Wall clock time and date at job start Tue Mar 31 2020 11:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00484 * 2 1 4 4 C 1.53006 * 109.46963 * 270.00081 * 3 2 1 5 5 C 1.52999 * 109.46631 * 299.99331 * 4 3 2 6 6 C 1.52993 * 109.47500 * 59.99358 * 4 3 2 7 7 C 1.47197 * 109.47070 * 179.97438 * 4 3 2 8 8 N 4.80457 * 118.48778 * 340.02432 * 2 1 3 9 9 C 1.34777 * 120.00020 * 179.97438 * 2 1 3 10 10 O 1.21276 * 120.00117 * 180.02562 * 9 2 1 11 11 C 1.50703 * 119.99807 * 0.27569 * 9 2 1 12 12 C 1.53003 * 109.47252 * 179.72544 * 11 9 2 13 13 H 1.09000 * 109.46766 * 305.00272 * 12 11 9 14 14 C 1.50696 * 109.47252 * 65.00018 * 12 11 9 15 15 H 1.08000 * 120.00385 * 234.68635 * 14 12 11 16 16 C 1.37881 * 119.99687 * 54.67602 * 14 12 11 17 17 N 1.31512 * 120.00310 * 4.87974 * 16 14 12 18 18 Si 1.86805 * 120.00034 * 184.87267 * 16 14 12 19 19 H 1.48500 * 109.46886 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46877 * 120.00349 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00504 * 18 16 14 22 22 C 1.50699 * 109.47038 * 185.00387 * 12 11 9 23 23 C 1.38237 * 119.99708 * 151.49066 * 22 12 11 24 24 C 1.38231 * 119.99613 * 179.78835 * 23 22 12 25 25 C 1.38237 * 120.00335 * 0.43657 * 24 23 22 26 26 C 1.38237 * 119.99507 * 359.80955 * 25 24 23 27 27 C 1.38226 * 120.00167 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47267 * 270.00321 * 1 2 3 29 29 H 1.08999 * 109.46536 * 30.00819 * 1 2 3 30 30 H 1.09000 * 109.46983 * 149.99956 * 1 2 3 31 31 H 1.09007 * 109.47016 * 29.99172 * 3 2 1 32 32 H 1.09000 * 109.47837 * 149.99533 * 3 2 1 33 33 H 1.09005 * 109.47169 * 60.00190 * 5 4 3 34 34 H 1.08997 * 109.47433 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47399 * 300.00364 * 5 4 3 36 36 H 1.09002 * 109.47301 * 60.00001 * 6 4 3 37 37 H 1.08998 * 109.47448 * 180.02562 * 6 4 3 38 38 H 1.09005 * 109.47043 * 300.00264 * 6 4 3 39 39 H 1.08997 * 109.47212 * 299.72435 * 11 9 2 40 40 H 1.09002 * 109.46706 * 59.72934 * 11 9 2 41 41 H 0.96998 * 120.00643 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.00194 * 359.97438 * 23 22 12 43 43 H 1.08006 * 119.99942 * 180.27249 * 24 23 22 44 44 H 1.07994 * 120.00106 * 179.84074 * 25 24 23 45 45 H 1.08004 * 119.99611 * 179.97438 * 26 25 24 46 46 H 1.08007 * 120.00058 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2795 0.6439 -2.1637 6 6 1.1159 1.8932 -2.1639 7 6 3.1882 2.9853 -1.4426 8 7 3.7567 3.9688 -1.4426 9 6 2.1389 -1.1672 0.0005 10 8 3.3517 -1.1672 0.0010 11 6 1.3854 -2.4723 -0.0052 12 6 2.3796 -3.6353 -0.0102 13 1 3.0637 -3.5247 -0.8515 14 6 3.1624 -3.6326 1.2775 15 1 4.2420 -3.6170 1.2532 16 6 2.5002 -3.6498 2.4868 17 7 1.1906 -3.7654 2.5178 18 14 3.4634 -3.5091 4.0811 19 1 4.9118 -3.3901 3.7756 20 1 3.0146 -2.3054 4.8260 21 1 3.2296 -4.7194 4.9092 22 6 1.6301 -4.9363 -0.1398 23 6 2.2343 -6.0251 -0.7401 24 6 1.5485 -7.2197 -0.8550 25 6 0.2552 -7.3229 -0.3779 26 6 -0.3508 -6.2325 0.2178 27 6 0.3367 -5.0393 0.3367 28 1 -0.3633 0.0001 1.0276 29 1 -0.3632 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5139 33 1 2.7345 -0.3001 -2.1636 34 1 3.4616 0.9586 -3.1912 35 1 4.2319 0.5136 -1.6498 36 1 0.5267 2.6529 -1.6501 37 1 1.2975 2.2074 -3.1917 38 1 0.5708 0.9492 -2.1638 39 1 0.7587 -2.5339 0.8845 40 1 0.7588 -2.5261 -0.8955 41 1 0.7247 -3.7779 3.3685 42 1 3.2433 -5.9433 -1.1165 43 1 2.0221 -8.0718 -1.3200 44 1 -0.2816 -8.2555 -0.4700 45 1 -1.3614 -6.3131 0.5902 46 1 -0.1370 -4.1872 0.8017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353244282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:48 Heat of formation + Delta-G solvation = 6.243956 kcal Electronic energy + Delta-G solvation = -26936.353194 eV Core-core repulsion = 23404.734373 eV Total energy + Delta-G solvation = -3531.618821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.13423 -39.79794 -38.66415 -36.74621 -35.88931 -34.72480 -32.87607 -31.36062 -30.18365 -28.84311 -28.40136 -27.50292 -26.21131 -24.41692 -23.34588 -22.79127 -21.33394 -19.71272 -18.21843 -18.19522 -17.75856 -17.02640 -16.84544 -16.53317 -16.28300 -15.52460 -15.42870 -15.32329 -14.94330 -14.64565 -14.39685 -14.15568 -13.95683 -13.75351 -13.72473 -13.65260 -13.27382 -13.23654 -13.08847 -13.02751 -12.78716 -12.71715 -12.65348 -12.49278 -12.28776 -12.18138 -12.02737 -11.85326 -11.77806 -11.61922 -10.99524 -10.95153 -10.49000 -10.13647 -9.39645 -9.34276 -9.05921 -7.89821 -6.03972 0.94555 1.05776 1.35612 1.40992 1.50424 1.60003 1.69535 2.15271 2.28908 2.48330 2.96710 3.24815 3.43415 3.76894 3.79612 4.02587 4.20719 4.39734 4.46378 4.52855 4.57438 4.61501 4.68916 4.77604 4.77997 4.85258 4.88338 4.91670 4.95276 5.00163 5.06348 5.11842 5.17902 5.21212 5.31687 5.39350 5.45824 5.60157 5.71551 5.73777 5.84142 5.98130 6.01463 6.15638 6.43119 6.46883 6.48776 6.64224 6.71801 6.90809 7.58004 7.70346 8.99023 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.004458 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.451154 B = 6279.005509 C = 7207.497431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.618 5.618 3 C 0.129 3.871 4 C 0.025 3.975 5 C -0.128 4.128 6 C -0.139 4.139 7 C 0.245 3.755 8 N -0.481 5.481 9 C 0.522 3.478 10 O -0.560 6.560 11 C -0.125 4.125 12 C 0.088 3.912 13 H 0.016 0.984 14 C -0.485 4.485 15 H 0.024 0.976 16 C 0.039 3.961 17 N -0.882 5.882 18 Si 0.921 3.079 19 H -0.291 1.291 20 H -0.281 1.281 21 H -0.283 1.283 22 C -0.049 4.049 23 C -0.153 4.153 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.147 4.147 27 C -0.079 4.079 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.261 0.739 42 H 0.101 0.899 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 4.615 -8.073 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.353 5.353 3 C 0.004 3.996 4 C 0.020 3.980 5 C -0.186 4.186 6 C -0.197 4.197 7 C -0.073 4.073 8 N -0.156 5.156 9 C 0.312 3.688 10 O -0.437 6.437 11 C -0.165 4.165 12 C 0.069 3.931 13 H 0.035 0.965 14 C -0.523 4.523 15 H 0.043 0.957 16 C -0.160 4.160 17 N -0.521 5.521 18 Si 0.750 3.250 19 H -0.216 1.216 20 H -0.207 1.207 21 H -0.210 1.210 22 C -0.050 4.050 23 C -0.171 4.171 24 C -0.160 4.160 25 C -0.169 4.169 26 C -0.165 4.165 27 C -0.097 4.097 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.144 0.856 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.624 6.097 -7.909 13.195 hybrid contribution 1.102 -0.409 1.408 1.834 sum -7.522 5.688 -6.502 11.455 Atomic orbital electron populations 1.22141 0.77417 1.04945 1.02621 1.47838 1.08030 1.04327 1.75085 1.21299 0.98367 0.86568 0.93390 1.18815 0.95876 0.84250 0.99025 1.21789 0.99454 0.97506 0.99896 1.22038 0.92531 1.04583 1.00528 1.29315 0.92342 0.93881 0.91724 1.81200 1.10849 1.13649 1.09911 1.21107 0.87838 0.86037 0.73799 1.90617 1.15927 1.87555 1.49617 1.21759 0.99720 0.90956 1.04040 1.17545 0.92271 0.88707 0.94561 0.96537 1.20961 0.91739 1.48227 0.91389 0.95726 1.25116 0.95759 0.95487 0.99662 1.69739 1.06272 1.50745 1.25372 0.86091 0.79109 0.77411 0.82423 1.21631 1.20746 1.20957 1.20331 0.93902 0.96895 0.93863 1.21081 0.99435 0.94251 1.02350 1.21139 0.95633 0.97154 1.02058 1.21182 0.95578 0.99017 1.01074 1.21370 1.00421 0.93887 1.00845 1.21328 0.94159 0.98665 0.95553 0.92923 0.87657 0.90126 0.87459 0.92299 0.91365 0.90934 0.93825 0.89868 0.90883 0.88980 0.86036 0.90421 0.92930 0.88051 0.85346 0.84903 0.85604 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 9.15 127.77 1.17 2.47 16 2 N -0.62 -16.63 2.40 -846.75 -2.03 -18.66 16 3 C 0.13 3.13 4.56 86.38 0.39 3.52 16 4 C 0.03 0.53 0.77 -53.99 -0.04 0.49 16 5 C -0.13 -3.24 7.10 71.98 0.51 -2.73 16 6 C -0.14 -1.88 7.18 71.98 0.52 -1.36 16 7 C 0.25 6.11 13.86 89.44 1.24 7.35 16 8 N -0.48 -14.30 18.54 20.00 0.37 -13.93 16 9 C 0.52 19.56 5.83 87.66 0.51 20.07 16 10 O -0.56 -25.58 12.76 -3.02 -0.04 -25.62 16 11 C -0.12 -4.83 2.63 29.85 0.08 -4.76 16 12 C 0.09 4.10 1.97 -12.29 -0.02 4.07 16 13 H 0.02 0.79 7.91 -2.39 -0.02 0.78 16 14 C -0.49 -25.89 7.27 25.60 0.19 -25.71 16 15 H 0.02 1.43 7.82 -2.91 -0.02 1.41 16 16 C 0.04 2.02 5.12 84.66 0.43 2.45 16 17 N -0.88 -42.81 7.99 21.45 0.17 -42.64 16 18 Si 0.92 43.60 29.54 68.60 2.03 45.63 16 19 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 C -0.05 -2.15 4.69 -19.87 -0.09 -2.24 16 23 C -0.15 -6.26 9.71 22.27 0.22 -6.04 16 24 C -0.14 -4.96 10.05 22.27 0.22 -4.74 16 25 C -0.15 -4.95 10.05 22.27 0.22 -4.73 16 26 C -0.15 -5.19 10.05 22.27 0.22 -4.96 16 27 C -0.08 -3.18 7.45 22.27 0.17 -3.01 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 1.13 6.05 -2.39 -0.01 1.12 16 30 H 0.08 1.45 6.43 -2.39 -0.02 1.43 16 31 H 0.11 1.96 8.07 -2.38 -0.02 1.94 16 32 H 0.06 1.83 7.42 -2.39 -0.02 1.81 16 33 H 0.07 1.90 6.15 -2.38 -0.01 1.88 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.35 7.73 -2.39 -0.02 1.33 16 36 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 1.14 5.99 -2.38 -0.01 1.13 16 39 H 0.12 5.03 4.67 -2.39 -0.01 5.02 16 40 H 0.08 2.55 7.40 -2.39 -0.02 2.53 16 41 H 0.26 12.30 8.31 -92.71 -0.77 11.53 16 42 H 0.10 4.08 8.06 -2.91 -0.02 4.05 16 43 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 44 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 45 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 46 H 0.13 5.47 5.18 -2.91 -0.02 5.46 16 Total: -1.00 -64.65 363.82 7.41 -57.24 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.98 Total: 17.84 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 5.93 Total: -19.86 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -1.49 Total: -75.23 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.04 Total: -25.62 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -64.65 7.41 -57.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353244282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.484 kcal (2) G-P(sol) polarization free energy of solvation -64.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds