Wall clock time and date at job start Tue Mar 31 2020 11:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47229 * 2 1 4 4 C 1.53003 * 109.46748 * 119.99909 * 2 1 3 5 5 C 1.53001 * 109.46948 * 175.00029 * 4 2 1 6 6 N 1.46497 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00300 * 274.96426 * 6 5 4 8 8 C 1.50704 * 109.47284 * 269.99931 * 7 6 5 9 9 H 1.08000 * 119.99835 * 0.02562 * 8 7 6 10 10 C 1.37870 * 119.99996 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00198 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00182 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46892 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47311 * 120.00147 * 12 10 8 15 15 H 1.48498 * 109.47259 * 240.00655 * 12 10 8 16 16 C 1.34780 * 119.99975 * 94.96670 * 6 5 4 17 17 O 1.21589 * 120.00226 * 185.55279 * 16 6 5 18 18 C 1.47506 * 119.99662 * 5.27717 * 16 6 5 19 19 C 1.39343 * 120.21168 * 55.28779 * 18 16 6 20 20 C 1.38322 * 120.50259 * 179.97438 * 19 18 16 21 21 C 1.37909 * 120.58743 * 0.02562 * 20 19 18 22 22 C 1.39543 * 119.99044 * 359.97438 * 21 20 19 23 23 C 1.46576 * 133.95226 * 179.97438 * 22 21 20 24 24 C 1.34207 * 106.88728 * 180.02562 * 23 22 21 25 25 N 1.36906 * 109.88872 * 359.97438 * 24 23 22 26 26 H 0.96994 * 125.01842 * 180.02562 * 25 24 23 27 27 C 1.37118 * 109.96827 * 359.74400 * 25 24 23 28 28 H 1.08997 * 109.47276 * 300.00271 * 1 2 3 29 29 H 1.09008 * 109.46883 * 60.00041 * 1 2 3 30 30 H 1.09004 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47276 * 239.99729 * 2 1 3 32 32 H 1.09000 * 109.46859 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46701 * 299.99530 * 3 2 1 34 34 H 1.08997 * 109.47213 * 59.99690 * 3 2 1 35 35 H 1.08999 * 109.47226 * 55.00085 * 4 2 1 36 36 H 1.09003 * 109.46967 * 294.99364 * 4 2 1 37 37 H 1.08999 * 109.47112 * 59.99985 * 5 4 2 38 38 H 1.08997 * 109.47301 * 299.99900 * 5 4 2 39 39 H 1.08994 * 109.47094 * 29.99841 * 7 6 5 40 40 H 1.08995 * 109.47102 * 150.00209 * 7 6 5 41 41 H 0.96999 * 119.99727 * 180.02562 * 11 10 8 42 42 H 1.08001 * 119.74895 * 0.02562 * 19 18 16 43 43 H 1.07994 * 119.70700 * 180.02562 * 20 19 18 44 44 H 1.07998 * 120.00455 * 179.97438 * 21 20 19 45 45 H 1.07996 * 126.55278 * 0.04182 * 23 22 21 46 46 H 1.08001 * 125.05500 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8311 1.1881 6 7 4.0530 -1.5211 2.3845 7 6 4.2980 -0.7671 3.6164 8 6 5.7216 -0.2726 3.6282 9 1 6.3780 -0.4973 2.8005 10 6 6.1855 0.4674 4.6949 11 7 5.3859 0.7413 5.7026 12 14 7.9499 1.0809 4.7092 13 1 8.6367 0.6417 3.4679 14 1 7.9577 2.5641 4.7804 15 1 8.6578 0.5248 5.8903 16 6 4.2770 -2.8498 2.3520 17 8 4.5849 -3.4396 3.3697 18 6 4.1428 -3.5894 1.0828 19 6 4.8670 -3.1929 -0.0397 20 6 4.7461 -3.8824 -1.2328 21 6 3.9072 -4.9725 -1.3314 22 6 3.1714 -5.3891 -0.2213 23 6 2.2146 -6.4738 0.0163 24 6 1.8272 -6.3783 1.2977 25 7 2.4587 -5.3220 1.8976 26 1 2.3393 -5.0544 2.8223 27 6 3.2896 -4.7021 1.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -1.7198 1.2952 36 1 1.7516 -0.1582 2.1370 37 1 3.9994 0.1675 1.1422 38 1 3.8531 -1.3940 0.3004 39 1 3.6177 0.0832 3.6633 40 1 4.1310 -1.4139 4.4776 41 1 5.7123 1.2623 6.4529 42 1 5.5283 -2.3413 0.0224 43 1 5.3137 -3.5643 -2.0946 44 1 3.8197 -5.5037 -2.2676 45 1 1.8846 -7.2093 -0.7024 46 1 1.1228 -7.0372 1.7836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173063884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:43 Heat of formation + Delta-G solvation = -11.838804 kcal Electronic energy + Delta-G solvation = -26718.650968 eV Core-core repulsion = 23186.248019 eV Total energy + Delta-G solvation = -3532.402949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.32282 -40.61926 -38.05811 -37.66055 -36.14477 -34.71906 -32.99115 -30.72185 -30.42352 -29.79071 -28.77276 -27.97871 -25.66626 -24.80046 -23.64778 -22.71950 -21.80945 -20.85983 -20.38295 -18.67860 -18.64571 -18.03663 -17.43674 -16.87913 -16.51537 -16.09511 -15.79818 -15.76536 -15.33736 -15.03633 -14.88822 -14.64785 -14.35560 -14.21262 -13.86937 -13.73316 -13.57106 -13.41743 -13.15657 -12.95811 -12.76292 -12.69923 -12.64922 -12.55691 -12.31161 -12.26924 -12.09324 -11.87263 -11.62501 -11.55550 -11.44296 -10.82377 -10.68466 -10.54706 -9.51199 -9.19505 -8.63814 -8.25915 -6.41454 -0.08308 0.66752 1.34059 1.36379 1.48368 1.60858 1.93291 2.23392 2.26621 2.40512 2.91247 3.03471 3.54672 3.84864 3.88655 3.97845 4.06861 4.10244 4.13857 4.28347 4.35981 4.49516 4.54063 4.65688 4.69808 4.78407 4.80630 4.87908 4.91153 4.95211 5.01002 5.04775 5.07971 5.11535 5.13248 5.18487 5.31119 5.44735 5.47496 5.50601 5.54797 5.58164 5.78119 5.80995 5.84587 6.00946 6.19368 6.54682 6.63560 6.69728 7.19740 7.35480 8.81401 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010864 B = 0.004847 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.698871 B = 5775.619828 C = 7015.637077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.118 4.118 5 C 0.101 3.899 6 N -0.589 5.589 7 C 0.263 3.737 8 C -0.543 4.543 9 H 0.054 0.946 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.968 3.032 13 H -0.266 1.266 14 H -0.267 1.267 15 H -0.281 1.281 16 C 0.545 3.455 17 O -0.599 6.599 18 C -0.152 4.152 19 C -0.075 4.075 20 C -0.146 4.146 21 C -0.048 4.048 22 C -0.128 4.128 23 C -0.207 4.207 24 C 0.050 3.950 25 N -0.600 5.600 26 H 0.414 0.586 27 C 0.107 3.893 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.022 0.978 40 H -0.003 1.003 41 H 0.268 0.732 42 H 0.127 0.873 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.180 0.820 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 -8.620 -19.120 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 C -0.207 4.207 4 C -0.157 4.157 5 C -0.021 4.021 6 N -0.318 5.318 7 C 0.142 3.858 8 C -0.582 4.582 9 H 0.072 0.928 10 C -0.189 4.189 11 N -0.567 5.567 12 Si 0.792 3.208 13 H -0.190 1.190 14 H -0.192 1.192 15 H -0.207 1.207 16 C 0.334 3.666 17 O -0.482 6.482 18 C -0.158 4.158 19 C -0.095 4.095 20 C -0.165 4.165 21 C -0.066 4.066 22 C -0.133 4.133 23 C -0.231 4.231 24 C -0.075 4.075 25 N -0.201 5.201 26 H 0.250 0.750 27 C -0.003 4.003 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.040 0.960 40 H 0.015 0.985 41 H 0.076 0.924 42 H 0.145 0.855 43 H 0.179 0.821 44 H 0.179 0.821 45 H 0.197 0.803 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.823 -8.780 -18.290 22.541 hybrid contribution 0.901 0.747 1.756 2.111 sum -8.921 -8.033 -16.533 20.432 Atomic orbital electron populations 1.21794 0.94287 1.01697 1.02131 1.21013 0.96406 0.96236 0.96757 1.21902 1.01136 0.95669 1.01962 1.21925 0.94808 0.99954 0.98991 1.22007 0.94560 0.98221 0.87337 1.48161 1.62579 1.06942 1.14085 1.18736 0.95626 0.89696 0.81704 1.21694 0.97538 1.33605 1.05324 0.92784 1.25857 1.02496 0.96001 0.94582 1.70065 1.37757 1.39814 1.09083 0.85357 0.78817 0.78367 0.78232 1.18968 1.19219 1.20731 1.18917 0.76579 0.82359 0.88707 1.90697 1.50870 1.69273 1.37349 1.18872 1.04573 0.98030 0.94311 1.21105 0.97330 0.99524 0.91512 1.21107 1.01286 0.96731 0.97369 1.21054 0.92873 0.95171 0.97547 1.19646 1.02256 0.98717 0.92662 1.22062 1.02615 1.01602 0.96849 1.22588 0.99474 0.91187 0.94246 1.42054 1.37709 1.27575 1.12810 0.75023 1.18223 0.95386 0.95112 0.91574 0.93495 0.90888 0.92903 0.89815 0.92873 0.90813 0.93806 0.93263 0.93809 0.90618 0.88125 0.96022 0.98517 0.92353 0.85509 0.82062 0.82083 0.80293 0.77621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.19 71.98 0.66 -2.19 16 2 C -0.09 -1.97 2.92 -10.79 -0.03 -2.00 16 3 C -0.15 -3.41 8.95 71.98 0.64 -2.77 16 4 C -0.12 -3.67 5.01 30.60 0.15 -3.51 16 5 C 0.10 3.56 4.98 86.38 0.43 3.99 16 6 N -0.59 -27.15 2.46 -829.98 -2.04 -29.19 16 7 C 0.26 14.87 5.23 85.63 0.45 15.31 16 8 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 9 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 10 C 0.01 0.57 5.46 84.65 0.46 1.03 16 11 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 12 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 16 C 0.54 25.48 7.13 86.69 0.62 26.09 16 17 O -0.60 -33.55 16.63 -4.00 -0.07 -33.62 16 18 C -0.15 -5.57 4.91 -20.03 -0.10 -5.67 16 19 C -0.08 -2.25 7.46 22.56 0.17 -2.08 16 20 C -0.15 -3.18 10.00 22.21 0.22 -2.96 16 21 C -0.05 -0.99 10.09 22.51 0.23 -0.77 16 22 C -0.13 -3.29 6.37 -20.20 -0.13 -3.41 16 23 C -0.21 -4.11 11.09 23.53 0.26 -3.85 16 24 C 0.05 1.01 11.82 82.98 0.98 1.99 16 25 N -0.60 -17.34 6.04 -186.97 -1.13 -18.47 16 26 H 0.41 12.56 8.96 -92.71 -0.83 11.73 16 27 C 0.11 3.48 6.99 39.45 0.28 3.76 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.29 6.56 -2.39 -0.02 1.27 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 2.75 6.53 -2.39 -0.02 2.73 16 38 H 0.10 3.09 4.42 -2.39 -0.01 3.08 16 39 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 40 H 0.00 -0.21 7.35 -2.39 -0.02 -0.23 16 41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.13 3.79 7.57 -2.91 -0.02 3.77 16 43 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 44 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 46 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -78.54 379.21 4.76 -73.78 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.15 Total: 25.55 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.53 Total: -8.94 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -2.88 Total: -104.39 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.07 Total: -33.62 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -78.54 4.76 -73.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173063884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.942 kcal (2) G-P(sol) polarization free energy of solvation -78.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds