Wall clock time and date at job start Tue Mar 31 2020 11:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46970 * 2 1 4 4 C 1.52993 * 109.47385 * 120.00199 * 2 1 3 5 5 C 1.53002 * 109.47182 * 175.00178 * 4 2 1 6 6 N 1.46499 * 109.47406 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99505 * 270.00012 * 6 5 4 8 8 C 1.50697 * 109.47109 * 283.37252 * 7 6 5 9 9 H 1.07997 * 120.00195 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00239 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99652 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00273 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47075 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47315 * 119.99813 * 12 10 8 15 15 H 1.48498 * 109.47105 * 239.99923 * 12 10 8 16 16 C 1.34771 * 120.00548 * 89.99748 * 6 5 4 17 17 O 1.21618 * 119.99916 * 6.75045 * 16 6 5 18 18 C 1.47380 * 120.00376 * 186.75845 * 16 6 5 19 19 C 1.39318 * 120.34253 * 326.07149 * 18 16 6 20 20 C 1.38267 * 120.19609 * 179.97438 * 19 18 16 21 21 C 1.38062 * 120.88874 * 359.59123 * 20 19 18 22 22 C 1.38974 * 120.26733 * 0.64135 * 21 20 19 23 23 N 1.37798 * 133.37884 * 179.20600 * 22 21 20 24 24 H 0.96997 * 125.07631 * 0.03882 * 23 22 21 25 25 C 1.36554 * 109.85114 * 180.02562 * 23 22 21 26 26 C 1.34552 * 109.89932 * 0.02562 * 25 23 22 27 27 C 1.40671 * 119.51277 * 359.54363 * 22 21 20 28 28 H 1.09005 * 109.47102 * 299.99487 * 1 2 3 29 29 H 1.08996 * 109.47324 * 59.99905 * 1 2 3 30 30 H 1.09008 * 109.46698 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47102 * 240.00513 * 2 1 3 32 32 H 1.09003 * 109.47275 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47613 * 300.00428 * 3 2 1 34 34 H 1.08999 * 109.47133 * 60.00618 * 3 2 1 35 35 H 1.09002 * 109.47323 * 55.00607 * 4 2 1 36 36 H 1.08999 * 109.47396 * 295.00038 * 4 2 1 37 37 H 1.08999 * 109.47306 * 59.99719 * 5 4 2 38 38 H 1.09006 * 109.46800 * 299.99790 * 5 4 2 39 39 H 1.08997 * 109.47613 * 43.37647 * 7 6 5 40 40 H 1.09005 * 109.46939 * 163.37648 * 7 6 5 41 41 H 0.97001 * 120.00067 * 179.97438 * 11 10 8 42 42 H 1.08007 * 119.89779 * 0.02562 * 19 18 16 43 43 H 1.08006 * 119.55590 * 180.02562 * 20 19 18 44 44 H 1.08002 * 119.86520 * 179.90715 * 21 20 19 45 45 H 1.07995 * 125.05007 * 180.02562 * 25 23 22 46 46 H 1.07993 * 126.49423 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5221 2.3836 7 6 4.4016 -0.7549 3.5821 8 6 5.7379 -0.0880 3.3808 9 1 6.2739 -0.2219 2.4528 10 6 6.2764 0.6931 4.3813 11 7 5.6239 0.8557 5.5115 12 14 7.9324 1.5203 4.1315 13 1 8.4570 1.1811 2.7842 14 1 7.7727 2.9923 4.2447 15 1 8.8846 1.0446 5.1670 16 6 4.1820 -2.8637 2.3813 17 8 4.0115 -3.4892 1.3523 18 6 4.5294 -3.5729 3.6257 19 6 5.3729 -2.9792 4.5622 20 6 5.6963 -3.6470 5.7288 21 6 5.1868 -4.9031 5.9911 22 6 4.3467 -5.5236 5.0743 23 7 3.7109 -6.7459 5.0496 24 1 3.7674 -7.4178 5.7468 25 6 2.9891 -6.8699 3.8970 26 6 3.1267 -5.7601 3.1488 27 6 4.0113 -4.8585 3.8810 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6055 -1.7199 1.2950 36 1 1.7517 -0.1584 2.1369 37 1 3.9995 0.1676 1.1419 38 1 3.8532 -1.3939 0.3000 39 1 3.6402 0.0040 3.7618 40 1 4.4558 -1.4255 4.4398 41 1 6.0029 1.4049 6.2156 42 1 5.7747 -1.9939 4.3765 43 1 6.3509 -3.1769 6.4479 44 1 5.4516 -5.4104 6.9070 45 1 2.3960 -7.7308 3.6262 46 1 2.6725 -5.5735 2.1870 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176224794.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:32 Heat of formation + Delta-G solvation = 9.651972 kcal Electronic energy + Delta-G solvation = -26608.142451 eV Core-core repulsion = 23076.671413 eV Total energy + Delta-G solvation = -3531.471039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22538 -40.71551 -37.91793 -37.66241 -36.31243 -34.49333 -32.96970 -31.27583 -29.92481 -29.67839 -28.80986 -27.99289 -25.32138 -25.01321 -23.57276 -22.62530 -21.76852 -20.89343 -20.43987 -18.75880 -18.45027 -17.92666 -17.00849 -16.76862 -16.43617 -16.28156 -15.83709 -15.79692 -15.23411 -15.08052 -14.90222 -14.49461 -14.29739 -14.09528 -14.02532 -13.70092 -13.54181 -13.42641 -13.15792 -12.93476 -12.76035 -12.68404 -12.46694 -12.35999 -12.21222 -12.09781 -11.87554 -11.66149 -11.57927 -11.48820 -11.36178 -10.75604 -10.66201 -10.41046 -9.43409 -9.07321 -8.57320 -8.19336 -6.34625 -0.12801 0.68742 1.41204 1.44859 1.55290 1.75093 2.00558 2.25306 2.34551 2.46760 3.01894 3.09828 3.68794 3.91255 3.97275 4.01824 4.07178 4.16301 4.29406 4.36676 4.43757 4.51618 4.57636 4.68310 4.73843 4.76569 4.82141 4.89797 4.92643 4.98929 5.03615 5.08025 5.12822 5.15287 5.19815 5.25490 5.32748 5.47043 5.50976 5.57763 5.67709 5.68066 5.76577 5.79715 5.87559 6.04881 6.22563 6.58842 6.81654 6.82092 7.29633 7.41081 8.85520 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008241 B = 0.006164 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3396.882915 B = 4541.502189 C = 7397.085777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.114 4.114 5 C 0.118 3.882 6 N -0.593 5.593 7 C 0.222 3.778 8 C -0.546 4.546 9 H 0.049 0.951 10 C 0.032 3.968 11 N -0.908 5.908 12 Si 0.953 3.047 13 H -0.275 1.275 14 H -0.277 1.277 15 H -0.273 1.273 16 C 0.552 3.448 17 O -0.591 6.591 18 C -0.129 4.129 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.091 4.091 22 C 0.065 3.935 23 N -0.578 5.578 24 H 0.436 0.564 25 C 0.087 3.913 26 C -0.244 4.244 27 C -0.088 4.088 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.006 0.994 40 H 0.069 0.931 41 H 0.270 0.730 42 H 0.159 0.841 43 H 0.142 0.858 44 H 0.160 0.840 45 H 0.221 0.779 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 -10.315 -0.204 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.004 4.004 6 N -0.321 5.321 7 C 0.102 3.898 8 C -0.584 4.584 9 H 0.068 0.932 10 C -0.170 4.170 11 N -0.546 5.546 12 Si 0.778 3.222 13 H -0.200 1.200 14 H -0.202 1.202 15 H -0.198 1.198 16 C 0.343 3.657 17 O -0.475 6.475 18 C -0.133 4.133 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.111 4.111 22 C -0.042 4.042 23 N -0.183 5.183 24 H 0.276 0.724 25 C -0.040 4.040 26 C -0.269 4.269 27 C -0.094 4.094 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.176 0.824 43 H 0.160 0.840 44 H 0.178 0.822 45 H 0.237 0.763 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.564 -10.612 -0.462 12.487 hybrid contribution 0.956 0.732 0.148 1.213 sum -5.608 -9.881 -0.314 11.365 Atomic orbital electron populations 1.21784 0.93810 1.01781 1.02354 1.21031 0.96796 0.96350 0.96641 1.21874 1.00862 0.95469 1.02177 1.21866 0.94541 0.99873 0.99030 1.21456 0.94597 0.97136 0.87226 1.48131 1.62484 1.05629 1.15905 1.19995 0.94473 0.91425 0.83873 1.21521 1.04642 1.30690 1.01594 0.93243 1.25570 1.00684 0.96163 0.94548 1.70024 1.39562 1.39168 1.05856 0.85579 0.79912 0.78396 0.78266 1.19981 1.20231 1.19782 1.18565 0.76487 0.82242 0.88455 1.90603 1.54832 1.67652 1.34383 1.19364 1.03197 0.94960 0.95744 1.22498 0.96588 1.01195 0.93712 1.21012 1.01322 0.94796 0.97303 1.20474 0.96761 0.94960 0.98953 1.18218 1.00731 0.88503 0.96710 1.41614 1.42043 1.14521 1.20122 0.72363 1.22434 0.96457 0.99736 0.85403 1.21793 1.06998 0.95774 1.02380 1.19328 1.00462 0.93378 0.96241 0.92842 0.90939 0.92941 0.91035 0.93362 0.90910 0.93088 0.93518 0.92852 0.90389 0.91829 0.97592 0.91375 0.92045 0.82391 0.84000 0.82198 0.76265 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.19 71.98 0.66 -2.59 16 2 C -0.09 -2.49 2.92 -10.80 -0.03 -2.52 16 3 C -0.15 -3.88 8.95 71.98 0.64 -3.23 16 4 C -0.11 -4.09 5.01 30.59 0.15 -3.93 16 5 C 0.12 4.94 5.17 86.38 0.45 5.38 16 6 N -0.59 -28.26 2.49 -830.08 -2.07 -30.33 16 7 C 0.22 11.36 4.68 85.63 0.40 11.76 16 8 C -0.55 -29.09 7.52 25.60 0.19 -28.90 16 9 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 10 C 0.03 1.68 5.45 84.66 0.46 2.14 16 11 N -0.91 -49.00 13.29 21.45 0.28 -48.72 16 12 Si 0.95 41.65 29.54 68.60 2.03 43.67 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 C 0.55 27.05 7.38 86.65 0.64 27.69 16 17 O -0.59 -30.43 15.62 -4.09 -0.06 -30.50 16 18 C -0.13 -5.87 5.53 -19.95 -0.11 -5.98 16 19 C -0.12 -5.33 7.42 22.54 0.17 -5.16 16 20 C -0.13 -4.45 9.99 22.23 0.22 -4.22 16 21 C -0.09 -2.64 10.05 22.40 0.23 -2.41 16 22 C 0.07 2.01 7.27 38.98 0.28 2.29 16 23 N -0.58 -12.22 6.06 -187.63 -1.14 -13.36 16 24 H 0.44 5.20 8.96 -92.71 -0.83 4.37 16 25 C 0.09 1.92 11.82 83.11 0.98 2.91 16 26 C -0.24 -8.24 10.46 23.44 0.25 -8.00 16 27 C -0.09 -3.48 6.11 -20.01 -0.12 -3.60 16 28 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.05 1.39 6.57 -2.39 -0.02 1.37 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 3.25 6.38 -2.39 -0.02 3.24 16 38 H 0.06 2.70 7.34 -2.38 -0.02 2.68 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.07 3.59 3.85 -2.50 -0.01 3.58 16 41 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 42 H 0.16 7.89 3.82 -2.91 -0.01 7.88 16 43 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 44 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 45 H 0.22 2.41 8.06 -2.91 -0.02 2.39 16 46 H 0.13 4.71 7.75 -2.91 -0.02 4.69 16 Total: -1.00 -69.50 371.47 4.66 -64.84 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.16 Total: 32.77 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 5.46 Total: -18.38 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -2.92 Total: -92.40 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.06 Total: -30.50 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -69.50 4.66 -64.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176224794.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.488 kcal (2) G-P(sol) polarization free energy of solvation -69.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds