Wall clock time and date at job start Tue Mar 31 2020 11:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46970 * 2 1 4 4 C 1.52993 * 109.47385 * 120.00199 * 2 1 3 5 5 C 1.53002 * 109.47182 * 175.00178 * 4 2 1 6 6 N 1.46499 * 109.47406 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99505 * 270.00012 * 6 5 4 8 8 C 1.50697 * 109.47109 * 283.37252 * 7 6 5 9 9 H 1.07997 * 120.00195 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00239 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99652 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00273 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47075 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47315 * 119.99813 * 12 10 8 15 15 H 1.48498 * 109.47105 * 239.99923 * 12 10 8 16 16 C 1.34771 * 120.00548 * 89.99748 * 6 5 4 17 17 O 1.21618 * 119.99916 * 6.75045 * 16 6 5 18 18 C 1.47380 * 120.00376 * 186.75845 * 16 6 5 19 19 C 1.39318 * 120.34253 * 326.07149 * 18 16 6 20 20 C 1.38267 * 120.19609 * 179.97438 * 19 18 16 21 21 C 1.38062 * 120.88874 * 359.59123 * 20 19 18 22 22 C 1.38974 * 120.26733 * 0.64135 * 21 20 19 23 23 N 1.37798 * 133.37884 * 179.20600 * 22 21 20 24 24 H 0.96997 * 125.07631 * 0.03882 * 23 22 21 25 25 C 1.36554 * 109.85114 * 180.02562 * 23 22 21 26 26 C 1.34552 * 109.89932 * 0.02562 * 25 23 22 27 27 C 1.40671 * 119.51277 * 359.54363 * 22 21 20 28 28 H 1.09005 * 109.47102 * 299.99487 * 1 2 3 29 29 H 1.08996 * 109.47324 * 59.99905 * 1 2 3 30 30 H 1.09008 * 109.46698 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47102 * 240.00513 * 2 1 3 32 32 H 1.09003 * 109.47275 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47613 * 300.00428 * 3 2 1 34 34 H 1.08999 * 109.47133 * 60.00618 * 3 2 1 35 35 H 1.09002 * 109.47323 * 55.00607 * 4 2 1 36 36 H 1.08999 * 109.47396 * 295.00038 * 4 2 1 37 37 H 1.08999 * 109.47306 * 59.99719 * 5 4 2 38 38 H 1.09006 * 109.46800 * 299.99790 * 5 4 2 39 39 H 1.08997 * 109.47613 * 43.37647 * 7 6 5 40 40 H 1.09005 * 109.46939 * 163.37648 * 7 6 5 41 41 H 0.97001 * 120.00067 * 179.97438 * 11 10 8 42 42 H 1.08007 * 119.89779 * 0.02562 * 19 18 16 43 43 H 1.08006 * 119.55590 * 180.02562 * 20 19 18 44 44 H 1.08002 * 119.86520 * 179.90715 * 21 20 19 45 45 H 1.07995 * 125.05007 * 180.02562 * 25 23 22 46 46 H 1.07993 * 126.49423 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5221 2.3836 7 6 4.4016 -0.7549 3.5821 8 6 5.7379 -0.0880 3.3808 9 1 6.2739 -0.2219 2.4528 10 6 6.2764 0.6931 4.3813 11 7 5.6239 0.8557 5.5115 12 14 7.9324 1.5203 4.1315 13 1 8.4570 1.1811 2.7842 14 1 7.7727 2.9923 4.2447 15 1 8.8846 1.0446 5.1670 16 6 4.1820 -2.8637 2.3813 17 8 4.0115 -3.4892 1.3523 18 6 4.5294 -3.5729 3.6257 19 6 5.3729 -2.9792 4.5622 20 6 5.6963 -3.6470 5.7288 21 6 5.1868 -4.9031 5.9911 22 6 4.3467 -5.5236 5.0743 23 7 3.7109 -6.7459 5.0496 24 1 3.7674 -7.4178 5.7468 25 6 2.9891 -6.8699 3.8970 26 6 3.1267 -5.7601 3.1488 27 6 4.0113 -4.8585 3.8810 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6055 -1.7199 1.2950 36 1 1.7517 -0.1584 2.1369 37 1 3.9995 0.1676 1.1419 38 1 3.8532 -1.3939 0.3000 39 1 3.6402 0.0040 3.7618 40 1 4.4558 -1.4255 4.4398 41 1 6.0029 1.4049 6.2156 42 1 5.7747 -1.9939 4.3765 43 1 6.3509 -3.1769 6.4479 44 1 5.4516 -5.4104 6.9070 45 1 2.3960 -7.7308 3.6262 46 1 2.6725 -5.5735 2.1870 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176224794.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:33 Heat of formation + Delta-G solvation = 25.093689 kcal Electronic energy + Delta-G solvation = -26607.472848 eV Core-core repulsion = 23076.671413 eV Total energy + Delta-G solvation = -3530.801435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91418 -39.06505 -36.60064 -36.13042 -34.66344 -32.58645 -31.61156 -29.85526 -28.58449 -28.18824 -27.10598 -26.86058 -23.83201 -23.17884 -22.08821 -21.27306 -20.48026 -19.66458 -18.94332 -17.16436 -16.53374 -16.48606 -15.37589 -15.24555 -14.96905 -14.75412 -14.35303 -14.26815 -13.93293 -13.77997 -13.53666 -13.10456 -12.75112 -12.56565 -12.37363 -12.32008 -12.21376 -11.99656 -11.89092 -11.55066 -11.11493 -11.10233 -10.96949 -10.90462 -10.79019 -10.61638 -10.41136 -10.21936 -10.04705 -9.86917 -9.61208 -9.30867 -8.89543 -8.57412 -7.74267 -7.60220 -7.25003 -6.21735 -4.30089 1.27203 2.09774 3.03133 3.20424 3.29730 3.34447 3.37540 3.62540 4.00956 4.30500 4.54179 5.07655 5.09722 5.10818 5.15196 5.22677 5.23668 5.45205 5.58853 5.74277 5.76052 5.80274 5.86538 5.93907 5.96578 5.98824 6.07829 6.10382 6.20614 6.29688 6.35697 6.42984 6.46733 6.48167 6.50650 6.72105 6.78935 6.86787 6.97704 7.09013 7.12379 7.19541 7.29313 7.57290 7.65181 7.73902 7.79059 8.02468 8.44790 8.79736 9.12030 9.38054 10.83192 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008241 B = 0.006164 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3396.882915 B = 4541.502189 C = 7397.085777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.588 5.588 7 C 0.206 3.794 8 C -0.539 4.539 9 H 0.064 0.936 10 C 0.068 3.932 11 N -0.884 5.884 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.558 3.442 17 O -0.567 6.567 18 C -0.090 4.090 19 C -0.107 4.107 20 C -0.107 4.107 21 C -0.119 4.119 22 C 0.074 3.926 23 N -0.601 5.601 24 H 0.410 0.590 25 C 0.036 3.964 26 C -0.188 4.188 27 C -0.063 4.063 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.266 0.734 42 H 0.190 0.810 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.166 0.834 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.059 -8.272 -1.320 10.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.166 4.166 5 C -0.003 4.003 6 N -0.317 5.317 7 C 0.086 3.914 8 C -0.577 4.577 9 H 0.082 0.918 10 C -0.136 4.136 11 N -0.521 5.521 12 Si 0.721 3.279 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.348 3.652 17 O -0.449 6.449 18 C -0.094 4.094 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.032 4.032 23 N -0.205 5.205 24 H 0.246 0.754 25 C -0.090 4.090 26 C -0.214 4.214 27 C -0.068 4.068 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.206 0.794 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.183 0.817 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.156 -8.558 -1.603 10.663 hybrid contribution 0.876 0.256 0.473 1.028 sum -5.280 -8.302 -1.130 9.903 Atomic orbital electron populations 1.21821 0.95684 1.01379 1.01283 1.21037 0.95271 0.96392 0.98491 1.21898 1.01720 0.95801 1.01217 1.21984 0.96666 1.00312 0.97595 1.21339 0.92772 0.97854 0.88335 1.48066 1.62415 1.05494 1.15753 1.20290 0.95759 0.92187 0.83121 1.21507 1.04121 1.30106 1.01997 0.91765 1.24960 0.97820 0.95882 0.94954 1.69949 1.38209 1.38663 1.05288 0.86492 0.83565 0.79267 0.78567 1.19538 1.20818 1.20690 1.18159 0.76999 0.82226 0.87848 1.90655 1.53461 1.67340 1.33448 1.19363 1.00858 0.93324 0.95847 1.22768 0.95767 1.01894 0.92086 1.20871 1.00136 0.93531 0.98054 1.20107 0.99365 0.96299 0.98185 1.18094 1.00286 0.87232 0.97581 1.41590 1.43773 1.15491 1.19651 0.75360 1.21751 0.99472 1.00338 0.87430 1.21765 1.04449 0.93789 1.01359 1.18945 0.99883 0.93679 0.94331 0.92818 0.93132 0.92961 0.91378 0.92015 0.93354 0.92619 0.92233 0.91791 0.90021 0.91152 0.95307 0.91053 0.92430 0.79383 0.85396 0.86763 0.81706 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.09 -1.28 2.92 -90.63 -0.26 -1.55 16 3 C -0.15 -1.97 8.95 37.15 0.33 -1.64 16 4 C -0.13 -2.13 5.01 -26.73 -0.13 -2.27 16 5 C 0.12 2.33 5.17 -4.04 -0.02 2.31 16 6 N -0.59 -12.99 2.49 -176.34 -0.44 -13.43 16 7 C 0.21 4.90 4.68 -5.19 -0.02 4.88 16 8 C -0.54 -13.61 7.52 -34.44 -0.26 -13.87 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.07 1.72 5.45 -17.82 -0.10 1.63 16 11 N -0.88 -23.26 13.29 55.43 0.74 -22.53 16 12 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.56 12.74 7.38 -12.54 -0.09 12.65 16 17 O -0.57 -13.67 15.62 5.26 0.08 -13.58 16 18 C -0.09 -1.94 5.53 -104.75 -0.58 -2.52 16 19 C -0.11 -2.24 7.42 -39.17 -0.29 -2.53 16 20 C -0.11 -1.91 9.99 -39.64 -0.40 -2.30 16 21 C -0.12 -1.87 10.05 -39.37 -0.40 -2.27 16 22 C 0.07 1.22 7.27 -83.99 -0.61 0.61 16 23 N -0.60 -7.69 6.06 -10.66 -0.06 -7.76 16 24 H 0.41 3.65 8.96 -40.82 -0.37 3.29 16 25 C 0.04 0.46 11.82 -16.75 -0.20 0.27 16 26 C -0.19 -3.21 10.46 -37.78 -0.40 -3.61 16 27 C -0.06 -1.23 6.11 -104.85 -0.64 -1.87 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.86 6.57 -51.93 -0.34 0.52 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.58 6.38 -51.93 -0.33 1.25 16 38 H 0.07 1.39 7.34 -51.93 -0.38 1.01 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.75 3.85 -52.05 -0.20 1.55 16 41 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 42 H 0.19 4.39 3.82 -52.48 -0.20 4.19 16 43 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 44 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.15 2.54 7.75 -52.49 -0.41 2.13 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -29.71 371.47 -9.68 -39.38 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.84 Total: 10.87 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.72 Total: -13.48 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.23 Total: -43.71 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.71 -9.68 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176224794.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.479 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds