Wall clock time and date at job start Tue Mar 31 2020 11:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47435 * 2 1 4 4 C 1.52993 * 109.47510 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47450 * 180.02562 * 4 3 2 6 6 C 1.46853 * 111.00000 * 51.74432 * 5 4 3 7 7 C 1.53039 * 109.52254 * 185.84001 * 6 5 4 8 8 C 1.53108 * 109.27953 * 300.81982 * 7 6 5 9 9 C 1.53118 * 109.16393 * 57.65647 * 8 7 6 10 10 C 1.46848 * 111.00489 * 175.95668 * 5 4 3 11 11 H 1.09008 * 109.44912 * 294.17467 * 10 5 4 12 12 C 1.53000 * 109.46088 * 54.14118 * 10 5 4 13 13 N 1.46497 * 109.47072 * 54.47565 * 12 10 5 14 14 C 1.34779 * 119.99779 * 174.95215 * 13 12 10 15 15 O 1.21273 * 120.00172 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99663 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47004 * 179.97438 * 16 14 13 18 18 C 1.76203 * 100.00033 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99899 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99783 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00448 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47164 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47150 * 120.00234 * 22 20 18 25 25 H 1.48498 * 109.47041 * 239.99881 * 22 20 18 26 26 H 1.08999 * 109.46995 * 60.00131 * 1 2 3 27 27 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47056 * 300.00131 * 1 2 3 29 29 H 1.08998 * 109.47056 * 239.99869 * 2 1 3 30 30 H 1.08999 * 109.46995 * 119.99869 * 2 1 3 31 31 H 1.09007 * 109.46923 * 59.99790 * 3 2 1 32 32 H 1.08999 * 109.46922 * 299.99913 * 3 2 1 33 33 H 1.09007 * 109.46956 * 60.00108 * 4 3 2 34 34 H 1.08999 * 109.47201 * 300.00041 * 4 3 2 35 35 H 1.09000 * 109.46260 * 65.82547 * 6 5 4 36 36 H 1.09003 * 109.45247 * 305.84918 * 6 5 4 37 37 H 1.09004 * 109.49764 * 180.87618 * 7 6 5 38 38 H 1.08998 * 109.53321 * 60.78506 * 7 6 5 39 39 H 1.08998 * 109.52586 * 297.75288 * 8 7 6 40 40 H 1.09003 * 109.52562 * 177.55879 * 8 7 6 41 41 H 1.08998 * 109.50641 * 182.40595 * 9 8 7 42 42 H 1.08998 * 109.53632 * 62.30195 * 9 8 7 43 43 H 1.09000 * 109.47088 * 294.47060 * 12 10 5 44 44 H 1.09000 * 109.46753 * 174.47887 * 12 10 5 45 45 H 0.96996 * 120.00175 * 354.68055 * 13 12 10 46 46 H 1.08994 * 109.47143 * 299.99970 * 16 14 13 47 47 H 1.09007 * 109.47112 * 60.00086 * 16 14 13 48 48 H 0.96997 * 120.00290 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.4344 3.6062 1.0778 7 6 3.8550 5.0729 0.9587 8 6 5.3800 5.1707 1.0523 9 6 6.0073 4.3123 -0.0497 10 6 5.5244 2.8677 0.0986 11 1 5.8346 2.4788 1.0685 12 6 6.1329 2.0101 -1.0128 13 7 5.6114 2.4492 -2.3095 14 6 6.0861 1.9032 -3.4466 15 8 6.9446 1.0481 -3.3964 16 6 5.5500 2.3553 -4.7805 17 16 6.3804 1.4431 -6.1050 18 6 5.5841 2.1497 -7.5090 19 1 4.8301 2.9114 -7.3757 20 6 5.9258 1.7274 -8.7863 21 7 6.8444 0.7988 -8.9487 22 14 5.0821 2.4771 -10.2748 23 1 4.0950 3.4915 -9.8256 24 1 6.0965 3.1242 -11.1451 25 1 4.3837 1.4111 -11.0370 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 3.7545 3.2139 2.0430 36 1 2.3499 3.5317 0.9970 37 1 3.4031 5.6478 1.7670 38 1 3.5229 5.4705 -0.0003 39 1 5.7091 4.8098 2.0267 40 1 5.6871 6.2087 0.9245 41 1 7.0933 4.3438 0.0382 42 1 5.7098 4.6971 -1.0252 43 1 5.8699 0.9649 -0.8504 44 1 7.2175 2.1176 -1.0020 45 1 4.9217 3.1301 -2.3495 46 1 4.4778 2.1649 -4.8246 47 1 5.7350 3.4225 -4.9036 48 1 7.0835 0.5039 -9.8413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338446537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:48 Heat of formation + Delta-G solvation = -59.609183 kcal Electronic energy + Delta-G solvation = -24511.232174 eV Core-core repulsion = 21112.201697 eV Total energy + Delta-G solvation = -3399.030476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.14323 -38.62134 -35.90422 -34.59212 -33.16336 -32.38858 -31.48595 -29.15197 -28.75351 -26.13083 -25.38728 -24.85017 -22.73166 -21.50323 -20.88248 -20.53650 -19.51595 -17.80632 -16.47573 -16.31655 -15.87545 -15.56409 -15.40642 -14.82380 -14.76480 -14.48087 -14.42068 -14.08418 -13.76674 -13.69614 -13.42294 -13.16527 -12.95667 -12.59667 -12.50348 -12.43984 -12.10199 -11.68757 -11.60647 -11.47243 -11.35604 -11.14548 -11.04075 -10.99953 -10.97040 -10.82398 -10.71708 -10.45436 -10.38365 -9.75631 -9.29870 -9.03712 -8.71193 -8.56328 -8.17044 -6.44481 -6.17787 -3.87445 3.12205 3.21997 3.24425 3.31372 3.36606 3.53815 3.91351 4.24623 4.39740 4.47796 4.58700 4.66854 4.73836 4.88316 4.91192 4.98828 5.06716 5.10810 5.17395 5.26177 5.29550 5.31250 5.34652 5.40750 5.47495 5.56725 5.59907 5.64504 5.66799 5.69149 5.71784 5.78462 5.85012 5.89686 5.92507 5.93746 5.99113 6.05707 6.10863 6.14070 6.23240 6.71173 6.84830 6.91142 7.64124 7.92407 8.39761 8.75892 9.27762 10.89706 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.003039 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.701973 B = 9210.731789 C =10187.867449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.120 4.120 4 C 0.051 3.949 5 N -0.532 5.532 6 C 0.052 3.948 7 C -0.118 4.118 8 C -0.121 4.121 9 C -0.113 4.113 10 C 0.075 3.925 11 H 0.053 0.947 12 C 0.128 3.872 13 N -0.725 5.725 14 C 0.530 3.470 15 O -0.524 6.524 16 C -0.151 4.151 17 S -0.062 6.062 18 C -0.533 4.533 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.405 0.595 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.571 6.478 24.087 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.076 4.076 5 N -0.257 5.257 6 C -0.076 4.076 7 C -0.156 4.156 8 C -0.159 4.159 9 C -0.151 4.151 10 C -0.033 4.033 11 H 0.071 0.929 12 C 0.003 3.997 13 N -0.380 5.380 14 C 0.316 3.684 15 O -0.399 6.399 16 C -0.302 4.302 17 S 0.164 5.836 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.241 0.759 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.157 5.157 23.617 25.513 hybrid contribution -1.607 1.361 -0.207 2.116 sum -9.764 6.518 23.410 26.189 Atomic orbital electron populations 1.21751 0.95756 1.01607 1.01725 1.21494 0.95960 0.96681 1.02189 1.21722 0.94501 0.96948 1.02556 1.22234 0.95358 0.88758 1.01299 1.61917 1.05189 1.12388 1.46233 1.22183 0.99782 0.93690 0.91942 1.21602 0.95852 0.95655 1.02468 1.21581 0.95574 1.00061 0.98640 1.21640 0.99994 0.93460 0.99983 1.21923 0.87654 0.96482 0.97287 0.92947 1.21302 0.98484 0.97539 0.82420 1.45864 1.43426 1.44090 1.04659 1.20294 0.81695 0.81304 0.85154 1.90689 1.30984 1.31070 1.87194 1.23503 1.04655 1.05145 0.96865 1.85373 1.52252 1.51698 0.94236 1.22919 1.26401 1.26607 0.92243 0.90912 1.24987 0.95142 0.94951 0.98533 1.70029 1.29446 1.27833 1.23052 0.86129 0.79144 0.78927 0.81367 1.19612 1.20599 1.20605 0.92557 0.92785 0.93021 0.91597 0.92323 0.92004 0.90906 0.89760 0.95129 0.95198 0.90065 0.91771 0.90917 0.92440 0.91703 0.91219 0.90622 0.92016 0.91007 0.75908 0.89348 0.89397 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -0.97 4.71 -26.74 -0.13 -1.10 16 4 C 0.05 0.47 4.45 -3.83 -0.02 0.45 16 5 N -0.53 -4.69 3.94 -226.68 -0.89 -5.58 16 6 C 0.05 0.39 5.03 -3.83 -0.02 0.37 16 7 C -0.12 -0.82 6.09 -26.66 -0.16 -0.98 16 8 C -0.12 -0.87 6.00 -26.61 -0.16 -1.03 16 9 C -0.11 -0.96 5.26 -26.65 -0.14 -1.10 16 10 C 0.08 0.69 2.10 -67.72 -0.14 0.55 16 11 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 12 C 0.13 1.53 4.56 -4.04 -0.02 1.51 16 13 N -0.72 -10.05 4.96 -60.30 -0.30 -10.35 16 14 C 0.53 10.10 7.85 -10.98 -0.09 10.01 16 15 O -0.52 -12.12 15.86 5.56 0.09 -12.03 16 16 C -0.15 -3.13 6.16 36.01 0.22 -2.90 16 17 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 18 C -0.53 -15.40 9.50 30.94 0.29 -15.10 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.45 6.19 -51.93 -0.32 0.13 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.94 6.50 -51.93 -0.34 0.60 16 34 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.58 5.84 -51.93 -0.30 0.27 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.72 7.32 -51.93 -0.38 0.34 16 43 H 0.06 0.79 6.76 -51.93 -0.35 0.44 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.41 4.95 7.44 -40.82 -0.30 4.65 16 46 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 47 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -33.09 387.04 -10.74 -43.83 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.73 Total: 0.57 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.24 Total: -9.25 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.46 Total: -41.63 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.09 -10.74 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338446537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.778 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds