 24 23 27 27 C 1.37118 * 109.96827 * 359.74400 * 25 24 23 28 28 H 1.08997 * 109.47276 * 300.00271 * 1 2 3 29 29 H 1.09008 * 109.46883 * 60.00041 * 1 2 3 30 30 H 1.09004 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47276 * 239.99729 * 2 1 3 32 32 H 1.09000 * 109.46859 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46701 * 299.99530 * 3 2 1 34 34 H 1.08997 * 109.47213 * 59.99690 * 3 2 1 35 35 H 1.08999 * 109.47226 * 55.00085 * 4 2 1 36 36 H 1.09003 * 109.46967 * 294.99364 * 4 2 1 37 37 H 1.08999 * 109.47112 * 59.99985 * 5 4 2 38 38 H 1.08997 * 109.47301 * 299.99900 * 5 4 2 39 39 H 1.08994 * 109.47094 * 29.99841 * 7 6 5 40 40 H 1.08995 * 109.47102 * 150.00209 * 7 6 5 41 41 H 0.96999 * 119.99727 * 180.02562 * 11 10 8 42 42 H 1.08001 * 119.74895 * 0.02562 * 19 18 16 43 43 H 1.07994 * 119.70700 * 180.02562 * 20 19 18 44 44 H 1.07998 * 120.00455 * 179.97438 * 21 20 19 45 45 H 1.07996 * 126.55278 * 0.04182 * 23 22 21 46 46 H 1.08001 * 125.05500 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8311 1.1881 6 7 4.0530 -1.5211 2.3845 7 6 4.2980 -0.7671 3.6164 8 6 5.7216 -0.2726 3.6282 9 1 6.3780 -0.4973 2.8005 10 6 6.1855 0.4674 4.6949 11 7 5.3859 0.7413 5.7026 12 14 7.9499 1.0809 4.7092 13 1 8.6367 0.6417 3.4679 14 1 7.9577 2.5641 4.7804 15 1 8.6578 0.5248 5.8903 16 6 4.2770 -2.8498 2.3520 17 8 4.5849 -3.4396 3.3697 18 6 4.1428 -3.5894 1.0828 19 6 4.8670 -3.1929 -0.0397 20 6 4.7461 -3.8824 -1.2328 21 6 3.9072 -4.9725 -1.3314 22 6 3.1714 -5.3891 -0.2213 23 6 2.2146 -6.4738 0.0163 24 6 1.8272 -6.3783 1.2977 25 7 2.4587 -5.3220 1.8976 26 1 2.3393 -5.0544 2.8223 27 6 3.2896 -4.7021 1.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -1.7198 1.2952 36 1 1.7516 -0.1582 2.1370 37 1 3.9994 0.1675 1.1422 38 1 3.8531 -1.3940 0.3004 39 1 3.6177 0.0832 3.6633 40 1 4.1310 -1.4139 4.4776 41 1 5.7123 1.2623 6.4529 42 1 5.5283 -2.3413 0.0224 43 1 5.3137 -3.5643 -2.0946 44 1 3.8197 -5.5037 -2.2676 45 1 1.8846 -7.2093 -0.7024 46 1 1.1228 -7.0372 1.7836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173063884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:44 Heat of formation + Delta-G solvation = 7.247749 kcal Electronic energy + Delta-G solvation = -26717.823313 eV Core-core repulsion = 23186.248019 eV Total energy + Delta-G solvation = -3531.575293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23581 -39.04152 -36.72527 -36.56214 -34.47555 -32.70451 -31.78568 -29.43808 -29.08538 -28.74179 -27.11023 -26.88488 -24.02353 -23.27851 -22.23619 -21.64878 -20.74929 -19.77980 -18.98048 -17.44730 -16.70408 -16.41599 -15.85420 -15.66730 -14.96316 -14.84228 -14.47549 -14.33403 -14.12146 -13.90625 -13.65753 -13.37694 -12.97299 -12.77759 -12.59143 -12.47881 -12.16260 -12.10878 -11.80578 -11.64062 -11.48096 -11.33226 -11.19943 -11.03544 -10.83270 -10.79475 -10.55114 -10.51693 -10.28959 -10.13368 -9.61500 -9.60159 -8.97404 -8.45384 -8.13948 -7.74253 -7.53907 -6.06136 -4.10961 1.02728 1.73670 2.69399 3.25253 3.28733 3.35971 3.38620 3.42724 3.86507 4.06364 4.43611 4.74854 4.84393 5.00968 5.04957 5.08805 5.16218 5.20075 5.28034 5.35142 5.47570 5.51228 5.61329 5.69777 5.78116 5.84004 5.85760 5.89534 5.95986 5.99366 6.05607 6.08498 6.22895 6.23650 6.33646 6.49699 6.55988 6.60869 6.61713 6.74449 6.79875 7.05784 7.21679 7.41617 7.52537 7.58943 7.90440 8.21119 8.38401 8.86072 9.03266 9.54354 11.01878 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010864 B = 0.004847 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.698871 B = 5775.619828 C = 7015.637077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.128 4.128 5 C 0.100 3.900 6 N -0.586 5.586 7 C 0.245 3.755 8 C -0.526 4.526 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.548 3.452 17 O -0.543 6.543 18 C -0.121 4.121 19 C -0.070 4.070 20 C -0.151 4.151 21 C -0.063 4.063 22 C -0.116 4.116 23 C -0.209 4.209 24 C 0.051 3.949 25 N -0.587 5.587 26 H 0.420 0.580 27 C 0.136 3.864 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.145 0.855 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 -7.705 -15.320 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.167 4.167 5 C -0.024 4.024 6 N -0.316 5.316 7 C 0.126 3.874 8 C -0.565 4.565 9 H 0.076 0.924 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.725 3.275 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.335 3.665 17 O -0.422 6.422 18 C -0.126 4.126 19 C -0.090 4.090 20 C -0.170 4.170 21 C -0.082 4.082 22 C -0.121 4.121 23 C -0.234 4.234 24 C -0.076 4.076 25 N -0.188 5.188 26 H 0.258 0.742 27 C 0.026 3.974 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.163 0.837 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.636 -7.870 -14.431 19.054 hybrid contribution 0.919 0.546 0.595 1.223 sum -8.717 -7.323 -13.837 17.919 Atomic orbital electron populations 1.21820 0.95594 1.01356 1.01440 1.21034 0.95378 0.96466 0.98228 1.21905 1.01669 0.95744 1.01406 1.22024 0.96380 1.00225 0.98058 1.21789 0.93337 0.98798 0.88442 1.48184 1.62504 1.06608 1.14254 1.19299 0.96390 0.90849 0.80814 1.21461 0.96791 1.33143 1.05065 0.92366 1.24924 0.97844 0.96048 0.95198 1.69945 1.35598 1.39328 1.08453 0.86457 0.84632 0.78278 0.78162 1.19733 1.20938 1.20884 1.18177 0.78192 0.82585 0.87580 1.90757 1.48405 1.68228 1.34835 1.19150 1.01199 0.96552 0.95742 1.20995 0.97813 0.99144 0.91048 1.20764 1.01289 0.97229 0.97715 1.20549 0.94919 0.95970 0.96749 1.19157 1.01504 0.98253 0.93146 1.21625 1.03647 1.01896 0.96218 1.21848 0.99682 0.92041 0.94005 1.41809 1.37331 1.26643 1.13039 0.74215 1.17953 0.94701 0.94882 0.89846 0.92764 0.92998 0.93043 0.91324 0.92026 0.93197 0.92552 0.92618 0.91462 0.89986 0.90441 0.94871 0.93896 0.92781 0.85032 0.85653 0.86040 0.83678 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.09 -1.11 2.92 -90.62 -0.26 -1.38 16 3 C -0.15 -1.77 8.95 37.16 0.33 -1.44 16 4 C -0.13 -1.91 5.01 -26.73 -0.13 -2.05 16 5 C 0.10 1.70 4.98 -4.04 -0.02 1.68 16 6 N -0.59 -12.58 2.46 -176.31 -0.43 -13.01 16 7 C 0.25 6.41 5.23 -5.19 -0.03 6.38 16 8 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 12 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.55 11.95 7.13 -12.48 -0.09 11.86 16 17 O -0.54 -14.01 16.63 5.29 0.09 -13.92 16 18 C -0.12 -2.15 4.91 -104.87 -0.51 -2.66 16 19 C -0.07 -1.07 7.46 -39.14 -0.29 -1.37 16 20 C -0.15 -1.89 10.00 -39.67 -0.40 -2.28 16 21 C -0.06 -0.78 10.09 -39.22 -0.40 -1.18 16 22 C -0.12 -1.64 6.37 -105.14 -0.67 -2.31 16 23 C -0.21 -2.42 11.09 -37.64 -0.42 -2.84 16 24 C 0.05 0.56 11.82 -16.71 -0.20 0.37 16 25 N -0.59 -8.36 6.04 -10.45 -0.06 -8.42 16 26 H 0.42 5.94 8.96 -40.82 -0.37 5.57 16 27 C 0.14 2.21 6.99 -83.76 -0.59 1.63 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.42 6.53 -51.93 -0.34 1.09 16 38 H 0.08 1.18 4.42 -51.93 -0.23 0.95 16 39 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 40 H 0.04 1.27 7.35 -51.93 -0.38 0.88 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.13 1.97 7.57 -52.49 -0.40 1.57 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -33.50 379.21 -9.82 -43.32 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.09 Total: 5.54 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -3.75 Total: -10.31 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.24 Total: -47.17 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.50 -9.82 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173063884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.569 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds