Wall clock time and date at job start Tue Mar 31 2020 11:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47435 * 2 1 4 4 C 1.52993 * 109.47510 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47450 * 180.02562 * 4 3 2 6 6 C 1.46853 * 111.00000 * 51.74432 * 5 4 3 7 7 C 1.53039 * 109.52254 * 185.84001 * 6 5 4 8 8 C 1.53108 * 109.27953 * 300.81982 * 7 6 5 9 9 C 1.53118 * 109.16393 * 57.65647 * 8 7 6 10 10 C 1.46848 * 111.00489 * 175.95668 * 5 4 3 11 11 H 1.09008 * 109.44912 * 294.17467 * 10 5 4 12 12 C 1.53000 * 109.46088 * 54.14118 * 10 5 4 13 13 N 1.46497 * 109.47072 * 54.47565 * 12 10 5 14 14 C 1.34779 * 119.99779 * 174.95215 * 13 12 10 15 15 O 1.21273 * 120.00172 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99663 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47004 * 179.97438 * 16 14 13 18 18 C 1.76203 * 100.00033 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99899 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99783 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00448 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47164 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47150 * 120.00234 * 22 20 18 25 25 H 1.48498 * 109.47041 * 239.99881 * 22 20 18 26 26 H 1.08999 * 109.46995 * 60.00131 * 1 2 3 27 27 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47056 * 300.00131 * 1 2 3 29 29 H 1.08998 * 109.47056 * 239.99869 * 2 1 3 30 30 H 1.08999 * 109.46995 * 119.99869 * 2 1 3 31 31 H 1.09007 * 109.46923 * 59.99790 * 3 2 1 32 32 H 1.08999 * 109.46922 * 299.99913 * 3 2 1 33 33 H 1.09007 * 109.46956 * 60.00108 * 4 3 2 34 34 H 1.08999 * 109.47201 * 300.00041 * 4 3 2 35 35 H 1.09000 * 109.46260 * 65.82547 * 6 5 4 36 36 H 1.09003 * 109.45247 * 305.84918 * 6 5 4 37 37 H 1.09004 * 109.49764 * 180.87618 * 7 6 5 38 38 H 1.08998 * 109.53321 * 60.78506 * 7 6 5 39 39 H 1.08998 * 109.52586 * 297.75288 * 8 7 6 40 40 H 1.09003 * 109.52562 * 177.55879 * 8 7 6 41 41 H 1.08998 * 109.50641 * 182.40595 * 9 8 7 42 42 H 1.08998 * 109.53632 * 62.30195 * 9 8 7 43 43 H 1.09000 * 109.47088 * 294.47060 * 12 10 5 44 44 H 1.09000 * 109.46753 * 174.47887 * 12 10 5 45 45 H 0.96996 * 120.00175 * 354.68055 * 13 12 10 46 46 H 1.08994 * 109.47143 * 299.99970 * 16 14 13 47 47 H 1.09007 * 109.47112 * 60.00086 * 16 14 13 48 48 H 0.96997 * 120.00290 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.4344 3.6062 1.0778 7 6 3.8550 5.0729 0.9587 8 6 5.3800 5.1707 1.0523 9 6 6.0073 4.3123 -0.0497 10 6 5.5244 2.8677 0.0986 11 1 5.8346 2.4788 1.0685 12 6 6.1329 2.0101 -1.0128 13 7 5.6114 2.4492 -2.3095 14 6 6.0861 1.9032 -3.4466 15 8 6.9446 1.0481 -3.3964 16 6 5.5500 2.3553 -4.7805 17 16 6.3804 1.4431 -6.1050 18 6 5.5841 2.1497 -7.5090 19 1 4.8301 2.9114 -7.3757 20 6 5.9258 1.7274 -8.7863 21 7 6.8444 0.7988 -8.9487 22 14 5.0821 2.4771 -10.2748 23 1 4.0950 3.4915 -9.8256 24 1 6.0965 3.1242 -11.1451 25 1 4.3837 1.4111 -11.0370 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 3.7545 3.2139 2.0430 36 1 2.3499 3.5317 0.9970 37 1 3.4031 5.6478 1.7670 38 1 3.5229 5.4705 -0.0003 39 1 5.7091 4.8098 2.0267 40 1 5.6871 6.2087 0.9245 41 1 7.0933 4.3438 0.0382 42 1 5.7098 4.6971 -1.0252 43 1 5.8699 0.9649 -0.8504 44 1 7.2175 2.1176 -1.0020 45 1 4.9217 3.1301 -2.3495 46 1 4.4778 2.1649 -4.8246 47 1 5.7350 3.4225 -4.9036 48 1 7.0835 0.5039 -9.8413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338446537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:47 Heat of formation + Delta-G solvation = -80.607670 kcal Electronic energy + Delta-G solvation = -24512.142736 eV Core-core repulsion = 21112.201697 eV Total energy + Delta-G solvation = -3399.941039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.10221 -39.92257 -36.59671 -35.73931 -34.57520 -33.84702 -32.55902 -30.55786 -29.43146 -27.72810 -26.97514 -25.52079 -23.41273 -22.26137 -21.88070 -21.55716 -20.34665 -19.82869 -17.84077 -17.44372 -16.87399 -16.82828 -16.47827 -16.41044 -16.05360 -15.69946 -15.17747 -15.08985 -14.89599 -14.59514 -14.38989 -14.35824 -14.10573 -13.74402 -13.71342 -13.14783 -13.12421 -13.07632 -12.89663 -12.85126 -12.58972 -12.25821 -12.14752 -12.03405 -11.77938 -11.69920 -11.60078 -11.47374 -11.17775 -11.14810 -11.01585 -10.91913 -10.25862 -10.02046 -9.27451 -8.65083 -8.33739 -6.11493 1.28698 1.42041 1.48381 1.59880 1.66643 2.27513 2.35366 2.86134 3.00348 3.35127 3.62454 3.78017 3.92870 4.01211 4.06485 4.09114 4.23033 4.26074 4.30883 4.32678 4.41435 4.42812 4.52897 4.56682 4.62607 4.68310 4.72478 4.77953 4.84238 4.87977 4.96167 5.01352 5.05608 5.10547 5.15876 5.26108 5.28522 5.33660 5.39608 5.43123 5.45930 5.48599 5.52608 6.12194 6.17831 6.21194 6.60006 7.07637 7.30932 8.75775 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.003039 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.701973 B = 9210.731789 C =10187.867449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.112 4.112 4 C 0.054 3.946 5 N -0.538 5.538 6 C 0.052 3.948 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.112 4.112 10 C 0.085 3.915 11 H 0.063 0.937 12 C 0.127 3.873 13 N -0.697 5.697 14 C 0.532 3.468 15 O -0.570 6.570 16 C -0.127 4.127 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.081 0.919 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.274 1.274 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.417 0.583 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 8.486 25.344 29.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.073 4.073 5 N -0.263 5.263 6 C -0.075 4.075 7 C -0.153 4.153 8 C -0.155 4.155 9 C -0.150 4.150 10 C -0.024 4.024 11 H 0.081 0.919 12 C 0.003 3.997 13 N -0.351 5.351 14 C 0.318 3.682 15 O -0.449 6.449 16 C -0.278 4.278 17 S 0.077 5.923 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.199 1.199 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.255 0.745 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.067 7.201 24.921 27.825 hybrid contribution -1.036 0.745 -0.455 1.354 sum -11.102 7.945 24.466 28.017 Atomic orbital electron populations 1.21740 0.95062 1.01869 1.02027 1.21490 0.96573 0.96616 1.01670 1.21652 0.93629 0.96918 1.02735 1.22150 0.96035 0.88869 1.00288 1.61919 1.04844 1.12280 1.47289 1.22238 1.00036 0.93738 0.91478 1.21595 0.95679 0.95320 1.02706 1.21556 0.95630 1.00060 0.98207 1.21637 1.00187 0.93047 1.00170 1.21822 0.87940 0.96378 0.96214 0.91877 1.21435 0.98309 0.97948 0.82044 1.45607 1.42466 1.42934 1.04079 1.20034 0.81340 0.81047 0.85793 1.90678 1.33222 1.33311 1.87716 1.23338 1.04566 1.04854 0.95073 1.85539 1.54594 1.54339 0.97782 1.23238 1.26598 1.26834 0.92692 0.90042 1.26124 0.95694 0.95224 1.02082 1.70188 1.31127 1.29424 1.24054 0.84904 0.78134 0.78254 0.76637 1.18071 1.19865 1.19897 0.92991 0.92604 0.91946 0.93201 0.91798 0.90574 0.91826 0.92139 0.94799 0.94736 0.89405 0.90230 0.91635 0.91794 0.91084 0.91177 0.91611 0.92710 0.91699 0.74526 0.87678 0.87535 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.13 -1.92 5.93 30.59 0.18 -1.74 16 3 C -0.11 -1.66 4.71 30.59 0.14 -1.51 16 4 C 0.05 0.93 4.45 86.30 0.38 1.31 16 5 N -0.54 -8.49 3.94 -871.09 -3.43 -11.92 16 6 C 0.05 0.64 5.03 86.33 0.43 1.07 16 7 C -0.12 -1.27 6.09 30.64 0.19 -1.09 16 8 C -0.12 -1.36 6.00 30.67 0.18 -1.18 16 9 C -0.11 -1.70 5.26 30.65 0.16 -1.54 16 10 C 0.09 1.42 2.10 44.94 0.09 1.51 16 11 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 12 C 0.13 2.99 4.56 86.38 0.39 3.38 16 13 N -0.70 -18.86 4.96 -463.07 -2.30 -21.16 16 14 C 0.53 20.39 7.85 87.66 0.69 21.07 16 15 O -0.57 -27.13 15.86 -3.01 -0.05 -27.17 16 16 C -0.13 -5.23 6.16 71.24 0.44 -4.80 16 17 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 18 C -0.55 -31.69 9.50 67.95 0.65 -31.04 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 22 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.93 6.19 -2.38 -0.01 0.91 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.33 6.50 -2.38 -0.02 1.32 16 34 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 0.99 5.84 -2.39 -0.01 0.97 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.13 7.32 -2.39 -0.02 1.11 16 43 H 0.05 1.40 6.76 -2.39 -0.02 1.39 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.42 9.56 7.44 -92.71 -0.69 8.87 16 46 H 0.10 3.97 8.14 -2.40 -0.02 3.95 16 47 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 48 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -73.18 387.04 0.72 -72.46 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.23 Total: 22.20 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.12 Total: -14.61 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -5.44 Total: -89.35 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -73.18 0.72 -72.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338446537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.148 kcal (2) G-P(sol) polarization free energy of solvation -73.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds