Wall clock time and date at job start Tue Mar 31 2020 10:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 C 1.52997 * 109.47218 * 239.99905 * 2 1 3 5 5 C 1.50694 * 109.47238 * 59.99771 * 4 2 1 6 6 H 1.07999 * 120.00276 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00094 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00092 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47537 * 119.99834 * 9 7 5 12 12 H 1.48504 * 109.46904 * 240.00316 * 9 7 5 13 13 C 1.53001 * 109.47261 * 119.99912 * 2 1 3 14 14 N 1.46905 * 109.47053 * 299.99711 * 13 2 1 15 15 C 1.46899 * 110.99911 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.47029 * 180.02562 * 15 14 13 17 17 C 1.41003 * 126.70263 * 95.00200 * 16 15 14 18 18 C 1.36831 * 103.88282 * 179.97438 * 17 16 15 19 19 C 1.47844 * 126.92395 * 179.97438 * 18 17 16 20 20 C 1.39567 * 120.13817 * 179.97438 * 19 18 17 21 21 C 1.37963 * 119.85204 * 180.02562 * 20 19 18 22 22 C 1.38355 * 120.14529 * 359.97438 * 21 20 19 23 23 C 1.38355 * 120.29228 * 0.02562 * 22 21 20 24 24 C 1.37966 * 120.14247 * 0.02562 * 23 22 21 25 25 O 1.34491 * 106.14680 * 0.26326 * 18 17 16 26 26 N 1.20895 * 111.45277 * 359.52731 * 25 18 17 27 27 H 1.09003 * 109.47093 * 300.00257 * 1 2 3 28 28 H 1.08997 * 109.47160 * 59.99887 * 1 2 3 29 29 H 1.08997 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47179 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46852 * 299.99692 * 3 2 1 32 32 H 1.08993 * 109.47248 * 59.99847 * 3 2 1 33 33 H 1.09000 * 109.47530 * 180.02562 * 4 2 1 34 34 H 1.09009 * 109.47028 * 299.99900 * 4 2 1 35 35 H 0.96999 * 119.99968 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47494 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.47539 * 59.99768 * 13 2 1 38 38 H 1.00908 * 110.99733 * 56.04845 * 14 13 2 39 39 H 1.08998 * 109.47347 * 60.00591 * 15 14 13 40 40 H 1.08990 * 109.47472 * 300.00105 * 15 14 13 41 41 H 1.08007 * 128.06072 * 359.94175 * 17 16 15 42 42 H 1.08000 * 120.07565 * 0.02562 * 20 19 18 43 43 H 1.08004 * 119.93003 * 180.02562 * 21 20 19 44 44 H 1.08006 * 119.85810 * 179.74266 * 22 21 20 45 45 H 1.07993 * 119.93553 * 179.97438 * 23 22 21 46 46 H 1.08003 * 120.07678 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8703 -0.4824 -3.7319 8 7 2.6256 -1.5522 -3.8526 9 14 1.2482 0.3985 -5.2572 10 1 0.4246 1.5663 -4.8531 11 1 2.4034 0.8644 -6.0657 12 1 0.4224 -0.5344 -6.0653 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0286 2.4487 15 6 2.0209 -0.6951 3.6703 16 6 1.4994 0.0416 4.8771 17 6 0.3338 -0.2611 5.6105 18 6 0.3079 0.6905 6.5934 19 6 -0.7102 0.8440 7.6544 20 6 -0.5964 1.8723 8.5912 21 6 -1.5495 2.0098 9.5792 22 6 -2.6166 1.1314 9.6422 23 6 -2.7352 0.1099 8.7167 24 6 -1.7885 -0.0393 7.7243 25 8 1.3917 1.4619 6.3957 26 7 2.0376 1.0822 5.4470 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2492 35 1 2.8593 -1.8840 -4.7336 36 1 3.1300 -0.7209 1.2495 37 1 1.6767 -1.7489 1.2494 38 1 0.5438 0.0414 2.4402 39 1 3.1108 -0.6953 3.6874 40 1 1.6572 -1.7224 3.6870 41 1 -0.3741 -1.0581 5.4366 42 1 0.2359 2.5589 8.5428 43 1 -1.4629 2.8053 10.3045 44 1 -3.3578 1.2407 10.4201 45 1 -3.5703 -0.5728 8.7715 46 1 -1.8824 -0.8368 7.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174333418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:23 Heat of formation + Delta-G solvation = 70.327493 kcal Electronic energy + Delta-G solvation = -24732.854735 eV Core-core repulsion = 21204.014785 eV Total energy + Delta-G solvation = -3528.839951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.01535 -39.48982 -37.80670 -35.45794 -33.72276 -33.04022 -31.96107 -31.39680 -29.78131 -27.50653 -26.59653 -26.31499 -24.53178 -24.08396 -23.33586 -22.29039 -22.09028 -20.33990 -18.36844 -17.77368 -17.69811 -16.65396 -16.28370 -16.06856 -15.34134 -15.24195 -14.80461 -14.48826 -14.16832 -14.05601 -13.84896 -13.62406 -13.37837 -13.19969 -12.78430 -12.62655 -12.32909 -11.99369 -11.76565 -11.70134 -11.55777 -11.26061 -10.98168 -10.87021 -10.75018 -10.58134 -10.49532 -10.38907 -10.22434 -10.10629 -9.68743 -9.44008 -9.02696 -8.83017 -8.68179 -8.31550 -8.18338 -5.95925 -3.95833 0.27729 0.92536 1.69148 2.11274 2.76553 3.32931 3.38879 3.40797 3.44514 3.97799 4.09527 4.43157 4.47710 4.50227 4.57135 4.65742 4.86269 4.90155 4.95687 5.09716 5.21631 5.37208 5.40021 5.51289 5.52282 5.56353 5.70225 5.76968 5.83924 5.97035 5.97453 6.01308 6.02646 6.21242 6.31664 6.43712 6.49623 6.67298 6.77938 6.84010 7.15519 7.20717 7.26947 7.34706 7.58302 7.70854 7.85434 8.04464 8.14011 8.48910 9.09673 9.66952 11.15752 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027987 B = 0.002058 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.209388 B =13601.950273 C =13919.031026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.117 4.117 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.070 3.930 14 N -0.680 5.680 15 C 0.133 3.867 16 C 0.030 3.970 17 C -0.211 4.211 18 C 0.002 3.998 19 C -0.019 4.019 20 C -0.095 4.095 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.118 4.118 24 C -0.091 4.091 25 O 0.109 5.891 26 N -0.341 5.341 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.258 0.742 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.341 0.659 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.172 0.828 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.714 2.450 28.360 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.313 5.313 15 C 0.004 3.996 16 C -0.129 4.129 17 C -0.232 4.232 18 C -0.061 4.061 19 C -0.020 4.020 20 C -0.114 4.114 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.110 4.110 25 O 0.038 5.962 26 N -0.042 5.042 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.160 0.840 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.189 0.811 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.986 3.511 27.948 29.278 hybrid contribution -1.429 -1.030 -1.012 2.032 sum -9.415 2.481 26.936 28.642 Atomic orbital electron populations 1.21776 0.96072 1.00367 1.00462 1.20630 0.94744 0.96182 0.94254 1.21608 0.99860 0.95762 1.00199 1.19130 0.96171 0.94970 0.90121 1.21273 1.30709 1.11853 0.90580 0.92226 1.25026 0.95437 0.95145 0.99092 1.69975 1.37378 1.23201 1.23176 0.86599 0.78604 0.79717 0.83460 1.19775 1.21160 1.21202 1.22159 1.00036 0.94719 0.88869 1.60550 1.16618 1.53665 1.00472 1.20213 1.00954 0.93489 0.84990 1.23391 0.94434 0.95275 0.99759 1.22598 1.00688 1.03099 0.96856 1.22468 0.91514 0.93645 0.98490 1.17644 0.92966 0.97810 0.93554 1.21341 0.99337 0.96869 0.93833 1.21133 0.94402 0.99604 0.98477 1.21347 0.97913 0.94797 0.98712 1.21093 0.98989 0.98576 0.94918 1.21136 0.92959 0.98278 0.98625 1.84938 1.28412 1.45466 1.37337 1.73859 1.17338 1.13883 0.99141 0.94902 0.91616 0.94031 0.94097 0.92632 0.93942 0.96614 0.96863 0.93229 0.91255 0.95495 0.84012 0.89273 0.93028 0.81066 0.84977 0.85330 0.85604 0.85238 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.35 8.06 37.16 0.30 -2.05 16 4 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16 5 C -0.51 -13.90 7.65 -34.44 -0.26 -14.16 16 6 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.07 1.21 4.65 -3.82 -0.02 1.19 16 14 N -0.68 -10.23 5.70 -115.06 -0.66 -10.89 16 15 C 0.13 1.73 6.27 -4.98 -0.03 1.70 16 16 C 0.03 0.39 6.82 -82.20 -0.56 -0.17 16 17 C -0.21 -2.22 10.48 -39.04 -0.41 -2.63 16 18 C 0.00 0.02 7.16 -36.16 -0.26 -0.24 16 19 C -0.02 -0.16 5.87 -104.98 -0.62 -0.78 16 20 C -0.10 -0.73 9.74 -39.19 -0.38 -1.11 16 21 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 22 C -0.11 -0.61 10.04 -39.50 -0.40 -1.00 16 23 C -0.12 -0.69 10.03 -39.64 -0.40 -1.09 16 24 C -0.09 -0.65 9.59 -39.19 -0.38 -1.03 16 25 O 0.11 1.39 11.04 15.97 0.18 1.56 16 26 N -0.34 -4.96 12.05 33.51 0.40 -4.56 16 27 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 28 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.05 1.18 6.62 -51.93 -0.34 0.84 16 32 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.34 4.91 6.76 -39.29 -0.27 4.65 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.17 1.32 7.47 -52.48 -0.39 0.93 16 42 H 0.13 0.91 7.96 -52.49 -0.42 0.49 16 43 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 44 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 45 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 46 H 0.13 0.73 7.16 -52.48 -0.38 0.36 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -31.46 377.39 -9.45 -40.91 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.96 Total: 0.46 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -3.82 Total: -23.71 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.48 Total: -41.61 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.18 Total: 1.56 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.46 -9.45 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174333418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.238 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds