Wall clock time and date at job start Tue Mar 31 2020 10:55:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53000 * 109.47328 * 2 1
4 4 C 1.52997 * 109.47218 * 239.99905 * 2 1 3
5 5 C 1.50694 * 109.47238 * 59.99771 * 4 2 1
6 6 H 1.07999 * 120.00276 * 0.02562 * 5 4 2
7 7 C 1.37882 * 120.00080 * 180.02562 * 5 4 2
8 8 N 1.31512 * 120.00094 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00092 * 180.02562 * 7 5 4
10 10 H 1.48504 * 109.47170 * 0.02562 * 9 7 5
11 11 H 1.48497 * 109.47537 * 119.99834 * 9 7 5
12 12 H 1.48504 * 109.46904 * 240.00316 * 9 7 5
13 13 C 1.53001 * 109.47261 * 119.99912 * 2 1 3
14 14 N 1.46905 * 109.47053 * 299.99711 * 13 2 1
15 15 C 1.46899 * 110.99911 * 179.97438 * 14 13 2
16 16 C 1.50699 * 109.47029 * 180.02562 * 15 14 13
17 17 C 1.41003 * 126.70263 * 95.00200 * 16 15 14
18 18 C 1.36831 * 103.88282 * 179.97438 * 17 16 15
19 19 C 1.47844 * 126.92395 * 179.97438 * 18 17 16
20 20 C 1.39567 * 120.13817 * 179.97438 * 19 18 17
21 21 C 1.37963 * 119.85204 * 180.02562 * 20 19 18
22 22 C 1.38355 * 120.14529 * 359.97438 * 21 20 19
23 23 C 1.38355 * 120.29228 * 0.02562 * 22 21 20
24 24 C 1.37966 * 120.14247 * 0.02562 * 23 22 21
25 25 O 1.34491 * 106.14680 * 0.26326 * 18 17 16
26 26 N 1.20895 * 111.45277 * 359.52731 * 25 18 17
27 27 H 1.09003 * 109.47093 * 300.00257 * 1 2 3
28 28 H 1.08997 * 109.47160 * 59.99887 * 1 2 3
29 29 H 1.08997 * 109.47033 * 180.02562 * 1 2 3
30 30 H 1.09007 * 109.47179 * 180.02562 * 3 2 1
31 31 H 1.09000 * 109.46852 * 299.99692 * 3 2 1
32 32 H 1.08993 * 109.47248 * 59.99847 * 3 2 1
33 33 H 1.09000 * 109.47530 * 180.02562 * 4 2 1
34 34 H 1.09009 * 109.47028 * 299.99900 * 4 2 1
35 35 H 0.96999 * 119.99968 * 179.97438 * 8 7 5
36 36 H 1.09004 * 109.47494 * 180.02562 * 13 2 1
37 37 H 1.08997 * 109.47539 * 59.99768 * 13 2 1
38 38 H 1.00908 * 110.99733 * 56.04845 * 14 13 2
39 39 H 1.08998 * 109.47347 * 60.00591 * 15 14 13
40 40 H 1.08990 * 109.47472 * 300.00105 * 15 14 13
41 41 H 1.08007 * 128.06072 * 359.94175 * 17 16 15
42 42 H 1.08000 * 120.07565 * 0.02562 * 20 19 18
43 43 H 1.08004 * 119.93003 * 180.02562 * 21 20 19
44 44 H 1.08006 * 119.85810 * 179.74266 * 22 21 20
45 45 H 1.07993 * 119.93553 * 179.97438 * 23 22 21
46 46 H 1.08003 * 120.07678 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 1.5377 -0.0109 -2.4796
6 1 0.9170 0.8674 -2.3806
7 6 1.8703 -0.4824 -3.7319
8 7 2.6256 -1.5522 -3.8526
9 14 1.2482 0.3985 -5.2572
10 1 0.4246 1.5663 -4.8531
11 1 2.4034 0.8644 -6.0657
12 1 0.4224 -0.5344 -6.0653
13 6 2.0400 -0.7212 1.2492
14 7 1.5504 -0.0286 2.4487
15 6 2.0209 -0.6951 3.6703
16 6 1.4994 0.0416 4.8771
17 6 0.3338 -0.2611 5.6105
18 6 0.3079 0.6905 6.5934
19 6 -0.7102 0.8440 7.6544
20 6 -0.5964 1.8723 8.5912
21 6 -1.5495 2.0098 9.5792
22 6 -2.6166 1.1314 9.6422
23 6 -2.7352 0.1099 8.7167
24 6 -1.7885 -0.0393 7.7243
25 8 1.3917 1.4619 6.3957
26 7 2.0376 1.0822 5.4470
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0276 0.0005
30 1 3.1301 1.4425 -0.0005
31 1 1.6767 1.9563 -0.8900
32 1 1.6767 1.9563 0.8899
33 1 3.1300 -0.7217 -1.2490
34 1 1.6766 -1.7490 -1.2492
35 1 2.8593 -1.8840 -4.7336
36 1 3.1300 -0.7209 1.2495
37 1 1.6767 -1.7489 1.2494
38 1 0.5438 0.0414 2.4402
39 1 3.1108 -0.6953 3.6874
40 1 1.6572 -1.7224 3.6870
41 1 -0.3741 -1.0581 5.4366
42 1 0.2359 2.5589 8.5428
43 1 -1.4629 2.8053 10.3045
44 1 -3.3578 1.2407 10.4201
45 1 -3.5703 -0.5728 8.7715
46 1 -1.8824 -0.8368 7.0021
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000174333418.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:55:22
Heat of formation + Delta-G solvation = 53.415212 kcal
Electronic energy + Delta-G solvation = -24733.588107 eV
Core-core repulsion = 21204.014785 eV
Total energy + Delta-G solvation = -3529.573322 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-45.93111 -39.97339 -39.30215 -36.70916 -34.85545 -34.25718 -33.53146 -31.88296
-30.45437 -29.25792 -28.06484 -27.92014 -26.08453 -24.78618 -24.23514 -23.70357
-22.85968 -21.16216 -19.60345 -18.88152 -18.66118 -18.33736 -17.30002 -16.97888
-16.61650 -16.22316 -15.88385 -15.73865 -15.55926 -14.89988 -14.82556 -14.43514
-14.29492 -14.25272 -14.11822 -13.89243 -13.88175 -13.45770 -13.23515 -12.82086
-12.68972 -12.54141 -12.33640 -12.25910 -12.18132 -12.14739 -11.92428 -11.90239
-11.40941 -11.31702 -11.23230 -10.87665 -10.74966 -10.51185 -9.90857 -9.39317
-9.32786 -8.14412 -6.20976 -0.35373 0.45976 0.88610 1.31174 1.39538
1.40923 1.52899 1.99998 2.43391 2.88984 3.02950 3.19513 3.27304
3.48831 3.90437 4.03689 4.05494 4.09598 4.15824 4.22339 4.27383
4.31963 4.37625 4.51204 4.56699 4.60113 4.72968 4.74930 4.80775
4.91949 4.93164 5.03462 5.05417 5.12056 5.18526 5.19378 5.48055
5.50447 5.50849 5.52761 5.56540 5.57874 5.62313 5.85399 5.91497
5.96047 5.99600 6.36082 6.41192 6.94056 7.25048 7.46088 8.97966
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.027987 B = 0.002058 C = 0.002011
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1000.209388 B =13601.950273 C =13919.031026
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.055 4.055
3 C -0.108 4.108
4 C 0.040 3.960
5 C -0.513 4.513
6 H 0.065 0.935
7 C -0.005 4.005
8 N -0.936 5.936
9 Si 0.956 3.044
10 H -0.262 1.262
11 H -0.284 1.284
12 H -0.281 1.281
13 C 0.084 3.916
14 N -0.683 5.683
15 C 0.136 3.864
16 C 0.021 3.979
17 C -0.211 4.211
18 C 0.008 3.992
19 C -0.045 4.045
20 C -0.109 4.109
21 C -0.124 4.124
22 C -0.106 4.106
23 C -0.122 4.122
24 C -0.096 4.096
25 O 0.097 5.903
26 N -0.378 5.378
27 H 0.063 0.937
28 H 0.046 0.954
29 H 0.043 0.957
30 H 0.029 0.971
31 H 0.039 0.961
32 H 0.060 0.940
33 H -0.016 1.016
34 H -0.011 1.011
35 H 0.260 0.740
36 H 0.058 0.942
37 H 0.032 0.968
38 H 0.347 0.653
39 H 0.080 0.920
40 H 0.075 0.925
41 H 0.200 0.800
42 H 0.130 0.870
43 H 0.149 0.851
44 H 0.152 0.848
45 H 0.154 0.846
46 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.273 2.777 30.048 32.576
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.055 4.055
3 C -0.165 4.165
4 C 0.003 3.997
5 C -0.551 4.551
6 H 0.083 0.917
7 C -0.202 4.202
8 N -0.578 5.578
9 Si 0.782 3.218
10 H -0.186 1.186
11 H -0.210 1.210
12 H -0.207 1.207
13 C -0.045 4.045
14 N -0.317 5.317
15 C 0.007 3.993
16 C -0.137 4.137
17 C -0.233 4.233
18 C -0.056 4.056
19 C -0.046 4.046
20 C -0.128 4.128
21 C -0.141 4.141
22 C -0.124 4.124
23 C -0.139 4.139
24 C -0.114 4.114
25 O 0.028 5.972
26 N -0.081 5.081
27 H 0.082 0.918
28 H 0.065 0.935
29 H 0.062 0.938
30 H 0.048 0.952
31 H 0.058 0.942
32 H 0.079 0.921
33 H 0.003 0.997
34 H 0.008 0.992
35 H 0.068 0.932
36 H 0.077 0.923
37 H 0.050 0.950
38 H 0.167 0.833
39 H 0.099 0.901
40 H 0.093 0.907
41 H 0.217 0.783
42 H 0.148 0.852
43 H 0.166 0.834
44 H 0.170 0.830
45 H 0.172 0.828
46 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -10.560 3.854 29.661 31.720
hybrid contribution -0.682 -1.126 -1.388 1.913
sum -11.242 2.728 28.273 30.548
Atomic orbital electron populations
1.21680 0.94492 1.00742 1.01023 1.20490 0.95966 0.95758 0.93283
1.21511 0.99108 0.95701 1.00222 1.19003 0.94108 0.94186 0.92436
1.21642 1.30181 1.11827 0.91484 0.91734 1.25920 0.95776 0.95959
1.02562 1.70108 1.38862 1.24858 1.23961 0.85522 0.78088 0.78798
0.79399 1.18604 1.20974 1.20660 1.21849 0.99333 0.94708 0.88641
1.60420 1.17045 1.53870 1.00341 1.20201 1.00560 0.94516 0.84025
1.23498 0.95276 0.95113 0.99823 1.22879 1.00372 1.03784 0.96223
1.22932 0.90928 0.92948 0.98760 1.17794 0.93520 0.99371 0.93924
1.21490 0.99991 0.96886 0.94400 1.21421 0.94092 1.00318 0.98306
1.21744 0.97868 0.93945 0.98871 1.21446 0.99228 0.98965 0.94304
1.21382 0.92555 0.98171 0.99291 1.84887 1.29172 1.45994 1.37108
1.73847 1.18766 1.15217 1.00316 0.91837 0.93470 0.93763 0.95183
0.94170 0.92130 0.99731 0.99220 0.93167 0.92316 0.94965 0.83310
0.90121 0.90680 0.78269 0.85226 0.83367 0.83028 0.82846 0.83942
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16
2 C -0.05 -2.18 0.60 -52.18 -0.03 -2.22 16
3 C -0.11 -4.32 8.06 71.98 0.58 -3.74 16
4 C 0.04 2.09 4.04 29.84 0.12 2.21 16
5 C -0.51 -28.57 7.65 25.60 0.20 -28.38 16
6 H 0.06 3.47 5.68 -2.91 -0.02 3.45 16
7 C -0.01 -0.32 5.46 84.66 0.46 0.15 16
8 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16
9 Si 0.96 44.83 29.54 68.60 2.03 46.86 16
10 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16
11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16
12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
13 C 0.08 2.83 4.65 86.30 0.40 3.24 16
14 N -0.68 -19.61 5.70 -517.94 -2.95 -22.57 16
15 C 0.14 3.37 6.27 85.56 0.54 3.91 16
16 C 0.02 0.52 6.82 43.47 0.30 0.82 16
17 C -0.21 -4.12 10.48 22.62 0.24 -3.89 16
18 C 0.01 0.16 7.16 24.48 0.18 0.33 16
19 C -0.04 -0.74 5.87 -20.09 -0.12 -0.86 16
20 C -0.11 -1.59 9.74 22.53 0.22 -1.37 16
21 C -0.12 -1.25 10.03 22.23 0.22 -1.03 16
22 C -0.11 -0.86 10.04 22.33 0.22 -0.64 16
23 C -0.12 -1.06 10.03 22.23 0.22 -0.84 16
24 C -0.10 -1.15 9.59 22.53 0.22 -0.94 16
25 O 0.10 2.50 11.04 67.32 0.74 3.24 16
26 N -0.38 -11.05 12.05 -48.85 -0.59 -11.63 16
27 H 0.06 1.88 6.57 -2.39 -0.02 1.87 16
28 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16
29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
30 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16
31 H 0.04 1.69 6.62 -2.39 -0.02 1.68 16
32 H 0.06 2.18 7.60 -2.39 -0.02 2.16 16
33 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16
34 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16
35 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16
36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
38 H 0.35 9.20 6.76 -89.69 -0.61 8.59 16
39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
41 H 0.20 2.52 7.47 -2.91 -0.02 2.50 16
42 H 0.13 1.82 7.96 -2.91 -0.02 1.79 16
43 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16
44 H 0.15 0.41 8.06 -2.91 -0.02 0.39 16
45 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16
46 H 0.14 1.23 7.16 -2.91 -0.02 1.21 16
Total: -1.00 -69.24 377.39 4.41 -64.83
By element:
Atomic # 1 Polarization: 13.04 SS G_CDS: 0.37 Total: 13.41 kcal
Atomic # 6 Polarization: -41.59 SS G_CDS: 4.53 Total: -37.06 kcal
Atomic # 7 Polarization: -88.02 SS G_CDS: -3.26 Total: -91.27 kcal
Atomic # 8 Polarization: 2.50 SS G_CDS: 0.74 Total: 3.24 kcal
Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal
Total: -69.24 4.41 -64.83 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000174333418.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.243 kcal
(2) G-P(sol) polarization free energy of solvation -69.240 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.003 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.415 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds