Wall clock time and date at job start Tue Mar 31 2020 11:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00484 * 2 1 4 4 C 1.53006 * 109.46963 * 270.00081 * 3 2 1 5 5 C 1.52999 * 109.46631 * 299.99331 * 4 3 2 6 6 C 1.52993 * 109.47500 * 59.99358 * 4 3 2 7 7 C 1.47197 * 109.47070 * 179.97438 * 4 3 2 8 8 N 4.80457 * 118.48778 * 340.02432 * 2 1 3 9 9 C 1.34777 * 120.00020 * 179.97438 * 2 1 3 10 10 O 1.21276 * 120.00117 * 180.02562 * 9 2 1 11 11 C 1.50703 * 119.99807 * 0.27569 * 9 2 1 12 12 C 1.53003 * 109.47252 * 179.72544 * 11 9 2 13 13 H 1.09000 * 109.46766 * 305.00272 * 12 11 9 14 14 C 1.50696 * 109.47252 * 65.00018 * 12 11 9 15 15 H 1.08000 * 120.00385 * 234.68635 * 14 12 11 16 16 C 1.37881 * 119.99687 * 54.67602 * 14 12 11 17 17 N 1.31512 * 120.00310 * 4.87974 * 16 14 12 18 18 Si 1.86805 * 120.00034 * 184.87267 * 16 14 12 19 19 H 1.48500 * 109.46886 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46877 * 120.00349 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00504 * 18 16 14 22 22 C 1.50699 * 109.47038 * 185.00387 * 12 11 9 23 23 C 1.38237 * 119.99708 * 151.49066 * 22 12 11 24 24 C 1.38231 * 119.99613 * 179.78835 * 23 22 12 25 25 C 1.38237 * 120.00335 * 0.43657 * 24 23 22 26 26 C 1.38237 * 119.99507 * 359.80955 * 25 24 23 27 27 C 1.38226 * 120.00167 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47267 * 270.00321 * 1 2 3 29 29 H 1.08999 * 109.46536 * 30.00819 * 1 2 3 30 30 H 1.09000 * 109.46983 * 149.99956 * 1 2 3 31 31 H 1.09007 * 109.47016 * 29.99172 * 3 2 1 32 32 H 1.09000 * 109.47837 * 149.99533 * 3 2 1 33 33 H 1.09005 * 109.47169 * 60.00190 * 5 4 3 34 34 H 1.08997 * 109.47433 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47399 * 300.00364 * 5 4 3 36 36 H 1.09002 * 109.47301 * 60.00001 * 6 4 3 37 37 H 1.08998 * 109.47448 * 180.02562 * 6 4 3 38 38 H 1.09005 * 109.47043 * 300.00264 * 6 4 3 39 39 H 1.08997 * 109.47212 * 299.72435 * 11 9 2 40 40 H 1.09002 * 109.46706 * 59.72934 * 11 9 2 41 41 H 0.96998 * 120.00643 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.00194 * 359.97438 * 23 22 12 43 43 H 1.08006 * 119.99942 * 180.27249 * 24 23 22 44 44 H 1.07994 * 120.00106 * 179.84074 * 25 24 23 45 45 H 1.08004 * 119.99611 * 179.97438 * 26 25 24 46 46 H 1.08007 * 120.00058 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2795 0.6439 -2.1637 6 6 1.1159 1.8932 -2.1639 7 6 3.1882 2.9853 -1.4426 8 7 3.7567 3.9688 -1.4426 9 6 2.1389 -1.1672 0.0005 10 8 3.3517 -1.1672 0.0010 11 6 1.3854 -2.4723 -0.0052 12 6 2.3796 -3.6353 -0.0102 13 1 3.0637 -3.5247 -0.8515 14 6 3.1624 -3.6326 1.2775 15 1 4.2420 -3.6170 1.2532 16 6 2.5002 -3.6498 2.4868 17 7 1.1906 -3.7654 2.5178 18 14 3.4634 -3.5091 4.0811 19 1 4.9118 -3.3901 3.7756 20 1 3.0146 -2.3054 4.8260 21 1 3.2296 -4.7194 4.9092 22 6 1.6301 -4.9363 -0.1398 23 6 2.2343 -6.0251 -0.7401 24 6 1.5485 -7.2197 -0.8550 25 6 0.2552 -7.3229 -0.3779 26 6 -0.3508 -6.2325 0.2178 27 6 0.3367 -5.0393 0.3367 28 1 -0.3633 0.0001 1.0276 29 1 -0.3632 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5139 33 1 2.7345 -0.3001 -2.1636 34 1 3.4616 0.9586 -3.1912 35 1 4.2319 0.5136 -1.6498 36 1 0.5267 2.6529 -1.6501 37 1 1.2975 2.2074 -3.1917 38 1 0.5708 0.9492 -2.1638 39 1 0.7587 -2.5339 0.8845 40 1 0.7588 -2.5261 -0.8955 41 1 0.7247 -3.7779 3.3685 42 1 3.2433 -5.9433 -1.1165 43 1 2.0221 -8.0718 -1.3200 44 1 -0.2816 -8.2555 -0.4700 45 1 -1.3614 -6.3131 0.5902 46 1 -0.1370 -4.1872 0.8017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353244282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:49 Heat of formation + Delta-G solvation = 19.289158 kcal Electronic energy + Delta-G solvation = -26935.787512 eV Core-core repulsion = 23404.734373 eV Total energy + Delta-G solvation = -3531.053139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.86686 -38.33065 -37.42903 -35.51804 -34.21238 -33.61203 -31.09174 -29.85268 -28.78306 -27.88564 -27.18607 -26.07325 -24.99409 -22.96120 -22.04755 -21.33731 -19.78438 -18.33992 -17.20531 -16.63728 -16.13718 -15.64056 -15.45829 -15.13376 -14.85556 -14.41724 -13.95270 -13.86335 -13.56673 -13.45663 -13.10485 -12.88868 -12.80979 -12.64623 -12.45451 -12.25821 -12.19767 -11.76876 -11.68758 -11.60679 -11.48884 -11.39097 -11.37783 -11.10151 -10.94246 -10.85463 -10.77090 -10.43057 -10.18305 -9.95255 -9.31416 -9.19771 -8.80365 -8.44981 -8.20823 -7.82216 -7.45743 -6.00010 -4.09310 2.47971 2.56716 2.67590 2.74667 3.27853 3.36581 3.40468 3.43782 3.57178 4.01537 4.42028 4.72131 4.74400 4.93465 4.95659 5.22883 5.29904 5.37620 5.51436 5.58111 5.67151 5.80071 5.81223 5.83352 5.87965 5.91777 5.93956 5.97982 6.01058 6.11131 6.32410 6.41840 6.42532 6.56428 6.68343 6.75858 6.90011 7.11333 7.13852 7.24608 7.44858 7.51352 7.52638 7.66502 7.91538 7.96297 8.10677 8.16065 8.32694 8.87773 9.09165 9.54263 10.93995 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.004458 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.451154 B = 6279.005509 C = 7207.497431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.628 5.628 3 C 0.131 3.869 4 C 0.016 3.984 5 C -0.132 4.132 6 C -0.142 4.142 7 C 0.225 3.775 8 N -0.443 5.443 9 C 0.526 3.474 10 O -0.516 6.516 11 C -0.137 4.137 12 C 0.087 3.913 13 H 0.037 0.963 14 C -0.468 4.468 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.027 4.027 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.069 4.069 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.053 0.947 41 H 0.259 0.741 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.998 4.781 -7.430 11.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.365 5.365 3 C 0.005 3.995 4 C 0.011 3.989 5 C -0.190 4.190 6 C -0.200 4.200 7 C -0.094 4.094 8 N -0.118 5.118 9 C 0.316 3.684 10 O -0.390 6.390 11 C -0.176 4.176 12 C 0.068 3.932 13 H 0.056 0.944 14 C -0.506 4.506 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.213 1.213 22 C -0.028 4.028 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.172 4.172 26 C -0.162 4.162 27 C -0.087 4.087 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.582 6.242 -7.266 11.087 hybrid contribution 0.169 -0.403 1.241 1.316 sum -5.413 5.839 -6.025 9.985 Atomic orbital electron populations 1.21852 0.80038 1.02716 1.01916 1.47954 1.06510 1.05216 1.76800 1.21213 0.99286 0.86610 0.92358 1.18829 0.94599 0.85738 0.99779 1.21872 1.00787 0.97400 0.98987 1.21997 0.94513 1.03398 1.00081 1.29113 0.93248 0.94143 0.92897 1.81176 1.09726 1.12217 1.08674 1.21197 0.88380 0.84916 0.73860 1.90627 1.14164 1.86798 1.47386 1.21976 1.00604 0.91508 1.03554 1.17651 0.91946 0.86581 0.96997 0.94440 1.21014 0.93108 1.47102 0.89339 0.92247 1.24862 0.94973 0.95185 0.98851 1.69670 1.06718 1.51206 1.25313 0.86562 0.80664 0.77349 0.83702 1.19836 1.21228 1.21280 1.20339 0.93078 0.97118 0.92236 1.20900 0.99133 0.93361 1.01635 1.20802 0.95297 0.97214 1.02663 1.20767 0.95816 0.97971 1.02693 1.21048 0.99334 0.94445 1.01328 1.21347 0.94426 0.97823 0.95098 0.92882 0.91578 0.90560 0.90534 0.89136 0.90247 0.92768 0.90845 0.91954 0.91977 0.89797 0.84943 0.92890 0.93019 0.87682 0.88134 0.88337 0.88113 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 9.15 59.85 0.55 1.38 16 2 N -0.63 -8.78 2.40 -181.57 -0.44 -9.21 16 3 C 0.13 1.65 4.56 -4.04 -0.02 1.63 16 4 C 0.02 0.18 0.77 -157.30 -0.12 0.06 16 5 C -0.13 -1.66 7.10 37.16 0.26 -1.40 16 6 C -0.14 -1.20 7.18 37.15 0.27 -0.94 16 7 C 0.22 2.91 13.86 -20.76 -0.29 2.62 16 8 N -0.44 -6.72 18.54 42.15 0.78 -5.94 16 9 C 0.53 9.68 5.83 -10.98 -0.06 9.61 16 10 O -0.52 -11.16 12.76 5.56 0.07 -11.09 16 11 C -0.14 -2.62 2.63 -27.88 -0.07 -2.69 16 12 C 0.09 1.95 1.97 -92.92 -0.18 1.77 16 13 H 0.04 0.85 7.91 -51.93 -0.41 0.44 16 14 C -0.47 -11.94 7.27 -34.44 -0.25 -12.19 16 15 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 16 C 0.06 1.54 5.12 -17.82 -0.09 1.45 16 17 N -0.89 -21.65 7.99 55.43 0.44 -21.21 16 18 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.03 -0.59 4.69 -104.63 -0.49 -1.08 16 23 C -0.13 -2.70 9.71 -39.58 -0.38 -3.09 16 24 C -0.14 -2.62 10.05 -39.58 -0.40 -3.02 16 25 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 26 C -0.14 -2.71 10.05 -39.59 -0.40 -3.11 16 27 C -0.07 -1.42 7.45 -39.59 -0.30 -1.71 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.50 6.05 -51.93 -0.31 0.19 16 30 H 0.08 0.79 6.43 -51.93 -0.33 0.46 16 31 H 0.08 0.80 8.07 -51.92 -0.42 0.38 16 32 H 0.09 1.36 7.42 -51.93 -0.39 0.98 16 33 H 0.08 1.09 6.15 -51.93 -0.32 0.77 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.07 7.73 -51.93 -0.40 0.67 16 36 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.68 5.99 -51.93 -0.31 0.37 16 39 H 0.13 2.75 4.67 -51.93 -0.24 2.51 16 40 H 0.05 0.88 7.40 -51.93 -0.38 0.50 16 41 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16 42 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 44 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 45 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 46 H 0.14 2.92 5.18 -52.48 -0.27 2.65 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -28.55 363.82 -7.77 -36.32 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.72 Total: 3.62 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -2.37 Total: -13.91 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.79 Total: -36.36 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.55 -7.77 -36.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353244282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.610 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds