Wall clock time and date at job start Tue Mar 31 2020 11:31:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.46497 * 120.00484 * 2 1
4 4 C 1.53006 * 109.46963 * 270.00081 * 3 2 1
5 5 C 1.52999 * 109.46631 * 299.99331 * 4 3 2
6 6 C 1.52993 * 109.47500 * 59.99358 * 4 3 2
7 7 C 1.47197 * 109.47070 * 179.97438 * 4 3 2
8 8 N 4.80457 * 118.48778 * 340.02432 * 2 1 3
9 9 C 1.34777 * 120.00020 * 179.97438 * 2 1 3
10 10 O 1.21276 * 120.00117 * 180.02562 * 9 2 1
11 11 C 1.50703 * 119.99807 * 0.27569 * 9 2 1
12 12 C 1.53003 * 109.47252 * 179.72544 * 11 9 2
13 13 H 1.09000 * 109.46766 * 305.00272 * 12 11 9
14 14 C 1.50696 * 109.47252 * 65.00018 * 12 11 9
15 15 H 1.08000 * 120.00385 * 234.68635 * 14 12 11
16 16 C 1.37881 * 119.99687 * 54.67602 * 14 12 11
17 17 N 1.31512 * 120.00310 * 4.87974 * 16 14 12
18 18 Si 1.86805 * 120.00034 * 184.87267 * 16 14 12
19 19 H 1.48500 * 109.46886 * 0.02562 * 18 16 14
20 20 H 1.48498 * 109.46877 * 120.00349 * 18 16 14
21 21 H 1.48500 * 109.47074 * 240.00504 * 18 16 14
22 22 C 1.50699 * 109.47038 * 185.00387 * 12 11 9
23 23 C 1.38237 * 119.99708 * 151.49066 * 22 12 11
24 24 C 1.38231 * 119.99613 * 179.78835 * 23 22 12
25 25 C 1.38237 * 120.00335 * 0.43657 * 24 23 22
26 26 C 1.38237 * 119.99507 * 359.80955 * 25 24 23
27 27 C 1.38226 * 120.00167 * 359.97438 * 26 25 24
28 28 H 1.08994 * 109.47267 * 270.00321 * 1 2 3
29 29 H 1.08999 * 109.46536 * 30.00819 * 1 2 3
30 30 H 1.09000 * 109.46983 * 149.99956 * 1 2 3
31 31 H 1.09007 * 109.47016 * 29.99172 * 3 2 1
32 32 H 1.09000 * 109.47837 * 149.99533 * 3 2 1
33 33 H 1.09005 * 109.47169 * 60.00190 * 5 4 3
34 34 H 1.08997 * 109.47433 * 180.02562 * 5 4 3
35 35 H 1.09000 * 109.47399 * 300.00364 * 5 4 3
36 36 H 1.09002 * 109.47301 * 60.00001 * 6 4 3
37 37 H 1.08998 * 109.47448 * 180.02562 * 6 4 3
38 38 H 1.09005 * 109.47043 * 300.00264 * 6 4 3
39 39 H 1.08997 * 109.47212 * 299.72435 * 11 9 2
40 40 H 1.09002 * 109.46706 * 59.72934 * 11 9 2
41 41 H 0.96998 * 120.00643 * 179.97438 * 17 16 14
42 42 H 1.07997 * 120.00194 * 359.97438 * 23 22 12
43 43 H 1.08006 * 119.99942 * 180.27249 * 24 23 22
44 44 H 1.07994 * 120.00106 * 179.84074 * 25 24 23
45 45 H 1.08004 * 119.99611 * 179.97438 * 26 25 24
46 46 H 1.08007 * 120.00058 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2686 0.0000
4 6 2.4526 1.7103 -1.4426
5 6 3.2795 0.6439 -2.1637
6 6 1.1159 1.8932 -2.1639
7 6 3.1882 2.9853 -1.4426
8 7 3.7567 3.9688 -1.4426
9 6 2.1389 -1.1672 0.0005
10 8 3.3517 -1.1672 0.0010
11 6 1.3854 -2.4723 -0.0052
12 6 2.3796 -3.6353 -0.0102
13 1 3.0637 -3.5247 -0.8515
14 6 3.1624 -3.6326 1.2775
15 1 4.2420 -3.6170 1.2532
16 6 2.5002 -3.6498 2.4868
17 7 1.1906 -3.7654 2.5178
18 14 3.4634 -3.5091 4.0811
19 1 4.9118 -3.3901 3.7756
20 1 3.0146 -2.3054 4.8260
21 1 3.2296 -4.7194 4.9092
22 6 1.6301 -4.9363 -0.1398
23 6 2.2343 -6.0251 -0.7401
24 6 1.5485 -7.2197 -0.8550
25 6 0.2552 -7.3229 -0.3779
26 6 -0.3508 -6.2325 0.2178
27 6 0.3367 -5.0393 0.3367
28 1 -0.3633 0.0001 1.0276
29 1 -0.3632 0.8899 -0.5140
30 1 -0.3633 -0.8900 -0.5138
31 1 1.6085 2.0284 0.5137
32 1 3.1500 1.1384 0.5139
33 1 2.7345 -0.3001 -2.1636
34 1 3.4616 0.9586 -3.1912
35 1 4.2319 0.5136 -1.6498
36 1 0.5267 2.6529 -1.6501
37 1 1.2975 2.2074 -3.1917
38 1 0.5708 0.9492 -2.1638
39 1 0.7587 -2.5339 0.8845
40 1 0.7588 -2.5261 -0.8955
41 1 0.7247 -3.7779 3.3685
42 1 3.2433 -5.9433 -1.1165
43 1 2.0221 -8.0718 -1.3200
44 1 -0.2816 -8.2555 -0.4700
45 1 -1.3614 -6.3131 0.5902
46 1 -0.1370 -4.1872 0.8017
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000353244282.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:31:49
Heat of formation + Delta-G solvation = 19.289158 kcal
Electronic energy + Delta-G solvation = -26935.787512 eV
Core-core repulsion = 23404.734373 eV
Total energy + Delta-G solvation = -3531.053139 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-39.86686 -38.33065 -37.42903 -35.51804 -34.21238 -33.61203 -31.09174 -29.85268
-28.78306 -27.88564 -27.18607 -26.07325 -24.99409 -22.96120 -22.04755 -21.33731
-19.78438 -18.33992 -17.20531 -16.63728 -16.13718 -15.64056 -15.45829 -15.13376
-14.85556 -14.41724 -13.95270 -13.86335 -13.56673 -13.45663 -13.10485 -12.88868
-12.80979 -12.64623 -12.45451 -12.25821 -12.19767 -11.76876 -11.68758 -11.60679
-11.48884 -11.39097 -11.37783 -11.10151 -10.94246 -10.85463 -10.77090 -10.43057
-10.18305 -9.95255 -9.31416 -9.19771 -8.80365 -8.44981 -8.20823 -7.82216
-7.45743 -6.00010 -4.09310 2.47971 2.56716 2.67590 2.74667 3.27853
3.36581 3.40468 3.43782 3.57178 4.01537 4.42028 4.72131 4.74400
4.93465 4.95659 5.22883 5.29904 5.37620 5.51436 5.58111 5.67151
5.80071 5.81223 5.83352 5.87965 5.91777 5.93956 5.97982 6.01058
6.11131 6.32410 6.41840 6.42532 6.56428 6.68343 6.75858 6.90011
7.11333 7.13852 7.24608 7.44858 7.51352 7.52638 7.66502 7.91538
7.96297 8.10677 8.16065 8.32694 8.87773 9.09165 9.54263 10.93995
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.014149 B = 0.004458 C = 0.003884
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1978.451154 B = 6279.005509 C = 7207.497431
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.078 3.922
2 N -0.628 5.628
3 C 0.131 3.869
4 C 0.016 3.984
5 C -0.132 4.132
6 C -0.142 4.142
7 C 0.225 3.775
8 N -0.443 5.443
9 C 0.526 3.474
10 O -0.516 6.516
11 C -0.137 4.137
12 C 0.087 3.913
13 H 0.037 0.963
14 C -0.468 4.468
15 H 0.059 0.941
16 C 0.061 3.939
17 N -0.889 5.889
18 Si 0.888 3.112
19 H -0.274 1.274
20 H -0.286 1.286
21 H -0.286 1.286
22 C -0.027 4.027
23 C -0.132 4.132
24 C -0.142 4.142
25 C -0.154 4.154
26 C -0.143 4.143
27 C -0.069 4.069
28 H 0.053 0.947
29 H 0.066 0.934
30 H 0.076 0.924
31 H 0.076 0.924
32 H 0.090 0.910
33 H 0.079 0.921
34 H 0.053 0.947
35 H 0.073 0.927
36 H 0.061 0.939
37 H 0.061 0.939
38 H 0.083 0.917
39 H 0.133 0.867
40 H 0.053 0.947
41 H 0.259 0.741
42 H 0.105 0.895
43 H 0.101 0.899
44 H 0.098 0.902
45 H 0.101 0.899
46 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.998 4.781 -7.430 11.272
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.365 5.365
3 C 0.005 3.995
4 C 0.011 3.989
5 C -0.190 4.190
6 C -0.200 4.200
7 C -0.094 4.094
8 N -0.118 5.118
9 C 0.316 3.684
10 O -0.390 6.390
11 C -0.176 4.176
12 C 0.068 3.932
13 H 0.056 0.944
14 C -0.506 4.506
15 H 0.078 0.922
16 C -0.139 4.139
17 N -0.529 5.529
18 Si 0.717 3.283
19 H -0.198 1.198
20 H -0.212 1.212
21 H -0.213 1.213
22 C -0.028 4.028
23 C -0.150 4.150
24 C -0.160 4.160
25 C -0.172 4.172
26 C -0.162 4.162
27 C -0.087 4.087
28 H 0.071 0.929
29 H 0.084 0.916
30 H 0.094 0.906
31 H 0.095 0.905
32 H 0.109 0.891
33 H 0.098 0.902
34 H 0.072 0.928
35 H 0.092 0.908
36 H 0.080 0.920
37 H 0.080 0.920
38 H 0.102 0.898
39 H 0.151 0.849
40 H 0.071 0.929
41 H 0.070 0.930
42 H 0.123 0.877
43 H 0.119 0.881
44 H 0.117 0.883
45 H 0.119 0.881
46 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -5.582 6.242 -7.266 11.087
hybrid contribution 0.169 -0.403 1.241 1.316
sum -5.413 5.839 -6.025 9.985
Atomic orbital electron populations
1.21852 0.80038 1.02716 1.01916 1.47954 1.06510 1.05216 1.76800
1.21213 0.99286 0.86610 0.92358 1.18829 0.94599 0.85738 0.99779
1.21872 1.00787 0.97400 0.98987 1.21997 0.94513 1.03398 1.00081
1.29113 0.93248 0.94143 0.92897 1.81176 1.09726 1.12217 1.08674
1.21197 0.88380 0.84916 0.73860 1.90627 1.14164 1.86798 1.47386
1.21976 1.00604 0.91508 1.03554 1.17651 0.91946 0.86581 0.96997
0.94440 1.21014 0.93108 1.47102 0.89339 0.92247 1.24862 0.94973
0.95185 0.98851 1.69670 1.06718 1.51206 1.25313 0.86562 0.80664
0.77349 0.83702 1.19836 1.21228 1.21280 1.20339 0.93078 0.97118
0.92236 1.20900 0.99133 0.93361 1.01635 1.20802 0.95297 0.97214
1.02663 1.20767 0.95816 0.97971 1.02693 1.21048 0.99334 0.94445
1.01328 1.21347 0.94426 0.97823 0.95098 0.92882 0.91578 0.90560
0.90534 0.89136 0.90247 0.92768 0.90845 0.91954 0.91977 0.89797
0.84943 0.92890 0.93019 0.87682 0.88134 0.88337 0.88113 0.84294
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.83 9.15 59.85 0.55 1.38 16
2 N -0.63 -8.78 2.40 -181.57 -0.44 -9.21 16
3 C 0.13 1.65 4.56 -4.04 -0.02 1.63 16
4 C 0.02 0.18 0.77 -157.30 -0.12 0.06 16
5 C -0.13 -1.66 7.10 37.16 0.26 -1.40 16
6 C -0.14 -1.20 7.18 37.15 0.27 -0.94 16
7 C 0.22 2.91 13.86 -20.76 -0.29 2.62 16
8 N -0.44 -6.72 18.54 42.15 0.78 -5.94 16
9 C 0.53 9.68 5.83 -10.98 -0.06 9.61 16
10 O -0.52 -11.16 12.76 5.56 0.07 -11.09 16
11 C -0.14 -2.62 2.63 -27.88 -0.07 -2.69 16
12 C 0.09 1.95 1.97 -92.92 -0.18 1.77 16
13 H 0.04 0.85 7.91 -51.93 -0.41 0.44 16
14 C -0.47 -11.94 7.27 -34.44 -0.25 -12.19 16
15 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16
16 C 0.06 1.54 5.12 -17.82 -0.09 1.45 16
17 N -0.89 -21.65 7.99 55.43 0.44 -21.21 16
18 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16
19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16
20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
22 C -0.03 -0.59 4.69 -104.63 -0.49 -1.08 16
23 C -0.13 -2.70 9.71 -39.58 -0.38 -3.09 16
24 C -0.14 -2.62 10.05 -39.58 -0.40 -3.02 16
25 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16
26 C -0.14 -2.71 10.05 -39.59 -0.40 -3.11 16
27 C -0.07 -1.42 7.45 -39.59 -0.30 -1.71 16
28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
29 H 0.07 0.50 6.05 -51.93 -0.31 0.19 16
30 H 0.08 0.79 6.43 -51.93 -0.33 0.46 16
31 H 0.08 0.80 8.07 -51.92 -0.42 0.38 16
32 H 0.09 1.36 7.42 -51.93 -0.39 0.98 16
33 H 0.08 1.09 6.15 -51.93 -0.32 0.77 16
34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
35 H 0.07 1.07 7.73 -51.93 -0.40 0.67 16
36 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16
37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.08 0.68 5.99 -51.93 -0.31 0.37 16
39 H 0.13 2.75 4.67 -51.93 -0.24 2.51 16
40 H 0.05 0.88 7.40 -51.93 -0.38 0.50 16
41 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16
42 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16
43 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16
44 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16
45 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16
46 H 0.14 2.92 5.18 -52.48 -0.27 2.65 16
LS Contribution 363.82 15.07 5.48 5.48
Total: -1.00 -28.55 363.82 -7.77 -36.32
By element:
Atomic # 1 Polarization: 10.34 SS G_CDS: -6.72 Total: 3.62 kcal
Atomic # 6 Polarization: -11.53 SS G_CDS: -2.37 Total: -13.91 kcal
Atomic # 7 Polarization: -37.15 SS G_CDS: 0.79 Total: -36.36 kcal
Atomic # 8 Polarization: -11.16 SS G_CDS: 0.07 Total: -11.09 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -28.55 -7.77 -36.32 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000353244282.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.610 kcal
(2) G-P(sol) polarization free energy of solvation -28.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.059 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.289 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds