Wall clock time and date at job start Tue Mar 31 2020 10:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 C 1.52997 * 109.47218 * 239.99905 * 2 1 3 5 5 C 1.50694 * 109.47238 * 59.99771 * 4 2 1 6 6 H 1.07999 * 120.00276 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00094 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00092 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47537 * 119.99834 * 9 7 5 12 12 H 1.48504 * 109.46904 * 240.00316 * 9 7 5 13 13 C 1.53001 * 109.47261 * 119.99912 * 2 1 3 14 14 N 1.46905 * 109.47053 * 299.99711 * 13 2 1 15 15 C 1.46899 * 110.99911 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.47029 * 180.02562 * 15 14 13 17 17 C 1.41003 * 126.70263 * 95.00200 * 16 15 14 18 18 C 1.36831 * 103.88282 * 179.97438 * 17 16 15 19 19 C 1.47844 * 126.92395 * 179.97438 * 18 17 16 20 20 C 1.39567 * 120.13817 * 179.97438 * 19 18 17 21 21 C 1.37963 * 119.85204 * 180.02562 * 20 19 18 22 22 C 1.38355 * 120.14529 * 359.97438 * 21 20 19 23 23 C 1.38355 * 120.29228 * 0.02562 * 22 21 20 24 24 C 1.37966 * 120.14247 * 0.02562 * 23 22 21 25 25 O 1.34491 * 106.14680 * 0.26326 * 18 17 16 26 26 N 1.20895 * 111.45277 * 359.52731 * 25 18 17 27 27 H 1.09003 * 109.47093 * 300.00257 * 1 2 3 28 28 H 1.08997 * 109.47160 * 59.99887 * 1 2 3 29 29 H 1.08997 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47179 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46852 * 299.99692 * 3 2 1 32 32 H 1.08993 * 109.47248 * 59.99847 * 3 2 1 33 33 H 1.09000 * 109.47530 * 180.02562 * 4 2 1 34 34 H 1.09009 * 109.47028 * 299.99900 * 4 2 1 35 35 H 0.96999 * 119.99968 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47494 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.47539 * 59.99768 * 13 2 1 38 38 H 1.00908 * 110.99733 * 56.04845 * 14 13 2 39 39 H 1.08998 * 109.47347 * 60.00591 * 15 14 13 40 40 H 1.08990 * 109.47472 * 300.00105 * 15 14 13 41 41 H 1.08007 * 128.06072 * 359.94175 * 17 16 15 42 42 H 1.08000 * 120.07565 * 0.02562 * 20 19 18 43 43 H 1.08004 * 119.93003 * 180.02562 * 21 20 19 44 44 H 1.08006 * 119.85810 * 179.74266 * 22 21 20 45 45 H 1.07993 * 119.93553 * 179.97438 * 23 22 21 46 46 H 1.08003 * 120.07678 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8703 -0.4824 -3.7319 8 7 2.6256 -1.5522 -3.8526 9 14 1.2482 0.3985 -5.2572 10 1 0.4246 1.5663 -4.8531 11 1 2.4034 0.8644 -6.0657 12 1 0.4224 -0.5344 -6.0653 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0286 2.4487 15 6 2.0209 -0.6951 3.6703 16 6 1.4994 0.0416 4.8771 17 6 0.3338 -0.2611 5.6105 18 6 0.3079 0.6905 6.5934 19 6 -0.7102 0.8440 7.6544 20 6 -0.5964 1.8723 8.5912 21 6 -1.5495 2.0098 9.5792 22 6 -2.6166 1.1314 9.6422 23 6 -2.7352 0.1099 8.7167 24 6 -1.7885 -0.0393 7.7243 25 8 1.3917 1.4619 6.3957 26 7 2.0376 1.0822 5.4470 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2492 35 1 2.8593 -1.8840 -4.7336 36 1 3.1300 -0.7209 1.2495 37 1 1.6767 -1.7489 1.2494 38 1 0.5438 0.0414 2.4402 39 1 3.1108 -0.6953 3.6874 40 1 1.6572 -1.7224 3.6870 41 1 -0.3741 -1.0581 5.4366 42 1 0.2359 2.5589 8.5428 43 1 -1.4629 2.8053 10.3045 44 1 -3.3578 1.2407 10.4201 45 1 -3.5703 -0.5728 8.7715 46 1 -1.8824 -0.8368 7.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174333418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:22 Heat of formation + Delta-G solvation = 53.415212 kcal Electronic energy + Delta-G solvation = -24733.588107 eV Core-core repulsion = 21204.014785 eV Total energy + Delta-G solvation = -3529.573322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.93111 -39.97339 -39.30215 -36.70916 -34.85545 -34.25718 -33.53146 -31.88296 -30.45437 -29.25792 -28.06484 -27.92014 -26.08453 -24.78618 -24.23514 -23.70357 -22.85968 -21.16216 -19.60345 -18.88152 -18.66118 -18.33736 -17.30002 -16.97888 -16.61650 -16.22316 -15.88385 -15.73865 -15.55926 -14.89988 -14.82556 -14.43514 -14.29492 -14.25272 -14.11822 -13.89243 -13.88175 -13.45770 -13.23515 -12.82086 -12.68972 -12.54141 -12.33640 -12.25910 -12.18132 -12.14739 -11.92428 -11.90239 -11.40941 -11.31702 -11.23230 -10.87665 -10.74966 -10.51185 -9.90857 -9.39317 -9.32786 -8.14412 -6.20976 -0.35373 0.45976 0.88610 1.31174 1.39538 1.40923 1.52899 1.99998 2.43391 2.88984 3.02950 3.19513 3.27304 3.48831 3.90437 4.03689 4.05494 4.09598 4.15824 4.22339 4.27383 4.31963 4.37625 4.51204 4.56699 4.60113 4.72968 4.74930 4.80775 4.91949 4.93164 5.03462 5.05417 5.12056 5.18526 5.19378 5.48055 5.50447 5.50849 5.52761 5.56540 5.57874 5.62313 5.85399 5.91497 5.96047 5.99600 6.36082 6.41192 6.94056 7.25048 7.46088 8.97966 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027987 B = 0.002058 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.209388 B =13601.950273 C =13919.031026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.055 4.055 3 C -0.108 4.108 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.065 0.935 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.956 3.044 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.281 1.281 13 C 0.084 3.916 14 N -0.683 5.683 15 C 0.136 3.864 16 C 0.021 3.979 17 C -0.211 4.211 18 C 0.008 3.992 19 C -0.045 4.045 20 C -0.109 4.109 21 C -0.124 4.124 22 C -0.106 4.106 23 C -0.122 4.122 24 C -0.096 4.096 25 O 0.097 5.903 26 N -0.378 5.378 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.060 0.940 33 H -0.016 1.016 34 H -0.011 1.011 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.032 0.968 38 H 0.347 0.653 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.200 0.800 42 H 0.130 0.870 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 2.777 30.048 32.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.055 4.055 3 C -0.165 4.165 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.782 3.218 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.207 1.207 13 C -0.045 4.045 14 N -0.317 5.317 15 C 0.007 3.993 16 C -0.137 4.137 17 C -0.233 4.233 18 C -0.056 4.056 19 C -0.046 4.046 20 C -0.128 4.128 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.114 4.114 25 O 0.028 5.972 26 N -0.081 5.081 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.003 0.997 34 H 0.008 0.992 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.167 0.833 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.217 0.783 42 H 0.148 0.852 43 H 0.166 0.834 44 H 0.170 0.830 45 H 0.172 0.828 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.560 3.854 29.661 31.720 hybrid contribution -0.682 -1.126 -1.388 1.913 sum -11.242 2.728 28.273 30.548 Atomic orbital electron populations 1.21680 0.94492 1.00742 1.01023 1.20490 0.95966 0.95758 0.93283 1.21511 0.99108 0.95701 1.00222 1.19003 0.94108 0.94186 0.92436 1.21642 1.30181 1.11827 0.91484 0.91734 1.25920 0.95776 0.95959 1.02562 1.70108 1.38862 1.24858 1.23961 0.85522 0.78088 0.78798 0.79399 1.18604 1.20974 1.20660 1.21849 0.99333 0.94708 0.88641 1.60420 1.17045 1.53870 1.00341 1.20201 1.00560 0.94516 0.84025 1.23498 0.95276 0.95113 0.99823 1.22879 1.00372 1.03784 0.96223 1.22932 0.90928 0.92948 0.98760 1.17794 0.93520 0.99371 0.93924 1.21490 0.99991 0.96886 0.94400 1.21421 0.94092 1.00318 0.98306 1.21744 0.97868 0.93945 0.98871 1.21446 0.99228 0.98965 0.94304 1.21382 0.92555 0.98171 0.99291 1.84887 1.29172 1.45994 1.37108 1.73847 1.18766 1.15217 1.00316 0.91837 0.93470 0.93763 0.95183 0.94170 0.92130 0.99731 0.99220 0.93167 0.92316 0.94965 0.83310 0.90121 0.90680 0.78269 0.85226 0.83367 0.83028 0.82846 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 2 C -0.05 -2.18 0.60 -52.18 -0.03 -2.22 16 3 C -0.11 -4.32 8.06 71.98 0.58 -3.74 16 4 C 0.04 2.09 4.04 29.84 0.12 2.21 16 5 C -0.51 -28.57 7.65 25.60 0.20 -28.38 16 6 H 0.06 3.47 5.68 -2.91 -0.02 3.45 16 7 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 8 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.08 2.83 4.65 86.30 0.40 3.24 16 14 N -0.68 -19.61 5.70 -517.94 -2.95 -22.57 16 15 C 0.14 3.37 6.27 85.56 0.54 3.91 16 16 C 0.02 0.52 6.82 43.47 0.30 0.82 16 17 C -0.21 -4.12 10.48 22.62 0.24 -3.89 16 18 C 0.01 0.16 7.16 24.48 0.18 0.33 16 19 C -0.04 -0.74 5.87 -20.09 -0.12 -0.86 16 20 C -0.11 -1.59 9.74 22.53 0.22 -1.37 16 21 C -0.12 -1.25 10.03 22.23 0.22 -1.03 16 22 C -0.11 -0.86 10.04 22.33 0.22 -0.64 16 23 C -0.12 -1.06 10.03 22.23 0.22 -0.84 16 24 C -0.10 -1.15 9.59 22.53 0.22 -0.94 16 25 O 0.10 2.50 11.04 67.32 0.74 3.24 16 26 N -0.38 -11.05 12.05 -48.85 -0.59 -11.63 16 27 H 0.06 1.88 6.57 -2.39 -0.02 1.87 16 28 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.04 1.69 6.62 -2.39 -0.02 1.68 16 32 H 0.06 2.18 7.60 -2.39 -0.02 2.16 16 33 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 35 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.35 9.20 6.76 -89.69 -0.61 8.59 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.20 2.52 7.47 -2.91 -0.02 2.50 16 42 H 0.13 1.82 7.96 -2.91 -0.02 1.79 16 43 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 44 H 0.15 0.41 8.06 -2.91 -0.02 0.39 16 45 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 46 H 0.14 1.23 7.16 -2.91 -0.02 1.21 16 Total: -1.00 -69.24 377.39 4.41 -64.83 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.37 Total: 13.41 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 4.53 Total: -37.06 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -3.26 Total: -91.27 kcal Atomic # 8 Polarization: 2.50 SS G_CDS: 0.74 Total: 3.24 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -69.24 4.41 -64.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174333418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.243 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds