Wall clock time and date at job start Tue Mar 31 2020 10:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47157 * 2 1 4 4 C 1.52995 * 109.47298 * 120.00095 * 2 1 3 5 5 C 1.53000 * 109.47048 * 65.00210 * 4 2 1 6 6 N 1.46499 * 109.47049 * 180.02562 * 5 4 2 7 7 C 1.46496 * 120.00439 * 71.13402 * 6 5 4 8 8 C 1.52999 * 109.47366 * 263.74620 * 7 6 5 9 9 C 1.47198 * 109.47604 * 179.97438 * 8 7 6 10 10 N 6.85015 * 87.44910 * 99.27149 * 2 1 3 11 11 C 1.34784 * 119.99652 * 251.13516 * 6 5 4 12 12 O 1.21550 * 119.99705 * 183.40015 * 11 6 5 13 13 C 1.47878 * 120.00133 * 3.39604 * 11 6 5 14 14 C 1.39928 * 120.02112 * 28.87889 * 13 11 6 15 15 C 1.38338 * 120.35393 * 179.74109 * 14 13 11 16 16 C 1.37757 * 120.41163 * 0.55860 * 15 14 13 17 17 C 1.40747 * 120.03862 * 359.69760 * 16 15 14 18 18 C 1.41438 * 120.17419 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00149 * 27.36758 * 18 17 16 20 20 C 1.39939 * 119.99885 * 207.35950 * 18 17 16 21 21 N 1.30826 * 119.99745 * 11.86018 * 20 18 17 22 22 Si 1.86799 * 120.00141 * 191.85327 * 20 18 17 23 23 H 1.48491 * 109.47064 * 90.00307 * 22 20 18 24 24 H 1.48496 * 109.47441 * 210.00718 * 22 20 18 25 25 H 1.48504 * 109.46915 * 330.00386 * 22 20 18 26 26 C 1.38995 * 120.02808 * 209.15558 * 13 11 6 27 27 H 1.08999 * 109.46769 * 300.00098 * 1 2 3 28 28 H 1.09002 * 109.47140 * 59.99693 * 1 2 3 29 29 H 1.08996 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47378 * 240.00352 * 2 1 3 31 31 H 1.09004 * 109.46986 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47346 * 300.00181 * 3 2 1 33 33 H 1.08999 * 109.47361 * 60.00265 * 3 2 1 34 34 H 1.08997 * 109.47651 * 304.99763 * 4 2 1 35 35 H 1.09005 * 109.47235 * 184.99563 * 4 2 1 36 36 H 1.08993 * 109.47627 * 60.00161 * 5 4 2 37 37 H 1.09007 * 109.47068 * 299.99597 * 5 4 2 38 38 H 1.09001 * 109.47551 * 143.74749 * 7 6 5 39 39 H 1.09002 * 109.47194 * 23.74478 * 7 6 5 40 40 H 1.09000 * 109.47229 * 300.00430 * 8 7 6 41 41 H 1.09001 * 109.46680 * 59.99595 * 8 7 6 42 42 H 1.07995 * 119.82187 * 359.97438 * 14 13 11 43 43 H 1.07995 * 119.79035 * 180.27974 * 15 14 13 44 44 H 1.07993 * 119.97355 * 179.72224 * 16 15 14 45 45 H 0.97003 * 119.99417 * 179.97438 * 21 20 18 46 46 H 1.07999 * 120.20110 * 359.95245 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1878 6 7 2.1231 -2.8860 2.3843 7 6 1.5044 -2.6223 3.6857 8 6 2.3244 -1.5714 4.4368 9 6 1.7025 -1.3060 5.7443 10 7 1.2251 -1.1026 6.7540 11 6 3.1413 -3.7638 2.2876 12 8 3.5054 -4.3826 3.2684 13 6 3.8153 -3.9743 0.9883 14 6 3.8680 -2.9368 0.0508 15 6 4.5014 -3.1244 -1.1647 16 6 5.0774 -4.3377 -1.4709 17 6 5.0297 -5.3946 -0.5426 18 6 5.6207 -6.6413 -0.8538 19 1 6.4520 -6.6882 -1.5417 20 6 5.1284 -7.8141 -0.2703 21 7 3.9897 -7.7962 0.3736 22 14 6.0969 -9.4052 -0.4108 23 1 7.0297 -9.5200 0.7389 24 1 5.1600 -10.5572 -0.4052 25 1 6.8711 -9.4030 -1.6781 26 6 4.3919 -5.2045 0.6950 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6055 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2950 36 1 2.0699 -2.6550 0.3002 37 1 0.5489 -2.2724 1.1420 38 1 1.4747 -3.5437 4.2674 39 1 0.4895 -2.2533 3.5375 40 1 3.3394 -1.9403 4.5850 41 1 2.3541 -0.6500 3.8552 42 1 3.4150 -1.9833 0.2789 43 1 4.5406 -2.3160 -1.8797 44 1 5.5662 -4.4778 -2.4236 45 1 3.6483 -8.6092 0.7778 46 1 4.3504 -6.0092 1.4141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349401340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:45 Heat of formation + Delta-G solvation = -3.990324 kcal Electronic energy + Delta-G solvation = -26258.545530 eV Core-core repulsion = 22726.482917 eV Total energy + Delta-G solvation = -3532.062613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.42550 -38.90735 -38.26207 -37.75906 -35.99294 -35.53744 -33.24734 -31.45165 -31.21851 -29.90043 -27.86066 -27.25828 -25.82735 -24.47922 -22.97067 -22.79171 -20.77034 -20.34989 -19.23019 -18.54388 -17.68965 -17.57928 -16.84037 -16.71589 -16.14987 -15.88802 -15.59568 -15.31521 -15.02638 -14.70362 -14.57350 -14.36240 -14.29246 -14.09387 -13.76421 -13.68425 -13.37412 -13.30667 -13.07811 -12.87922 -12.82042 -12.74431 -12.58601 -12.40942 -12.15612 -12.03118 -11.94442 -11.76541 -11.59780 -11.42161 -11.28038 -11.23795 -11.02524 -10.61831 -9.73297 -9.32337 -9.23135 -8.58853 -6.34962 0.49712 1.06185 1.38262 1.48959 1.51398 1.62867 1.75767 1.99929 2.14759 2.21794 2.80659 3.09843 3.70908 3.73253 3.98700 4.01767 4.14868 4.18826 4.25679 4.35530 4.44438 4.53016 4.64349 4.73980 4.77265 4.84945 4.90480 4.96761 4.97949 5.02051 5.10034 5.13913 5.20692 5.26907 5.29388 5.31525 5.39224 5.51334 5.57818 5.63181 5.66688 5.71097 5.92339 6.01414 6.11776 6.33875 6.42320 6.52332 6.67806 6.94233 7.00290 7.28898 8.36550 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.004014 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.656602 B = 6974.168618 C = 8639.453853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.134 4.134 5 C 0.071 3.929 6 N -0.597 5.597 7 C 0.121 3.879 8 C -0.037 4.037 9 C 0.243 3.757 10 N -0.488 5.488 11 C 0.564 3.436 12 O -0.584 6.584 13 C -0.137 4.137 14 C -0.205 4.205 15 C -0.100 4.100 16 C -0.213 4.213 17 C 0.066 3.934 18 C -0.499 4.499 19 H 0.079 0.921 20 C 0.030 3.970 21 N -0.834 5.834 22 Si 0.980 3.020 23 H -0.268 1.268 24 H -0.270 1.270 25 H -0.253 1.253 26 C -0.127 4.127 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.145 0.855 42 H 0.165 0.835 43 H 0.137 0.863 44 H 0.104 0.896 45 H 0.284 0.716 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 15.543 -2.201 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.171 4.171 5 C -0.050 4.050 6 N -0.327 5.327 7 C -0.004 4.004 8 C -0.078 4.078 9 C -0.074 4.074 10 N -0.166 5.166 11 C 0.356 3.644 12 O -0.465 6.465 13 C -0.141 4.141 14 C -0.223 4.223 15 C -0.118 4.118 16 C -0.233 4.233 17 C 0.064 3.936 18 C -0.529 4.529 19 H 0.097 0.903 20 C -0.184 4.184 21 N -0.461 5.461 22 Si 0.801 3.199 23 H -0.193 1.193 24 H -0.195 1.195 25 H -0.176 1.176 26 C -0.148 4.148 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.163 0.837 42 H 0.182 0.818 43 H 0.155 0.845 44 H 0.122 0.878 45 H 0.094 0.906 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.399 15.372 -0.059 17.060 hybrid contribution 0.703 -1.459 -0.241 1.637 sum -6.695 13.913 -0.301 15.443 Atomic orbital electron populations 1.21911 0.94739 1.01968 1.02134 1.21050 0.96302 0.96412 0.97563 1.21820 1.01021 0.95370 1.02083 1.22182 1.01739 0.93421 0.99807 1.22750 1.00866 0.93233 0.88111 1.47708 1.33629 1.42084 1.09295 1.21340 0.97308 0.98236 0.83465 1.19867 0.99768 1.03130 0.85068 1.29176 0.92275 0.91594 0.94382 1.81216 1.11120 1.10924 1.13304 1.18826 0.79531 0.77891 0.88169 1.90682 1.66231 1.49382 1.40228 1.19739 1.03446 0.96256 0.94614 1.21694 1.06437 0.99589 0.94598 1.20960 0.97308 0.96419 0.97120 1.21441 1.07502 0.95459 0.98859 1.17905 0.91292 0.93649 0.90758 1.19851 1.16068 0.91746 1.25265 0.90274 1.26731 0.94836 1.04372 0.92421 1.69854 1.17438 1.31135 1.27675 0.85221 0.78628 0.76111 0.79895 1.19311 1.19505 1.17643 1.21425 1.01000 0.95494 0.96887 0.92004 0.92614 0.92559 0.91238 0.92769 0.92479 0.92156 0.89306 0.91161 0.87726 0.89132 0.91689 0.86200 0.87741 0.83731 0.81819 0.84484 0.87795 0.90602 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.95 71.98 0.64 -1.08 16 2 C -0.09 -1.20 2.91 -10.80 -0.03 -1.24 16 3 C -0.15 -1.65 9.19 71.98 0.66 -0.99 16 4 C -0.13 -1.89 3.44 30.59 0.11 -1.79 16 5 C 0.07 1.45 4.61 86.38 0.40 1.85 16 6 N -0.60 -15.84 2.56 -825.18 -2.11 -17.95 16 7 C 0.12 2.51 5.09 86.38 0.44 2.95 16 8 C -0.04 -0.64 5.84 28.79 0.17 -0.48 16 9 C 0.24 5.23 15.43 89.45 1.38 6.61 16 10 N -0.49 -13.40 18.53 20.00 0.37 -13.03 16 11 C 0.56 22.21 7.40 86.79 0.64 22.86 16 12 O -0.58 -27.51 16.34 -3.87 -0.06 -27.57 16 13 C -0.14 -5.98 5.48 -20.13 -0.11 -6.09 16 14 C -0.20 -7.16 7.41 22.70 0.17 -6.99 16 15 C -0.10 -3.63 10.01 22.18 0.22 -3.41 16 16 C -0.21 -9.46 9.78 22.77 0.22 -9.24 16 17 C 0.07 3.47 5.56 -21.32 -0.12 3.35 16 18 C -0.50 -26.76 9.07 23.47 0.21 -26.55 16 19 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 20 C 0.03 1.53 5.24 85.25 0.45 1.98 16 21 N -0.83 -45.43 10.80 21.82 0.24 -45.19 16 22 Si 0.98 39.43 29.58 68.60 2.03 41.46 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 25 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 26 C -0.13 -6.76 8.21 23.01 0.19 -6.57 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.68 6.56 -2.39 -0.02 0.66 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.90 6.40 -2.39 -0.02 0.88 16 35 H 0.07 1.13 6.88 -2.38 -0.02 1.11 16 36 H 0.11 2.69 4.07 -2.39 -0.01 2.68 16 37 H 0.09 1.49 6.56 -2.38 -0.02 1.47 16 38 H 0.06 1.71 7.57 -2.39 -0.02 1.69 16 39 H 0.12 1.66 8.02 -2.39 -0.02 1.64 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.15 1.54 6.08 -2.39 -0.01 1.52 16 42 H 0.16 4.27 3.01 -2.91 -0.01 4.26 16 43 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 45 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 46 H 0.10 5.72 5.99 -2.91 -0.02 5.70 16 Total: -1.00 -69.46 373.16 7.10 -62.37 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 1.00 Total: 24.73 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 5.64 Total: -24.81 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.50 Total: -76.17 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.06 Total: -27.57 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -69.46 7.10 -62.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349401340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.376 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds